Prupe.1G480100_v2.0.a1

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017993
Physical Location & Seq
Reverse (-)
40115622 .. 40116602
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G480100.1

Sequence Viewer

Length: 933 bp
ATGTCCACAGTTGAAGAAGCACCAGACTTTCTTGAAGTTCTTTCTGATGGATCTGTAAAACGCTTTGTGCCGGGTGTGGTCCCTGCCTCACCAGAATCAATTAATGGATTCAAGTCCAAGGATGTGATCATTGACTCCTCAAAGCCAATTACCGGAAGGATTTTCCTTCCTGGTAATCCAACATCCTTGAGTAAGCTTCCAGTAGTGGTTTATTTTCATGGTGGTGGCTTCTGCATTGGCTCAACCACATGGCCTGGCTACCATAATTTCCTAGGAGGCTTCTCTGTTGCATCCCAATCCATTGTTATTTCGGTTGACTACCGTTTAGCTCCAGAGCACCGGCTCCCCATAGCTTATGAAGACTGTTACTGCACACTTGATTGGCTTGGTCACCAAGTAAGCTCTGAGCCATGGCTGGACCAAGCTGACCTCTCCCGGGTGTTTCTCTCCGGGGACAGTGCAGGGGGAAACATATCACACAATGTTGCTGTGAAAGTTATTCGGAATAAAATCAGTCATGTCAAAATAAGCGGCTTGTTGTTGATACATCCTTATTTTGGGAGTGAAAGGAGAACTGAGAAAGAGATGGCTGAAGAGGGAGCAGGGGATGTGGCAAGCATTGACATGTTTTGGAGACTAAGTATACCTGATGGCTCCAACCATGACTATTTCGGATGTAACTTTGAGAAGACACAACTGTCTGCAACTGAATGGATTGATGAGTTCCCCGCTGTGGCAGTTTATGTGGCAGGGTTGGATTTTTTGAAAGAGAGGGGAGTGATGTATGCTGAGTTTCTGCAGAAAAAAGGAGTTAAAGAAGTGAAGCTGGTGGAGGCTGAGAAGGAGTCTCATGTGTTTCATGTTTTTCACCCTGAATCTGAAGCAACCCGTTTGCTTGAGCGAAATATGACTGAATTCATCAGGAGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

311

Amino Acids

34.44

Weight (kDa)

5.46

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017993)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29190
malus_domestica MD15G1124600.v1.1
prunus_persica Prupe.1G480100_v2.0.a1
pyrus_communis pycom15g11220
rosa_chinensis RchiOBHm_Chr6g0298051
rosa_laevigata RLG00000011540
rosa_multiflora Rmu_sc0002800.1_g000016
rosa_rugosa Rorug06G0278200
rosa_samantha Rh6AG388700 Rh6CG402900
rosa_wichuraiana Rw6G033930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 697
AccI GTMKAC 1 cut(s) 643
AciI CCGC 2 cut(s) 531, 729
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 914
AcuI CTGAAG 2 cut(s) 612, 900
AfiI CCNNNNNNNGG 4 cut(s) 152, 436, 557, 733
AflIII ACRYGT 1 cut(s) 624
AgsI TTSAA 4 cut(s) 14, 35, 112, 766
AjnI CCWGG 2 cut(s) 169, 253
AluBI AGCT 6 cut(s) 196, 329, 353, 402, 425, 826
AluI AGCT 6 cut(s) 196, 329, 353, 402, 425, 826
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 628, 852
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 435
AoxI GGCC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 914
AseI ATTAAT 1 cut(s) 102
AspA2I CCTAGG 1 cut(s) 271
AspS9I GGNCC 2 cut(s) 79, 418
AsuC2I CCSGG 4 cut(s) 72, 436, 437, 451
AsuHPI GGTGA 3 cut(s) 81, 383, 860
AvaI CYCGRG 1 cut(s) 435
AvaII GGWCC 2 cut(s) 79, 418
AvrII CCTAGG 1 cut(s) 271
BbsI GAAGAC 2 cut(s) 366, 695
Bbv12I GWGCWC 1 cut(s) 339
BccI CCATC 3 cut(s) 41, 580, 644
BciT130I CCWGG 2 cut(s) 171, 255
BclI TGATCA 1 cut(s) 126
BcnI CCSGG 4 cut(s) 72, 436, 437, 451
BcoDI GTCTC 2 cut(s) 628, 852
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 797
BisI GCNGC 1 cut(s) 532
BlnI CCTAGG 1 cut(s) 271
BlsI GCNGC 1 cut(s) 533
Bme1390I CCNGG 6 cut(s) 72, 171, 255, 436, 437, 451
Bme18I GGWCC 2 cut(s) 79, 418
BmeT110I CYCGRG 1 cut(s) 435
BmgT120I GGNCC 2 cut(s) 79, 418
BmiI GGNNCC 4 cut(s) 81, 344, 655, 926
BmrFI CCNGG 6 cut(s) 72, 171, 255, 436, 437, 451
BmsI GCATC 1 cut(s) 299
BpiI GAAGAC 2 cut(s) 366, 695
BpmI CTGGAG 1 cut(s) 315
BpuEI CTTGAG 2 cut(s) 208, 917
BpuMI CCSGG 4 cut(s) 72, 436, 437, 451
BsaJI CCNNGG 5 cut(s) 117, 271, 410, 435, 450
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 436, 557, 733
Bse118I RCCGGY 1 cut(s) 339
Bse1I ACTGG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 171, 255
BseDI CCNNGG 5 cut(s) 117, 271, 410, 435, 450
BseGI GGATG 6 cut(s) 127, 182, 290, 547, 613, 680
BseLI CCNNNNNNNGG 4 cut(s) 152, 436, 557, 733
BseMII CTCAG 4 cut(s) 396, 567, 780, 828
BseNI ACTGG 1 cut(s) 200
BseRI GAGGAG 1 cut(s) 127
BsgI GTGCAG 2 cut(s) 355, 480
BshFI GGCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 435
BsiSI CCGG 5 cut(s) 71, 153, 340, 436, 450
BslFI GGGAC 2 cut(s) 65, 467
BslI CCNNNNNNNGG 4 cut(s) 152, 436, 557, 733
BsmAI GTCTC 2 cut(s) 628, 852
BsmFI GGGAC 2 cut(s) 65, 467
BsnI GGCC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 435
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 2 cut(s) 50, 126
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 2 cut(s) 531, 729
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 4 cut(s) 397, 568, 781, 829
BspLI GGNNCC 4 cut(s) 81, 344, 655, 926
BspMAI CTGCAG 1 cut(s) 801
BspPI GGATC 1 cut(s) 58
BsrFI RCCGGY 1 cut(s) 339
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 339
BssECI CCNNGG 5 cut(s) 117, 271, 410, 435, 450
BssMI GATC 2 cut(s) 50, 126
BssNAI GTATAC 1 cut(s) 644
BssT1I CCWWGG 3 cut(s) 117, 271, 410
Bst1107I GTATAC 1 cut(s) 644
Bst2UI CCWGG 2 cut(s) 171, 255
Bst4CI ACNGT 5 cut(s) 10, 323, 365, 458, 699
Bst6I CTCTTC 1 cut(s) 588
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 5 cut(s) 405, 576, 638, 789, 837
BstDSI CCRYGG 1 cut(s) 410
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 6 cut(s) 127, 182, 290, 547, 613, 680
BstKTI GATC 2 cut(s) 53, 129
BstMAI GTCTC 2 cut(s) 628, 852
BstMBI GATC 2 cut(s) 50, 126
BstNI CCWGG 2 cut(s) 171, 255
BstNSI RCATGY 1 cut(s) 628
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 6 cut(s) 70, 169, 253, 434, 435, 449
BstSFI CTRYAG 1 cut(s) 797
BstV2I GAAGAC 2 cut(s) 366, 695
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 644
BsuRI GGCC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 410
BtsCI GGATG 6 cut(s) 127, 182, 290, 547, 613, 680
BtsIMutI CAGTG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 616
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 79, 418
Cfr9I CCCGGG 1 cut(s) 435
CviAII CATG 8 cut(s) 218, 249, 411, 518, 625, 662, 851, 860
DdeI CTNAG 5 cut(s) 405, 576, 638, 789, 837
DpnI GATC 2 cut(s) 52, 128
DpnII GATC 2 cut(s) 50, 126
DrdI GACNNNNNNGTC 1 cut(s) 697
DseDI GACNNNNNNGTC 1 cut(s) 697
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
Eco130I CCWWGG 3 cut(s) 117, 271, 410
Eco47I GGWCC 2 cut(s) 79, 418
Eco57I CTGAAG 2 cut(s) 612, 900
Eco88I CYCGRG 1 cut(s) 435
Eco91I GGTNACC 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 389
EcoRI GAATTC 1 cut(s) 914
EcoRII CCWGG 2 cut(s) 169, 253
EcoT14I CCWWGG 3 cut(s) 117, 271, 410
ErhI CCWWGG 3 cut(s) 117, 271, 410
FaeI CATG 8 cut(s) 221, 252, 414, 521, 628, 665, 854, 863
FaqI GGGAC 2 cut(s) 65, 467
FatI CATG 8 cut(s) 217, 248, 410, 517, 624, 661, 850, 859
FauI CCCGC 1 cut(s) 736
FbaI TGATCA 1 cut(s) 126
FblI GTMKAC 1 cut(s) 643
Fnu4HI GCNGC 1 cut(s) 532
FokI GGATG 6 cut(s) 134, 169, 277, 534, 620, 687
Fsp4HI GCNGC 1 cut(s) 532
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 532
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 253
HapII CCGG 5 cut(s) 71, 153, 340, 436, 450
Hin1II CATG 8 cut(s) 221, 252, 414, 521, 628, 665, 854, 863
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 5 cut(s) 95, 108, 134, 845, 875
HpaII CCGG 5 cut(s) 71, 153, 340, 436, 450
HphI GGTGA 3 cut(s) 81, 383, 860
Hpy166II GTNNAC 3 cut(s) 6, 316, 644
Hpy188I TCNGA 5 cut(s) 46, 406, 504, 674, 880
Hpy188III TCNNGA 3 cut(s) 32, 332, 922
Hpy8I GTNNAC 3 cut(s) 6, 316, 644
HpyAV CCTTC 3 cut(s) 150, 176, 835
HpyCH4III ACNGT 5 cut(s) 10, 323, 365, 458, 699
HpyCH4V TGCA 6 cut(s) 234, 290, 372, 461, 704, 799
HpyF3I CTNAG 5 cut(s) 405, 576, 638, 789, 837
Hsp92II CATG 8 cut(s) 221, 252, 414, 521, 628, 665, 854, 863
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 2 cut(s) 50, 126
LmnI GCTCC 5 cut(s) 334, 348, 599, 659, 924
LweI GCATC 1 cut(s) 299
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 3 cut(s) 365, 389, 677
MalI GATC 2 cut(s) 52, 128
MboI GATC 2 cut(s) 50, 126
MboII GAAGA 4 cut(s) 26, 371, 605, 700
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 4 cut(s) 99, 147, 265, 914
MlyI GAGTC 2 cut(s) 128, 854
MmeI TCCRAC 3 cut(s) 203, 681, 735
MnlI CCTC 7 cut(s) 97, 148, 269, 440, 589, 765, 826
MseI TTAA 2 cut(s) 102, 813
MslI CAYNNNNRTG 2 cut(s) 222, 623
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 5 cut(s) 71, 153, 340, 436, 450
MspR9I CCNGG 6 cut(s) 72, 171, 255, 436, 437, 451
MvaI CCWGG 2 cut(s) 171, 255
NciI CCSGG 4 cut(s) 72, 436, 437, 451
NcoI CCATGG 1 cut(s) 410
NdeII GATC 2 cut(s) 50, 126
NlaIII CATG 8 cut(s) 221, 252, 414, 521, 628, 665, 854, 863
NlaIV GGNNCC 4 cut(s) 81, 344, 655, 926
NmuCI GTSAC 1 cut(s) 389
NspI RCATGY 1 cut(s) 628
PciI ACATGT 1 cut(s) 624
PfeI GAWTC 3 cut(s) 95, 108, 875
PkrI GCNGC 1 cut(s) 533
PleI GAGTC 2 cut(s) 128, 853
PpsI GAGTC 2 cut(s) 128, 853
PscI ACATGT 1 cut(s) 624
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 169, 253
PspEI GGTNACC 1 cut(s) 389
PspGI CCWGG 2 cut(s) 169, 253
PspN4I GGNNCC 4 cut(s) 81, 344, 655, 926
PspPI GGNCC 2 cut(s) 79, 418
PstI CTGCAG 1 cut(s) 801
PsuI RGATCY 1 cut(s) 50
RseI CAYNNNNRTG 2 cut(s) 222, 623
SaqAI TTAA 2 cut(s) 102, 813
SatI GCNGC 1 cut(s) 532
Sau3AI GATC 2 cut(s) 50, 126
Sau96I GGNCC 2 cut(s) 79, 418
SchI GAGTC 2 cut(s) 128, 854
ScrFI CCNGG 6 cut(s) 72, 171, 255, 436, 437, 451
SduI GDGCHC 1 cut(s) 339
SetI ASST 8 cut(s) 198, 331, 355, 404, 427, 432, 649, 828
SfaNI GCATC 1 cut(s) 299
SfcI CTRYAG 1 cut(s) 797
SinI GGWCC 2 cut(s) 79, 418
SmaI CCCGGG 1 cut(s) 437
SmiMI CAYNNNNRTG 2 cut(s) 222, 623
SmlI CTYRAG 2 cut(s) 187, 896
SmoI CTYRAG 2 cut(s) 187, 896
Sse9I AATT 4 cut(s) 99, 147, 265, 914
SsiI CCGC 2 cut(s) 531, 729
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 6 cut(s) 70, 169, 253, 434, 435, 449
StyI CCWWGG 3 cut(s) 117, 271, 410
TaaI ACNGT 5 cut(s) 10, 323, 365, 458, 699
TasI AATT 4 cut(s) 99, 147, 265, 914
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 3 cut(s) 95, 108, 875
Tru1I TTAA 2 cut(s) 102, 813
Tru9I TTAA 2 cut(s) 102, 813
TscAI CASTG 1 cut(s) 463
TseFI GTSAC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 4 cut(s) 206, 372, 848, 907
TspMI CCCGGG 1 cut(s) 435
TspRI CASTG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 79, 418
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 1 cut(s) 914
XceI RCATGY 1 cut(s) 628
XmaI CCCGGG 1 cut(s) 435
XmaJI CCTAGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 643
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.