Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017993

Physical Location & Seq

Genomic Coordinates Forward (+)

58752915 .. 58753850

Gene Structure 936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG388700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGTCTTTAGTTGAAGAATCACCAGACTTTCTCCAAGTCTTTTCTGATGGAACTGTGAAACGCTTTGCACCCGGAATAGTCCCTGCCTCATCAGAACCATCTAATGGATACAAGTTCAAGGATGTAATCATTGACTCGTCGAAACCAATTACTGGGAGGGTTTTCATTCCTAGTGATCCAACATCCTTGAGTAAGCTTCCAGTTGTGGTTTATTTTCATGGTGGAGGCTTCTGCATTGGCTCAACCACATGGATTGGTTACCATCATTTCCTAGGAGACTTATCCGTTTCATCCCAATCGATTGTTCTTTCAATTGACTACCGTTTGGCTCCAGAGAACCGGCTTCCCATAGCTTATGAAGACTGTTATGACTCACTTGTTTGGCTTGGTCACCAAGCAAGCTGTGATCCATGGCTGAACAAGGCTGACCTCTCCCGGGTTTTCTTATCCGGGGACAGTGCTGGTGGGAACATAGCACAATATGTTGCTGTGAAAACTATCCGCAATTCACTCATTCATGTCAAGATAAGAGGACTGTTGTTGATACATCCTTATTTTGGGAGTGAAAAGAGAACTGAGAAAGAGATGTCGACGGATCAAGAGGCAGTTGGGAATGTGGCAAGCAATGACATGTTCTGGAGACTTAGTATACCTGAAGGTTCCAATCGCGATTATTTCGGATGCAACTTTGACAAGACAGAACTGTCTGTAATCCAATGGCGCAATGAGTTTCCTGCTGTGACAGTTTATGTTGCTGAACTGGATTTTTTGAAAGAGAGGGGTGTAATGTATGCAGAGTTTCTGCAAAGAAAAGGAGTTGAAGTGAAGCTGGTCGAGGCTGAGAATGAGTCCCATGTGTTTCATGTATTCAAACCTGAATGTGAGGCAACCCGTTTGCTTCAGAAAAACATGAAGGAGTTCATTTGGATCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

311

Amino Acids

35.1

Weight (kDa)

5.54

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	54 - 110	4.8e-07	Carboxylesterase family
BD-FAE	PF20434	62 - 167	6.2e-13	BD-FAE
Abhydrolase_3	PF07859	69 - 288	5.2e-54	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017993)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29190
malus_domestica	MD15G1124600.v1.1
prunus_persica	Prupe.1G480100_v2.0.a1
pyrus_communis	pycom15g11220
rosa_chinensis	RchiOBHm_Chr6g0298051
rosa_laevigata	RLG00000011540
rosa_multiflora	Rmu_sc0002800.1_g000016
rosa_rugosa	Rorug06G0278200
rosa_samantha	Rh6AG388700 Rh6CG402900
rosa_wichuraiana	Rw6G033930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
AccB7I	CCANNNNNTGG	2 cut(s)	104, 152
AccI	GTMKAC	2 cut(s)	590, 649
AccII	CGCG	1 cut(s)	669
AciI	CCGC	1 cut(s)	502
AclWI	GGATC	4 cut(s)	170, 401, 603, 935
AcuI	CTGAAG	2 cut(s)	675, 884
AfiI	CCNNNNNNNGG	4 cut(s)	104, 152, 436, 557
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	6 cut(s)	14, 118, 312, 772, 821, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	196, 353, 402, 829
AluI	AGCT	4 cut(s)	196, 353, 402, 829
Alw26I	GTCTC	2 cut(s)	270, 634
AlwI	GGATC	4 cut(s)	170, 401, 603, 935
Ama87I	CYCGRG	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	917
AspA2I	CCTAGG	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	723
AsuC2I	CCSGG	4 cut(s)	72, 436, 437, 451
AsuHPI	GGTGA	2 cut(s)	12, 383
AvaI	CYCGRG	1 cut(s)	435
AvrII	CCTAGG	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	366
BccI	CCATC	3 cut(s)	41, 106, 270
BciVI	GTATCC	1 cut(s)	101
BcnI	CCSGG	4 cut(s)	72, 436, 437, 451
BcoDI	GTCTC	2 cut(s)	270, 634
BfaI	CTAG	2 cut(s)	171, 272
BfuI	GTATCC	1 cut(s)	101
BlnI	CCTAGG	1 cut(s)	271
Bme1390I	CCNGG	4 cut(s)	72, 436, 437, 451
BmeT110I	CYCGRG	1 cut(s)	435
BmiI	GGNNCC	2 cut(s)	330, 661
BmrFI	CCNGG	4 cut(s)	72, 436, 437, 451
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	671
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	2 cut(s)	315, 658
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	4 cut(s)	72, 436, 437, 451
Bsa29I	ATCGAT	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	271, 410, 435, 450
BsaXI	ACNNNNNCTCC	4 cut(s)	631, 661, 807, 837
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 152, 436, 557
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	3 cut(s)	157, 200, 765
Bse3DI	GCAATG	2 cut(s)	631, 730
BseCI	ATCGAT	1 cut(s)	299
BseDI	CCNNGG	4 cut(s)	271, 410, 435, 450
BseGI	GGATG	5 cut(s)	127, 182, 290, 547, 686
BseLI	CCNNNNNNNGG	4 cut(s)	104, 152, 436, 557
BseMI	GCAATG	2 cut(s)	631, 730
BseMII	CTCAG	2 cut(s)	567, 831
BseNI	ACTGG	3 cut(s)	157, 200, 765
Bsh1236I	CGCG	1 cut(s)	669
BshVI	ATCGAT	1 cut(s)	299
BsiHKCI	CYCGRG	1 cut(s)	435
BsiSI	CCGG	4 cut(s)	72, 340, 436, 450
BslFI	GGGAC	3 cut(s)	65, 467, 835
BslI	CCNNNNNNNGG	4 cut(s)	104, 152, 436, 557
BsmAI	GTCTC	2 cut(s)	270, 634
BsmFI	GGGAC	3 cut(s)	65, 467, 835
BsoBI	CYCGRG	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	175, 406, 595, 927
Bsp19I	CCATGG	1 cut(s)	410
Bsp68I	TCGCGA	1 cut(s)	669
BspACI	CCGC	1 cut(s)	502
BspCNI	CTCAG	2 cut(s)	568, 832
BspDI	ATCGAT	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	330, 661
BspPI	GGATC	4 cut(s)	170, 401, 603, 935
BsrDI	GCAATG	2 cut(s)	631, 730
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	157, 200, 765
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	4 cut(s)	271, 410, 435, 450
BssMI	GATC	4 cut(s)	175, 406, 595, 927
BssNAI	GTATAC	1 cut(s)	650
BssT1I	CCWWGG	2 cut(s)	271, 410
Bst1107I	GTATAC	1 cut(s)	650
Bst4CI	ACNGT	7 cut(s)	55, 323, 365, 458, 537, 705, 745
BstC8I	GCNNGC	2 cut(s)	400, 622
BstDEI	CTNAG	3 cut(s)	576, 644, 840
BstDSI	CCRYGG	1 cut(s)	410
BstEII	GGTNACC	2 cut(s)	257, 389
BstF5I	GGATG	5 cut(s)	127, 182, 290, 547, 686
BstFNI	CGCG	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	723
BstKTI	GATC	4 cut(s)	178, 409, 598, 930
BstMAI	GTCTC	2 cut(s)	270, 634
BstMBI	GATC	4 cut(s)	175, 406, 595, 927
BstNSI	RCATGY	1 cut(s)	634
BstPI	GGTNACC	2 cut(s)	257, 389
BstSCI	CCNGG	4 cut(s)	70, 434, 435, 449
BstUI	CGCG	1 cut(s)	669
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	927
BstYI	RGATCY	1 cut(s)	927
BstZ17I	GTATAC	1 cut(s)	650
Bsu15I	ATCGAT	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	101
BsuTUI	ATCGAT	1 cut(s)	299
BtgI	CCRYGG	1 cut(s)	410
BtsCI	GGATG	5 cut(s)	127, 182, 290, 547, 686
BtsIMutI	CAGTG	1 cut(s)	463
BtuMI	TCGCGA	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	400, 622
CfoI	GCGC	1 cut(s)	723
Cfr10I	RCCGGY	1 cut(s)	339
Cfr9I	CCCGGG	1 cut(s)	435
ClaI	ATCGAT	1 cut(s)	299
CspCI	CAANNNNNGTGG	2 cut(s)	235, 270
CviAII	CATG	8 cut(s)	218, 249, 411, 518, 631, 854, 863, 910
DdeI	CTNAG	3 cut(s)	576, 644, 840
DpnI	GATC	4 cut(s)	177, 408, 597, 929
DpnII	GATC	4 cut(s)	175, 406, 595, 927
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
Eco130I	CCWWGG	2 cut(s)	271, 410
Eco57I	CTGAAG	2 cut(s)	675, 884
Eco88I	CYCGRG	1 cut(s)	435
Eco91I	GGTNACC	2 cut(s)	257, 389
EcoO65I	GGTNACC	2 cut(s)	257, 389
EcoT14I	CCWWGG	2 cut(s)	271, 410
ErhI	CCWWGG	2 cut(s)	271, 410
FaeI	CATG	8 cut(s)	221, 252, 414, 521, 634, 857, 866, 913
FaqI	GGGAC	3 cut(s)	65, 467, 835
FatI	CATG	8 cut(s)	217, 248, 410, 517, 630, 853, 862, 909
FblI	GTMKAC	2 cut(s)	590, 649
FokI	GGATG	5 cut(s)	134, 169, 277, 534, 693
FspBI	CTAG	2 cut(s)	171, 272
GlaI	GCGC	1 cut(s)	722
GsuI	CTGGAG	2 cut(s)	315, 658
HapII	CCGG	4 cut(s)	72, 340, 436, 450
HhaI	GCGC	1 cut(s)	723
Hin1II	CATG	8 cut(s)	221, 252, 414, 521, 634, 857, 866, 913
Hin6I	GCGC	1 cut(s)	721
HinP1I	GCGC	1 cut(s)	721
HincII	GTYRAC	1 cut(s)	591
HindII	GTYRAC	1 cut(s)	591
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	17, 134, 371, 848
HpaII	CCGG	4 cut(s)	72, 340, 436, 450
HphI	GGTGA	2 cut(s)	12, 383
Hpy166II	GTNNAC	2 cut(s)	591, 650
Hpy188I	TCNGA	4 cut(s)	46, 94, 680, 903
Hpy188III	TCNNGA	5 cut(s)	332, 523, 599, 637, 668
Hpy8I	GTNNAC	2 cut(s)	591, 650
Hpy99I	CGWCG	2 cut(s)	142, 595
HpyAV	CCTTC	2 cut(s)	650, 907
HpyCH4III	ACNGT	7 cut(s)	55, 323, 365, 458, 537, 705, 745
HpyCH4V	TGCA	5 cut(s)	68, 234, 684, 794, 805
HpyF3I	CTNAG	3 cut(s)	576, 644, 840
Hsp92II	CATG	8 cut(s)	221, 252, 414, 521, 634, 857, 866, 913
HspAI	GCGC	1 cut(s)	721
Kzo9I	GATC	4 cut(s)	175, 406, 595, 927
LmnI	GCTCC	1 cut(s)	334
LweI	GCATC	1 cut(s)	671
MaeI	CTAG	2 cut(s)	171, 272
MaeIII	GTNAC	3 cut(s)	257, 389, 739
MalI	GATC	4 cut(s)	177, 408, 597, 929
MboI	GATC	4 cut(s)	175, 406, 595, 927
MboII	GAAGA	2 cut(s)	26, 371
MfeI	CAATTG	1 cut(s)	312
MflI	RGATCY	1 cut(s)	927
MluCI	AATT	3 cut(s)	147, 312, 505
MlyI	GAGTC	3 cut(s)	128, 365, 857
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	9 cut(s)	97, 150, 218, 440, 524, 595, 771, 829, 877
MroXI	GAANNNNTTC	1 cut(s)	917
MspI	CCGG	4 cut(s)	72, 340, 436, 450
MspR9I	CCNGG	4 cut(s)	72, 436, 437, 451
MunI	CAATTG	1 cut(s)	312
MvnI	CGCG	1 cut(s)	669
NciI	CCSGG	4 cut(s)	72, 436, 437, 451
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	4 cut(s)	175, 406, 595, 927
NlaIII	CATG	8 cut(s)	221, 252, 414, 521, 634, 857, 866, 913
NlaIV	GGNNCC	2 cut(s)	330, 661
NmuCI	GTSAC	2 cut(s)	389, 739
NruI	TCGCGA	1 cut(s)	669
NspI	RCATGY	1 cut(s)	634
PciI	ACATGT	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	1 cut(s)	17
PflMI	CCANNNNNTGG	2 cut(s)	104, 152
PleI	GAGTC	3 cut(s)	128, 365, 856
PpsI	GAGTC	3 cut(s)	128, 365, 856
PscI	ACATGT	1 cut(s)	630
PspEI	GGTNACC	2 cut(s)	257, 389
PspN4I	GGNNCC	2 cut(s)	330, 661
PsuI	RGATCY	1 cut(s)	927
RruI	TCGCGA	1 cut(s)	669
SalI	GTCGAC	1 cut(s)	589
Sau3AI	GATC	4 cut(s)	175, 406, 595, 927
SchI	GAGTC	3 cut(s)	128, 365, 857
ScrFI	CCNGG	4 cut(s)	72, 436, 437, 451
SetI	ASST	8 cut(s)	198, 355, 404, 432, 655, 661, 831, 877
SfaNI	GCATC	1 cut(s)	671
SmaI	CCCGGG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	147, 312, 505
SsiI	CCGC	1 cut(s)	502
SspMI	CTAG	2 cut(s)	171, 272
StyD4I	CCNGG	4 cut(s)	70, 434, 435, 449
StyI	CCWWGG	2 cut(s)	271, 410
TaaI	ACNGT	7 cut(s)	55, 323, 365, 458, 537, 705, 745
TaqI	TCGA	4 cut(s)	140, 299, 590, 834
TasI	AATT	3 cut(s)	147, 312, 505
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	2 cut(s)	389, 739
Tsp45I	GTSAC	2 cut(s)	389, 739
TspDTI	ATGAA	8 cut(s)	154, 206, 279, 372, 506, 851, 910, 926
TspGWI	ACGGA	2 cut(s)	274, 608
TspMI	CCCGGG	1 cut(s)	435
TspRI	CASTG	1 cut(s)	463
Van91I	CCANNNNNTGG	2 cut(s)	104, 152
XceI	RCATGY	1 cut(s)	634
XmaI	CCCGGG	1 cut(s)	435
XmaJI	CCTAGG	1 cut(s)	271
XmiI	GTMKAC	2 cut(s)	590, 649
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	2 cut(s)	171, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.