Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011898

Physical Location & Seq

Genomic Coordinates Reverse (-)

68747859 .. 68750843

Gene Structure 2985 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG534100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTTCTTGCAAAGACCCGAAACCGAATTGTGGGTTCGTTGAAGGGCCTATAATCGTAGGTGCAGGACCATCTGGTCTCGCAGTAGCTGCTTGCTTATCCAACCATGGCGTCCCTTATTTGATTCTTGAGAAAAGCAACTGCATAGCTTCTCTATGGCAACAAAAGACTTACGAACGACTCAAACTTCATCTTCCCAAACAGTTTTGCCAGCTTCCACTCGTGGGGTTCCCTGAAGATTTCCCAAAATACCCCACAAAGTACCAGTTCATTTCCTACATGGAGTCCTATGCTTCCCACTTCTCAATCAAGCCGAGGTTCAACCAGGCCGTCCAAAATGCTGCGTTTGATTCGGCGTCGAGGCTCTGGAGGGTTCAGACCCAAGATTTCGAGTACATTTCCCGGTGGCTTATTGTGGCCACGGGAGAAAATGCCGAGCCGGTGATTCCCGATATTCATGGGATTGACAAGTTTAAAGGTCGGATTCTTCATACCAGTTTGTACAAATCTGGGGCTGATTTCAGAAATCAAAGGGTTTTGGTTATTGGGTGTGGGAATTCTGGTATGGAAGTCAGCTTAGACCTTTGCAGATCATACAATGCAATCCCTCATATGGTTGTTAGGAACACTGTGCATGTTTTACCAAGGGAGATGTTTGGCTTCTCAACCTTTCAGATAGCAATGACACTTCTCAAATGGATTCCGGTAAAACTCGTGGACAGGATCCTATTACTGGTGGCTAGTTTGACTCTCGGCAACACGGATCAGTTGGGCCTCCGGCGGCCCAAGACCGGCCCAATCGAGCTCAAAGCGGCCACCGGAAAGACCCCGGTTCTCGATGTCGGAGCATTGTCACAAATAAAATCCGGCAAAATAAAGGTGGTTGAAAATGTGAAGGAGATAACAATAAATGGAGCCAAATTTAAGAATGGACAAGAAAAGGAGTTTGATTCTATAATCTTTGCAACTGGGTACAAGAGCAATGTGCCTACTTGGCTCAAGGTGAGCATTACCAGCTGCACTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009850 GO:0009851 GO:0009909 GO:0009911 GO:0009987 GO:0010154 GO:0010229 GO:0010817 GO:0012505 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0022414 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0047434 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0090567 GO:0098588 GO:0098791 GO:0098827 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like Pyr_redox_3

Protein Analysis

342

Amino Acids

38.03

Weight (kDa)

9.34

Isoelectric Point (pI)

27.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_3	PF13738	18 - 209	7.6e-27	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_2	PF07992	18 - 198	8e-10	Pyridine nucleotide-disulphide oxidoreductase
FMO-like	PF00743	19 - 331	1.2e-28	Flavin-binding monooxygenase-like
Lys_Orn_oxgnase	PF13434	83 - 209	7.6e-13	L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11320 AT5G11320
fragaria_vesca	FvH4_2g29930 FvH4_2g29930
malus_domestica	MD08G1139500.v1.1 MD15G1117200.v1.1
prunus_persica	Prupe.1G468500_v2.0.a1
pyrus_communis	pycom08g11760 pycom15g10560
rosa_chinensis	RchiOBHm_Chr6g0312961
rosa_laevigata	RLG00000010282
rosa_multiflora	Rmu_sc0008049.1_g000062
rosa_roxburghii	Rroxscaffold_7G00156290
rosa_rugosa	Rorug06G0401000
rosa_samantha	Rh6AG517900 Rh6BG529600 Rh6CG534100 Rh6DG520700
rosa_wichuraiana	Rw6G045040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	75
AciI	CCGC	2 cut(s)	781, 812
AclWI	GGATC	3 cut(s)	718, 731, 771
AcoI	YGGCCR	2 cut(s)	417, 813
AcsI	RAATTY	2 cut(s)	556, 920
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	2 cut(s)	111, 356
AfaI	GTAC	4 cut(s)	263, 395, 503, 974
AfiI	CCNNNNNNNGG	5 cut(s)	32, 224, 613, 733, 791
AgsI	TTSAA	3 cut(s)	44, 322, 887
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	6 cut(s)	89, 149, 214, 576, 805, 1017
AluI	AGCT	6 cut(s)	89, 149, 214, 576, 805, 1017
Alw21I	GWGCWC	1 cut(s)	807
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	3 cut(s)	718, 731, 771
AlwNI	CAGNNNCTG	1 cut(s)	89
AoxI	GGCC	7 cut(s)	47, 327, 417, 772, 782, 793, 813
ApeKI	GCWGC	3 cut(s)	89, 341, 1017
ApoI	RAATTY	2 cut(s)	556, 920
AspS9I	GGNCC	5 cut(s)	47, 68, 772, 783, 794
AsuC2I	CCSGG	2 cut(s)	403, 830
AsuHPI	GGTGA	2 cut(s)	454, 1015
AvaII	GGWCC	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	723
BanII	GRGCYC	1 cut(s)	807
BauI	CACGAG	2 cut(s)	221, 713
Bbv12I	GWGCWC	1 cut(s)	807
BbvI	GCAGC	3 cut(s)	76, 328, 1004
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	326
BcnI	CCSGG	2 cut(s)	403, 830
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	741
BglI	GCCNNNNNGGC	1 cut(s)	994
BisI	GCNGC	5 cut(s)	90, 342, 782, 813, 1018
BlsI	GCNGC	5 cut(s)	91, 343, 783, 814, 1019
Bme1390I	CCNGG	3 cut(s)	326, 403, 830
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	5 cut(s)	47, 68, 772, 783, 794
BmiI	GGNNCC	3 cut(s)	230, 725, 916
BmrFI	CCNGG	3 cut(s)	326, 403, 830
BmrI	ACTGGG	1 cut(s)	978
BmuI	ACTGGG	1 cut(s)	978
BpmI	CTGGAG	1 cut(s)	388
BpuEI	CTTGAG	2 cut(s)	149, 983
BpuMI	CCSGG	2 cut(s)	403, 830
BsaHI	GRCGYC	2 cut(s)	111, 356
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	5 cut(s)	106, 314, 420, 644, 828
BsaWI	WCCGGW	2 cut(s)	703, 818
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 224, 613, 733, 791
Bse118I	RCCGGY	2 cut(s)	439, 791
Bse1I	ACTGG	4 cut(s)	265, 495, 738, 973
Bse3DI	GCAATG	2 cut(s)	687, 988
BseBI	CCWGG	1 cut(s)	326
BseDI	CCNNGG	5 cut(s)	106, 314, 420, 644, 828
BseLI	CCNNNNNNNGG	5 cut(s)	32, 224, 613, 733, 791
BseMI	GCAATG	2 cut(s)	687, 988
BseNI	ACTGG	4 cut(s)	265, 495, 738, 973
BseXI	GCAGC	3 cut(s)	76, 328, 1004
BsgI	GTGCAG	2 cut(s)	84, 1003
BshFI	GGCC	7 cut(s)	49, 329, 419, 774, 784, 795, 815
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	8 cut(s)	403, 440, 704, 778, 792, 819, 830, 867
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	5 cut(s)	32, 224, 613, 733, 791
BsmAI	GTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	7 cut(s)	49, 329, 419, 774, 784, 795, 815
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	3 cut(s)	590, 723, 763
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	2 cut(s)	781, 812
BspANI	GGCC	7 cut(s)	49, 329, 419, 774, 784, 795, 815
BspLI	GGNNCC	3 cut(s)	230, 725, 916
BspPI	GGATC	3 cut(s)	718, 731, 771
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	687, 988
BsrFI	RCCGGY	2 cut(s)	439, 791
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	4 cut(s)	265, 495, 738, 973
BssAI	RCCGGY	2 cut(s)	439, 791
BssECI	CCNNGG	5 cut(s)	106, 314, 420, 644, 828
BssMI	GATC	3 cut(s)	590, 723, 763
BssNI	GRCGYC	2 cut(s)	111, 356
BssSI	CACGAG	2 cut(s)	221, 713
BssT1I	CCWWGG	2 cut(s)	106, 644
Bst2BI	CACGAG	2 cut(s)	221, 713
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	204, 631
BstACI	GRCGYC	2 cut(s)	111, 356
BstAPI	GCANNNNNTGC	1 cut(s)	89
BstAUI	TGTACA	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	94, 212
BstDEI	CTNAG	1 cut(s)	577
BstDSI	CCRYGG	2 cut(s)	106, 420
BstKTI	GATC	3 cut(s)	593, 726, 766
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	3 cut(s)	590, 723, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	89, 994, 1014
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	324, 401, 828
BstV1I	GCAGC	3 cut(s)	76, 328, 1004
BstX2I	RGATCY	1 cut(s)	723
BstYI	RGATCY	1 cut(s)	723
BsuRI	GGCC	7 cut(s)	49, 329, 419, 774, 784, 795, 815
BtgI	CCRYGG	2 cut(s)	106, 420
BtsIMutI	CAGTG	1 cut(s)	627
Cac8I	GCNNGC	2 cut(s)	94, 212
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr10I	RCCGGY	2 cut(s)	439, 791
Cfr13I	GGNCC	5 cut(s)	47, 68, 772, 783, 794
CseI	GACGC	2 cut(s)	100, 345
Csp6I	GTAC	4 cut(s)	262, 394, 502, 973
CviAII	CATG	4 cut(s)	107, 280, 458, 635
CviQI	GTAC	4 cut(s)	262, 394, 502, 973
DdeI	CTNAG	1 cut(s)	577
DpnI	GATC	3 cut(s)	592, 725, 765
DpnII	GATC	3 cut(s)	590, 723, 763
DraI	TTTAAA	1 cut(s)	475
DrdI	GACNNNNNNGTC	1 cut(s)	75
DseDI	GACNNNNNNGTC	1 cut(s)	75
EaeI	YGGCCR	2 cut(s)	417, 813
Ecl136II	GAGCTC	1 cut(s)	805
Eco130I	CCWWGG	2 cut(s)	106, 644
Eco24I	GRGCYC	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	68
Eco53kI	GAGCTC	1 cut(s)	805
Eco57I	CTGAAG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	324
EcoT14I	CCWWGG	2 cut(s)	106, 644
EcoT38I	GRGCYC	1 cut(s)	807
ErhI	CCWWGG	2 cut(s)	106, 644
FaeI	CATG	4 cut(s)	110, 283, 461, 638
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	4 cut(s)	106, 279, 457, 634
FauNDI	CATATG	1 cut(s)	612
Fnu4HI	GCNGC	5 cut(s)	90, 342, 782, 813, 1018
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	5 cut(s)	90, 342, 782, 813, 1018
FspBI	CTAG	1 cut(s)	741
GluI	GCNGC	5 cut(s)	90, 342, 782, 813, 1018
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	7 cut(s)	49, 329, 419, 774, 784, 795, 815
HapII	CCGG	8 cut(s)	403, 440, 704, 778, 792, 819, 830, 867
HgaI	GACGC	2 cut(s)	100, 345
Hin1I	GRCGYC	2 cut(s)	111, 356
Hin1II	CATG	4 cut(s)	110, 283, 461, 638
HinfI	GANTC	9 cut(s)	124, 180, 284, 350, 445, 484, 700, 748, 950
HpaII	CCGG	8 cut(s)	403, 440, 704, 778, 792, 819, 830, 867
HphI	GGTGA	2 cut(s)	454, 1015
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	5 cut(s)	378, 483, 524, 675, 845
Hpy188III	TCNNGA	4 cut(s)	128, 367, 449, 836
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	2 cut(s)	38, 889
HpyCH4III	ACNGT	2 cut(s)	204, 631
HpyCH4V	TGCA	8 cut(s)	12, 65, 144, 588, 602, 634, 965, 1020
HpyF10VI	GCNNNNNNNGC	3 cut(s)	89, 994, 1014
HpyF3I	CTNAG	1 cut(s)	577
Hsp92I	GRCGYC	2 cut(s)	111, 356
Hsp92II	CATG	4 cut(s)	110, 283, 461, 638
Kzo9I	GATC	3 cut(s)	590, 723, 763
LmnI	GCTCC	2 cut(s)	845, 914
Lsp1109I	GCAGC	3 cut(s)	76, 328, 1004
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	852
MalI	GATC	3 cut(s)	592, 725, 765
MboI	GATC	3 cut(s)	590, 723, 763
MboII	GAAGA	3 cut(s)	185, 248, 479
MflI	RGATCY	1 cut(s)	723
MhlI	GDGCHC	1 cut(s)	807
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	3 cut(s)	28, 556, 920
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	3 cut(s)	174, 293, 742
MmeI	TCCRAC	3 cut(s)	126, 461, 823
MnlI	CCTC	5 cut(s)	309, 354, 363, 618, 785
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	2 cut(s)	474, 924
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	1017
MspI	CCGG	8 cut(s)	403, 440, 704, 778, 792, 819, 830, 867
MspR9I	CCNGG	3 cut(s)	326, 403, 830
MvaI	CCWGG	1 cut(s)	326
MwoI	GCNNNNNNNGC	3 cut(s)	89, 994, 1014
NciI	CCSGG	2 cut(s)	403, 830
NcoI	CCATGG	1 cut(s)	106
NdeI	CATATG	1 cut(s)	612
NdeII	GATC	3 cut(s)	590, 723, 763
NlaIII	CATG	4 cut(s)	110, 283, 461, 638
NlaIV	GGNNCC	3 cut(s)	230, 725, 916
NmeAIII	GCCGAG	3 cut(s)	339, 460, 732
NmuCI	GTSAC	1 cut(s)	852
NspI	RCATGY	1 cut(s)	638
PfeI	GAWTC	6 cut(s)	124, 350, 445, 484, 700, 950
PkrI	GCNGC	5 cut(s)	91, 343, 783, 814, 1019
PleI	GAGTC	3 cut(s)	174, 292, 742
PpsI	GAGTC	3 cut(s)	174, 292, 742
Psp124BI	GAGCTC	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	3 cut(s)	230, 725, 916
PspPI	GGNCC	5 cut(s)	47, 68, 772, 783, 794
PstNI	CAGNNNCTG	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	723
PvuII	CAGCTG	1 cut(s)	1017
RsaI	GTAC	4 cut(s)	263, 395, 503, 974
RsaNI	GTAC	4 cut(s)	262, 394, 502, 973
SacI	GAGCTC	1 cut(s)	807
SaqAI	TTAA	2 cut(s)	474, 924
SatI	GCNGC	5 cut(s)	90, 342, 782, 813, 1018
Sau3AI	GATC	3 cut(s)	590, 723, 763
Sau96I	GGNCC	5 cut(s)	47, 68, 772, 783, 794
SchI	GAGTC	3 cut(s)	174, 293, 742
ScrFI	CCNGG	3 cut(s)	326, 403, 830
SduI	GDGCHC	1 cut(s)	807
SinI	GGWCC	1 cut(s)	68
SmlI	CTYRAG	2 cut(s)	128, 998
SmoI	CTYRAG	2 cut(s)	128, 998
Sse9I	AATT	3 cut(s)	28, 556, 920
SsiI	CCGC	2 cut(s)	781, 812
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	3 cut(s)	324, 401, 828
StyI	CCWWGG	2 cut(s)	106, 644
TaaI	ACNGT	2 cut(s)	204, 631
TaqI	TCGA	4 cut(s)	359, 390, 801, 837
TasI	AATT	3 cut(s)	28, 556, 920
TatI	WGTACW	2 cut(s)	393, 501
TauI	GCSGC	2 cut(s)	784, 815
TfiI	GAWTC	6 cut(s)	124, 350, 445, 484, 700, 950
Tru1I	TTAA	2 cut(s)	474, 924
Tru9I	TTAA	2 cut(s)	474, 924
TscAI	CASTG	1 cut(s)	634
TseFI	GTSAC	1 cut(s)	852
TseI	GCWGC	3 cut(s)	89, 341, 1017
Tsp45I	GTSAC	1 cut(s)	852
TspDTI	ATGAA	4 cut(s)	179, 259, 446, 479
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	2 cut(s)	556, 920
XceI	RCATGY	1 cut(s)	638
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.