Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011898

Physical Location & Seq

Genomic Coordinates Forward (+)

54571153 .. 54572155

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0401000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTGTGTCAGTCATGCAGATGCAGAGGCAGATACAAATGCCGAAGGAGAGACGTACAGACACAAAGTTGCTAACTGCGAAAGTCATCCCGACGACAGCAAGGAGGCAAGGAGGAATTCAATGATCTTTCTCCTTGTCCGGCGTCGGTTGACAACAGCGTTGGCGGTTTCTGCTTCGCTGTTGTTGTATCATTTGCCGGACGGGAATGGTTGTGTTAATACCATATTGGCTTATGGTTTGCTGGCCTTGAGGTTTGCATGTGGTGGCAACGTAGTTTGGTTTTCTATCTTCTCTGAGGCATGGAGGTCATGGGCATCATCTCGAAGGGATTCATGGCGTGAGTTGGGTTCAGATCATGTCCAGTCGGCGGCGGAAGGATGGCTTATTCTGGCTTCATTGATGCTTTCTGGTGGCGGTTCCTTCAAGCATCGTGGCTCAGACTTTATTAATGATTTCTGGTGGCAGTTCTTTCAGGCTTCGTGGCTCTGGCTTGCTCGTGGCGGGGTGGTGGCGACAATGGCTCGTTTTGGTGCGTACGGCGTGTCTGCACAGGGAGAGATGACTGGATTGGGTTGGGCCACGGGTTGGACCTTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005829 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009850 GO:0009851 GO:0009909 GO:0009911 GO:0009987 GO:0010154 GO:0010229 GO:0010817 GO:0012505 GO:0016020 GO:0016829 GO:0016830 GO:0016831 GO:0022414 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044249 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0047434 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0090567 GO:0098588 GO:0098791 GO:0098827 GO:0099402 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00380 ko01100 map00380 map01100

Pfam Domains

Protein Families

FMO-like Pyr_redox_3

Protein Analysis

199

Amino Acids

21.94

Weight (kDa)

6.58

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011898)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11320 AT5G11320
fragaria_vesca	FvH4_2g29930 FvH4_2g29930
malus_domestica	MD08G1139500.v1.1 MD15G1117200.v1.1
prunus_persica	Prupe.1G468500_v2.0.a1
pyrus_communis	pycom08g11760 pycom15g10560
rosa_chinensis	RchiOBHm_Chr6g0312961
rosa_laevigata	RLG00000010282
rosa_multiflora	Rmu_sc0008049.1_g000062
rosa_roxburghii	Rroxscaffold_7G00156290
rosa_rugosa	Rorug06G0401000
rosa_samantha	Rh6AG517900 Rh6BG529600 Rh6CG534100 Rh6DG520700
rosa_wichuraiana	Rw6G045040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	585
AciI	CCGC	5 cut(s)	164, 368, 371, 414, 501
AcsI	RAATTY	1 cut(s)	115
AcyI	GRCGYC	1 cut(s)	142
AfaI	GTAC	2 cut(s)	56, 536
AfiI	CCNNNNNNNGG	2 cut(s)	367, 585
AgsI	TTSAA	2 cut(s)	120, 424
Alw26I	GTCTC	1 cut(s)	44
AoxI	GGCC	2 cut(s)	243, 576
ApoI	RAATTY	1 cut(s)	115
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	576, 588
AvaII	GGWCC	1 cut(s)	588
BauI	CACGAG	1 cut(s)	495
BccI	CCATC	1 cut(s)	372
BceAI	ACGGC	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	598
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme18I	GGWCC	1 cut(s)	588
BmgT120I	GGNCC	2 cut(s)	576, 588
BmiI	GGNNCC	1 cut(s)	418
BmsI	GCATC	4 cut(s)	10, 323, 390, 436
BpuEI	CTTGAG	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	142
BsaJI	CCNNGG	2 cut(s)	579, 591
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 585
Bse1I	ACTGG	2 cut(s)	361, 568
BseDI	CCNNGG	2 cut(s)	579, 591
BseGI	GGATG	2 cut(s)	85, 383
BseLI	CCNNNNNNNGG	2 cut(s)	367, 585
BseMII	CTCAG	2 cut(s)	285, 450
BseNI	ACTGG	2 cut(s)	361, 568
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	2 cut(s)	245, 578
BsiSI	CCGG	2 cut(s)	139, 197
BsiWI	CGTACG	1 cut(s)	534
BslI	CCNNNNNNNGG	2 cut(s)	367, 585
BsmAI	GTCTC	1 cut(s)	44
BsmBI	CGTCTC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	245, 578
Bsp143I	GATC	2 cut(s)	123, 352
BspACI	CCGC	5 cut(s)	164, 368, 371, 414, 501
BspANI	GGCC	2 cut(s)	245, 578
BspCNI	CTCAG	2 cut(s)	286, 449
BspLI	GGNNCC	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	361, 568
BssECI	CCNNGG	2 cut(s)	579, 591
BssMI	GATC	2 cut(s)	123, 352
BssNI	GRCGYC	1 cut(s)	142
BssSI	CACGAG	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	591
Bst2BI	CACGAG	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	243, 492
BstDEI	CTNAG	2 cut(s)	294, 436
BstDSI	CCRYGG	1 cut(s)	579
BstF5I	GGATG	2 cut(s)	85, 383
BstKTI	GATC	2 cut(s)	126, 355
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	123, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	170, 518
BstNSI	RCATGY	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	245, 578
BtgI	CCRYGG	1 cut(s)	579
BtsCI	GGATG	2 cut(s)	85, 383
Cac8I	GCNNGC	2 cut(s)	243, 492
Cfr13I	GGNCC	2 cut(s)	576, 588
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	55, 535
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	6 cut(s)	14, 258, 300, 309, 333, 356
CviQI	GTAC	2 cut(s)	55, 535
DdeI	CTNAG	2 cut(s)	294, 436
DpnI	GATC	2 cut(s)	125, 354
DpnII	GATC	2 cut(s)	123, 352
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	591
ErhI	CCWWGG	1 cut(s)	591
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	6 cut(s)	17, 261, 303, 312, 336, 359
FaiI	YATR	8 cut(s)	15, 224, 234, 259, 301, 310, 334, 357
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	6 cut(s)	13, 257, 299, 308, 332, 355
FauI	CCCGC	1 cut(s)	494
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	2 cut(s)	72, 390
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	1 cut(s)	598
GluI	GCNGC	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	245, 578
HapII	CCGG	2 cut(s)	139, 197
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	6 cut(s)	17, 261, 303, 312, 336, 359
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	2 cut(s)	139, 197
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188I	TCNGA	3 cut(s)	295, 352, 439
Hpy188III	TCNNGA	2 cut(s)	89, 321
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	2 cut(s)	95, 147
HpyAV	CCTTC	4 cut(s)	38, 318, 368, 430
HpyCH4IV	ACGT	2 cut(s)	53, 270
HpyCH4V	TGCA	4 cut(s)	17, 23, 257, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	170, 518
HpyF3I	CTNAG	2 cut(s)	294, 436
HpySE526I	ACGT	2 cut(s)	53, 270
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	6 cut(s)	17, 261, 303, 312, 336, 359
Kzo9I	GATC	2 cut(s)	123, 352
LweI	GCATC	4 cut(s)	10, 323, 390, 436
MaeI	CTAG	1 cut(s)	598
MaeII	ACGT	2 cut(s)	53, 270
MalI	GATC	2 cut(s)	125, 354
MboI	GATC	2 cut(s)	123, 352
MboII	GAAGA	1 cut(s)	280
MluCI	AATT	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	6 cut(s)	19, 97, 105, 243, 289, 297
MroXI	GAANNNNTTC	1 cut(s)	328
MseI	TTAA	2 cut(s)	216, 447
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	2 cut(s)	139, 197
MwoI	GCNNNNNNNGC	2 cut(s)	170, 518
NdeII	GATC	2 cut(s)	123, 352
NlaIII	CATG	6 cut(s)	17, 261, 303, 312, 336, 359
NlaIV	GGNNCC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	329
Pfl23II	CGTACG	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	1 cut(s)	370
PshBI	ATTAAT	1 cut(s)	447
PspLI	CGTACG	1 cut(s)	534
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	576, 588
RsaI	GTAC	2 cut(s)	56, 536
RsaNI	GTAC	2 cut(s)	55, 535
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	216, 447
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	123, 352
Sau96I	GGNCC	2 cut(s)	576, 588
SetI	ASST	5 cut(s)	56, 254, 273, 308, 593
SfaNI	GCATC	4 cut(s)	10, 323, 390, 436
SinI	GGWCC	1 cut(s)	588
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	5 cut(s)	164, 368, 371, 414, 501
SspMI	CTAG	1 cut(s)	598
StyI	CCWWGG	1 cut(s)	591
TaiI	ACGT	2 cut(s)	56, 273
TaqI	TCGA	1 cut(s)	322
TasI	AATT	1 cut(s)	115
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	2 cut(s)	216, 447
Tru9I	TTAA	2 cut(s)	216, 447
TspDTI	ATGAA	2 cut(s)	321, 384
Van91I	CCANNNNNTGG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	588
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.