Prupe.1G518700_v2.0.a1

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016156
Physical Location & Seq
Reverse (-)
42595045 .. 42597056
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G518700.1

Sequence Viewer

Length: 1230 bp
ATGGCTTGGTGGCGCCTCCTCGTTTCCAAAACCCCCACCGCCACACCCCCATCTCTTCTCCCAAACCCAAACCCTAACCCTAATCGCCTGCAGCTCTCCCTCCTCCTCCTCCAAACCTCTCCATTCTCCACCTCCTTCCTCATCACCAAAACCCCCAAAAAATTTAAAAAAAAGCGCAAGAAAGACGAAAGCCCTCGAACGAAGCTCGTCCAGACCCAACCCAACCTCATCCCCCACTTCGAGCACATCGTCGAGCGCGATGCCCACTACCGGTTCCTCACAAAATCCAGAGACTTCCTCTCCAAGCAGCCCCACCGCGTCCTCCGCCTCGACGACGCCGGCAAGCTCCACCGAGAACTCGGCTTCCCTCGCGGCCGGAAAATCGCCCGATTCCTCCAGCGCCACCCCCTTCTGTTCCAAACCTACCGCCATGTCGACAACAAAATGTGGATCGGCTTCACCGAGTTCATGGAAGATTTGCTCGAACAGGAACGAGTCATTGTCGACTCAATGGAATCGGACCGAGTTAACAAGGTTCGTAAATTGCTTATGATGTCCTCGAACAAGCGTATCCCTTTGAGTAAAATCTACCATTGCAGGTCCTTATTTGGAATCCCAGAAGATTTTCGAGACCGGGTTTCGAAGTACCCTAATTATTTTCGAACTGTGATTGAGGAAGGTGGGAAGAGAATGCTTGAATTGGTGAATTGGGATCCGTTGTTGGCGGTGAGCACTTTGGAGAGGGAGTTTATTGTTGACGAGGAGAAAGTGAAGAGGGCTTTTAGGTTTCCAGTGAAGCATGGGAAGGATTTGGGTTTGGAAAAAGAGGATGAGAGGAAATTGAACTTATTGAACTCGCTTCCTCTGGTTTCGCCGTATTCGGATGGGTCAAGATTCGACCTTTGGACTCTGGAAGCGGAGAAGTACAGAGTGGGAGTGTTGCATGAGTTTTTGAGCTTGACATTGGAGAAGAGGGCTTCTATACACCATGTTGTGGAGTTCAAGGAGGAGTTTAGTTTGACCAAGCATACTTATCAGATGCTTTTTAAGCAGCCCAGAACGTTTTATCTCGCGGGGACAGAGATGAATTGGGTTGTTTTCTTGAAAGATGCTTATGACCAAAATGGGGTTTTGATTGAGAAGGATCCGCAGGTGGTTTTCAATGAGAAGCTGTATAAGTATGCTGAAATGAAGGAAATGGAACAGGGTTGTGTTGATCAATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

410

Amino Acids

48.57

Weight (kDa)

9.56

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08940
fragaria_vesca FvH4_2g09730 FvH4_2g09730
malus_domestica MD00G1009900.v1.1
prunus_persica Prupe.1G518700_v2.0.a1
pyrus_communis pycom08g15830 pycom15g33270
rosa_chinensis RchiOBHm_Chr7g0238641
rosa_laevigata RLG00000000822
rosa_multiflora Rmu_sc0000023.1_g000009 Rmu_sc0030975.1_g000001
rosa_roxburghii Rroxscaffold_3G00221660
rosa_rugosa Rorug07G0322500
rosa_samantha Rh7BG448100
rosa_wichuraiana Rw7G039810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1141
Acc36I ACCTGC 2 cut(s) 588, 1141
AccB1I GGYRCC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 994
AccI GTMKAC 2 cut(s) 435, 504
AccII CGCG 4 cut(s) 258, 318, 372, 1073
AciI CCGC 9 cut(s) 39, 316, 325, 372, 427, 725, 917, 1073, 1148
AclI AACGTT 1 cut(s) 1061
AclWI GGATC 5 cut(s) 458, 707, 720, 1139, 1152
AcoI YGGCCR 1 cut(s) 373
AcsI RAATTY 1 cut(s) 161
AcyI GRCGYC 2 cut(s) 13, 336
AfaI GTAC 2 cut(s) 647, 926
AfiI CCNNNNNNNGG 3 cut(s) 270, 994, 1126
AgeI ACCGGT 1 cut(s) 270
AgsI TTSAA 6 cut(s) 698, 844, 853, 1003, 1105, 1162
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 5 cut(s) 94, 205, 346, 957, 1171
AluI AGCT 5 cut(s) 94, 205, 346, 957, 1171
Alw21I GWGCWC 2 cut(s) 246, 734
Alw26I GTCTC 2 cut(s) 285, 624
AlwI GGATC 5 cut(s) 458, 707, 720, 1139, 1152
AoxI GGCC 1 cut(s) 373
ApeKI GCWGC 3 cut(s) 91, 307, 1051
ApoI RAATTY 1 cut(s) 161
AsiGI ACCGGT 1 cut(s) 270
Asp700I GAANNNNTTC 1 cut(s) 624
AspLEI GCGC 4 cut(s) 15, 177, 258, 402
AspS9I GGNCC 2 cut(s) 520, 600
AsuC2I CCSGG 1 cut(s) 635
AsuHPI GGTGA 4 cut(s) 136, 451, 715, 739
AsuII TTCGAA 2 cut(s) 641, 661
AvaII GGWCC 2 cut(s) 520, 600
BaeI ACNNNNGTAYC 2 cut(s) 553, 586
BamHI GGATCC 2 cut(s) 712, 1144
BanI GGYRCC 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 246, 734
BbvI GCAGC 3 cut(s) 103, 319, 1063
BccI CCATC 2 cut(s) 58, 878
BceAI ACGGC 1 cut(s) 859
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BciVI GTATCC 1 cut(s) 581
BclI TGATCA 1 cut(s) 1216
BcnI CCSGG 1 cut(s) 635
BcoDI GTCTC 2 cut(s) 285, 624
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 2 cut(s) 16, 403
BfuAI ACCTGC 2 cut(s) 588, 1141
BfuI GTATCC 1 cut(s) 581
BisI GCNGC 4 cut(s) 92, 308, 373, 1052
BlsI GCNGC 4 cut(s) 93, 309, 374, 1053
Bme1390I CCNGG 1 cut(s) 635
Bme18I GGWCC 2 cut(s) 520, 600
BmgT120I GGNCC 2 cut(s) 520, 600
BmiI GGNNCC 4 cut(s) 14, 275, 714, 1146
BmrFI CCNGG 1 cut(s) 635
BmsI GCATC 3 cut(s) 250, 1029, 1099
BplI GAGNNNNNCTC 2 cut(s) 282, 314
BpmI CTGGAG 1 cut(s) 380
Bpu14I TTCGAA 2 cut(s) 641, 661
BpuMI CCSGG 1 cut(s) 635
BsaHI GRCGYC 2 cut(s) 13, 336
BsaI GGTCTC 1 cut(s) 624
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 731, 761
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 994, 1126
Bse118I RCCGGY 2 cut(s) 270, 338
Bse1I ACTGG 1 cut(s) 791
Bse3DI GCAATG 1 cut(s) 592
BseGI GGATG 3 cut(s) 228, 835, 889
BseLI CCNNNNNNNGG 3 cut(s) 270, 994, 1126
BseMI GCAATG 1 cut(s) 592
BseNI ACTGG 1 cut(s) 791
BseRI GAGGAG 6 cut(s) 8, 92, 95, 98, 776, 1022
BseX3I CGGCCG 1 cut(s) 373
BseXI GCAGC 3 cut(s) 103, 319, 1063
Bsh1236I CGCG 4 cut(s) 258, 318, 372, 1073
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 1 cut(s) 375
BshNI GGYRCC 1 cut(s) 12
BshTI ACCGGT 1 cut(s) 270
BsiEI CGRYCG 1 cut(s) 376
BsiHKAI GWGCWC 2 cut(s) 246, 734
BsiSI CCGG 4 cut(s) 271, 339, 376, 634
BslFI GGGAC 1 cut(s) 1090
BslI CCNNNNNNNGG 3 cut(s) 270, 994, 1126
BsmAI GTCTC 2 cut(s) 285, 624
BsmFI GGGAC 1 cut(s) 1090
BsmI GAATGC 1 cut(s) 696
BsnI GGCC 1 cut(s) 375
Bso31I GGTCTC 1 cut(s) 624
Bsp119I TTCGAA 2 cut(s) 641, 661
Bsp1286I GDGCHC 2 cut(s) 246, 734
Bsp143I GATC 4 cut(s) 450, 712, 1144, 1216
BspACI CCGC 9 cut(s) 39, 316, 325, 372, 427, 725, 917, 1073, 1148
BspANI GGCC 1 cut(s) 375
BspFNI CGCG 4 cut(s) 258, 318, 372, 1073
BspLI GGNNCC 4 cut(s) 14, 275, 714, 1146
BspMAI CTGCAG 1 cut(s) 93
BspMI ACCTGC 2 cut(s) 588, 1141
BspPI GGATC 5 cut(s) 458, 707, 720, 1139, 1152
BspT104I TTCGAA 2 cut(s) 641, 661
BspT107I GGYRCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 624
BsrDI GCAATG 1 cut(s) 592
BsrFI RCCGGY 2 cut(s) 270, 338
BsrI ACTGG 1 cut(s) 791
BssAI RCCGGY 2 cut(s) 270, 338
BssMI GATC 4 cut(s) 450, 712, 1144, 1216
BssNI GRCGYC 2 cut(s) 13, 336
Bst4CI ACNGT 1 cut(s) 667
Bst6I CTCTTC 4 cut(s) 60, 680, 767, 965
BstACI GRCGYC 2 cut(s) 13, 336
BstBI TTCGAA 2 cut(s) 641, 661
BstC8I GCNNGC 3 cut(s) 89, 340, 344
BstF5I GGATG 3 cut(s) 228, 835, 889
BstFNI CGCG 4 cut(s) 258, 318, 372, 1073
BstH2I RGCGCY 2 cut(s) 16, 403
BstHHI GCGC 4 cut(s) 15, 177, 258, 402
BstKTI GATC 4 cut(s) 453, 715, 1147, 1219
BstMAI GTCTC 2 cut(s) 285, 624
BstMBI GATC 4 cut(s) 450, 712, 1144, 1216
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 3 cut(s) 324, 369, 1048
BstSCI CCNGG 1 cut(s) 633
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 4 cut(s) 258, 318, 372, 1073
BstV1I GCAGC 3 cut(s) 103, 319, 1063
BstX2I RGATCY 2 cut(s) 712, 1144
BstYI RGATCY 2 cut(s) 712, 1144
BstZI CGGCCG 1 cut(s) 373
BsuI GTATCC 1 cut(s) 581
BsuRI GGCC 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 3 cut(s) 228, 835, 889
BtsIMutI CAGTG 1 cut(s) 798
BveI ACCTGC 2 cut(s) 588, 1141
Cac8I GCNNGC 3 cut(s) 89, 340, 344
CfoI GCGC 4 cut(s) 15, 177, 258, 402
Cfr10I RCCGGY 2 cut(s) 270, 338
Cfr13I GGNCC 2 cut(s) 520, 600
CpoI CGGWCCG 1 cut(s) 520
CseI GACGC 2 cut(s) 307, 344
Csp6I GTAC 2 cut(s) 646, 925
CspAI ACCGGT 1 cut(s) 270
CspI CGGWCCG 1 cut(s) 520
CviAII CATG 5 cut(s) 431, 469, 800, 944, 989
CviQI GTAC 2 cut(s) 646, 925
DinI GGCGCC 1 cut(s) 14
DpnI GATC 4 cut(s) 452, 714, 1146, 1218
DpnII GATC 4 cut(s) 450, 712, 1144, 1216
DraI TTTAAA 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 373
EagI CGGCCG 1 cut(s) 373
Eam1104I CTCTTC 4 cut(s) 60, 680, 767, 965
EarI CTCTTC 4 cut(s) 60, 680, 767, 965
EciI GGCGGA 1 cut(s) 314
EclXI CGGCCG 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 624
Eco47I GGWCC 2 cut(s) 520, 600
Eco52I CGGCCG 1 cut(s) 373
EcoO109I RGGNCCY 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 14
EheI GGCGCC 1 cut(s) 14
FaeI CATG 5 cut(s) 434, 472, 803, 947, 992
FaqI GGGAC 1 cut(s) 1090
FatI CATG 5 cut(s) 430, 468, 799, 943, 988
FauI CCCGC 1 cut(s) 1066
FbaI TGATCA 1 cut(s) 1216
FblI GTMKAC 2 cut(s) 435, 504
Fnu4HI GCNGC 4 cut(s) 92, 308, 373, 1052
FokI GGATG 3 cut(s) 215, 842, 896
Fsp4HI GCNGC 4 cut(s) 92, 308, 373, 1052
GlaI GCGC 4 cut(s) 14, 176, 257, 401
GluI GCNGC 4 cut(s) 92, 308, 373, 1052
GsuI CTGGAG 1 cut(s) 380
HaeII RGCGCY 2 cut(s) 16, 403
HaeIII GGCC 1 cut(s) 375
HapII CCGG 4 cut(s) 271, 339, 376, 634
HgaI GACGC 2 cut(s) 307, 344
HhaI GCGC 4 cut(s) 15, 177, 258, 402
Hin1I GRCGYC 2 cut(s) 13, 336
Hin1II CATG 5 cut(s) 434, 472, 803, 947, 992
Hin6I GCGC 4 cut(s) 13, 175, 256, 400
HinP1I GCGC 4 cut(s) 13, 175, 256, 400
HincII GTYRAC 4 cut(s) 436, 505, 529, 757
HindII GTYRAC 4 cut(s) 436, 505, 529, 757
HinfI GANTC 7 cut(s) 390, 495, 506, 515, 612, 894, 907
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 4 cut(s) 271, 339, 376, 634
HphI GGTGA 4 cut(s) 136, 451, 715, 739
Hpy166II GTNNAC 4 cut(s) 436, 505, 529, 757
Hpy188I TCNGA 3 cut(s) 520, 883, 1038
Hpy188III TCNNGA 6 cut(s) 211, 288, 629, 891, 911, 1102
Hpy8I GTNNAC 4 cut(s) 436, 505, 529, 757
Hpy99I CGWCG 3 cut(s) 254, 335, 338
HpyAV CCTTC 6 cut(s) 145, 419, 671, 799, 1135, 1186
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4IV ACGT 1 cut(s) 1061
HpyCH4V TGCA 3 cut(s) 91, 597, 943
HpyF10VI GCNNNNNNNGC 3 cut(s) 324, 369, 1048
HpySE526I ACGT 1 cut(s) 1061
Hsp92I GRCGYC 2 cut(s) 13, 336
Hsp92II CATG 5 cut(s) 434, 472, 803, 947, 992
HspAI GCGC 4 cut(s) 13, 175, 256, 400
KasI GGCGCC 1 cut(s) 12
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 1216
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 4 cut(s) 450, 712, 1144, 1216
LmnI GCTCC 1 cut(s) 351
Lsp1109I GCAGC 3 cut(s) 103, 319, 1063
LweI GCATC 3 cut(s) 250, 1029, 1099
MaeII ACGT 1 cut(s) 1061
MalI GATC 4 cut(s) 452, 714, 1146, 1218
MboI GATC 4 cut(s) 450, 712, 1144, 1216
MboII GAAGA 6 cut(s) 47, 485, 632, 697, 784, 982
MflI RGATCY 2 cut(s) 712, 1144
MhlI GDGCHC 2 cut(s) 246, 734
MluCI AATT 7 cut(s) 161, 542, 652, 698, 706, 839, 1087
Mly113I GGCGCC 1 cut(s) 13
MlyI GAGTC 3 cut(s) 500, 504, 901
MroNI GCCGGC 1 cut(s) 338
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 3 cut(s) 165, 528, 1047
MspI CCGG 4 cut(s) 271, 339, 376, 634
MspR9I CCNGG 1 cut(s) 635
Mva1269I GAATGC 1 cut(s) 696
MvnI CGCG 4 cut(s) 258, 318, 372, 1073
MwoI GCNNNNNNNGC 3 cut(s) 324, 369, 1048
NaeI GCCGGC 1 cut(s) 340
NarI GGCGCC 1 cut(s) 13
NciI CCSGG 1 cut(s) 635
NdeII GATC 4 cut(s) 450, 712, 1144, 1216
NgoMIV GCCGGC 1 cut(s) 338
NlaIII CATG 5 cut(s) 434, 472, 803, 947, 992
NlaIV GGNNCC 4 cut(s) 14, 275, 714, 1146
NmeAIII GCCGAG 1 cut(s) 339
NspV TTCGAA 2 cut(s) 641, 661
PaqCI CACCTGC 1 cut(s) 1141
PcsI WCGNNNNNNNCGW 3 cut(s) 246, 255, 459
PctI GAATGC 1 cut(s) 696
PdiI GCCGGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 4 cut(s) 390, 515, 612, 894
PflMI CCANNNNNTGG 1 cut(s) 994
PinAI ACCGGT 1 cut(s) 270
PkrI GCNGC 4 cut(s) 93, 309, 374, 1053
PleI GAGTC 3 cut(s) 500, 503, 901
PluTI GGCGCC 1 cut(s) 16
PpsI GAGTC 3 cut(s) 500, 503, 901
PpuMI RGGWCCY 1 cut(s) 600
Psp1406I AACGTT 1 cut(s) 1061
Psp5II RGGWCCY 1 cut(s) 600
PspN4I GGNNCC 4 cut(s) 14, 275, 714, 1146
PspPI GGNCC 2 cut(s) 520, 600
PspPPI RGGWCCY 1 cut(s) 600
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 712, 1144
RsaI GTAC 2 cut(s) 647, 926
RsaNI GTAC 2 cut(s) 646, 925
Rsr2I CGGWCCG 1 cut(s) 520
RsrII CGGWCCG 1 cut(s) 520
SalI GTCGAC 2 cut(s) 434, 503
SaqAI TTAA 3 cut(s) 165, 528, 1047
SatI GCNGC 4 cut(s) 92, 308, 373, 1052
Sau3AI GATC 4 cut(s) 450, 712, 1144, 1216
Sau96I GGNCC 2 cut(s) 520, 600
SchI GAGTC 3 cut(s) 500, 504, 901
ScrFI CCNGG 1 cut(s) 635
SduI GDGCHC 2 cut(s) 246, 734
SfaNI GCATC 3 cut(s) 250, 1029, 1099
SfcI CTRYAG 1 cut(s) 89
SfoI GGCGCC 1 cut(s) 14
SfuI TTCGAA 2 cut(s) 641, 661
SinI GGWCC 2 cut(s) 520, 600
Sse9I AATT 7 cut(s) 161, 542, 652, 698, 706, 839, 1087
SsiI CCGC 9 cut(s) 39, 316, 325, 372, 427, 725, 917, 1073, 1148
SspDI GGCGCC 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 633
TaaI ACNGT 1 cut(s) 667
TaiI ACGT 1 cut(s) 1064
TaqII GACCGA 1 cut(s) 537
TasI AATT 7 cut(s) 161, 542, 652, 698, 706, 839, 1087
TatI WGTACW 1 cut(s) 924
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 4 cut(s) 390, 515, 612, 894
Tru1I TTAA 3 cut(s) 165, 528, 1047
Tru9I TTAA 3 cut(s) 165, 528, 1047
TscAI CASTG 1 cut(s) 798
TseI GCWGC 3 cut(s) 91, 307, 1051
TspDTI ATGAA 3 cut(s) 457, 1100, 1205
TspGWI ACGGA 1 cut(s) 705
TspRI CASTG 1 cut(s) 798
Van91I CCANNNNNTGG 1 cut(s) 994
VpaK11BI GGWCC 2 cut(s) 520, 600
XapI RAATTY 1 cut(s) 161
XmiI GTMKAC 2 cut(s) 435, 504
XmnI GAANNNNTTC 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.