Rmu_sc0030975.1_g000001

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030975.1
OG0016156
Physical Location & Seq
Reverse (-)
2 .. 2017
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030975.1_g000001.1.cds

Sequence Viewer

Length: 1154 bp
atgagctgtattgatgagcagttaagggaaaaagctccagggtggatagagaacatgacaaagttgcttctactgcatttgttcatcacgctactgtttgcaagcttggggtcaaccttaggatggagcttcgtgaaatgcatcacggatattgagataatgaagagatataattgggcacgagatgttagagactatttgctattgtgtttgcaagctgctacaaagggaaaagcaaggcaaatcagtggatgtgtaacattaatctcgattgataatgtagttgccgacaacaatagaagcaaatatggcaaggaaaacagtgacgatgactttgagaaccctccaacaaagcatgctactattgcacagaaaaaggggcagaaaagacaaagagaagaaaagaaggccacagtagctgccaaaaaaccaaccaaaaagcagtcttccacagtggtagtggtagcagggttttggaaaatggcttggtggcgccttcttctgactcccaaaacctcaaaaccatcctccacagccaaaaccctaaaccctaatcaaactctcctcttcacctccccattctccacctccttcctgatcaccaaaaccccgaagaaattcaagaagcgccgcagaaaccaagacagcccgcgaaccaagccggtccagacccaacccaacctcctcccccacctcgaacgcatcgtcactcgcgacgcccacttccgattcctcaccaaatccaaagaacacctctcgaagcagccccaccgcgtcctccgcctcgacgacgccggcaagctccaccgcgagctcggcttcccccgcggccggaaagtctccaggtccctccagcgccaccccttggtcttcgaaacgtaccggcacgacgacaataagctgtggattggattcacggagttgatggaaggtttgatggaagaggaggtggcgttgatggaggcgatggaaggggacagagtcaacaaggtgaggaagttactgatgatgtcagcgaataagcggattccgctgagcaagatttatcactgcaggttgttgtttgggattcctgaagattttcgggacagggtggcgaagtatcctgattatttcagggttgtggttgagggtgatgggaagagagtgctgga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

384

Amino Acids

44.46

Weight (kDa)

10.06

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08940
fragaria_vesca FvH4_2g09730 FvH4_2g09730
malus_domestica MD00G1009900.v1.1
prunus_persica Prupe.1G518700_v2.0.a1
pyrus_communis pycom08g15830 pycom15g33270
rosa_chinensis RchiOBHm_Chr7g0238641
rosa_laevigata RLG00000000822
rosa_multiflora Rmu_sc0000023.1_g000009 Rmu_sc0030975.1_g000001
rosa_roxburghii Rroxscaffold_3G00221660
rosa_rugosa Rorug07G0322500
rosa_samantha Rh7BG448100
rosa_wichuraiana Rw7G039810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1044
AccB1I GGYRCC 1 cut(s) 492
AccB7I CCANNNNNTGG 1 cut(s) 865
AccII CGCG 5 cut(s) 652, 714, 774, 810, 828
AciI CCGC 9 cut(s) 631, 650, 772, 781, 808, 826, 828, 1024, 1031
AcoI YGGCCR 1 cut(s) 829
AcsI RAATTY 1 cut(s) 617
AcuI CTGAAG 1 cut(s) 1095
AcyI GRCGYC 3 cut(s) 493, 717, 792
AfaI GTAC 1 cut(s) 881
AfiI CCNNNNNNNGG 3 cut(s) 123, 831, 865
AgsI TTSAA 1 cut(s) 622
AjnI CCWGG 2 cut(s) 37, 842
AluBI AGCT 9 cut(s) 6, 35, 105, 129, 218, 419, 802, 814, 901
AluI AGCT 9 cut(s) 6, 35, 105, 129, 218, 419, 802, 814, 901
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 2 cut(s) 186, 844
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 2 cut(s) 408, 829
ApeKI GCWGC 3 cut(s) 218, 419, 763
ApoI RAATTY 1 cut(s) 617
ArsI GACNNNNNNTTYG 4 cut(s) 317, 349, 690, 722
AseI ATTAAT 1 cut(s) 263
Asp700I GAANNNNTTC 2 cut(s) 617, 1080
AspLEI GCGC 3 cut(s) 495, 630, 858
AspS9I GGNCC 2 cut(s) 664, 846
AsuHPI GGTGA 5 cut(s) 562, 592, 727, 1003, 1145
AsuII TTCGAA 1 cut(s) 873
AvaII GGWCC 2 cut(s) 664, 846
AxyI CCTNAGG 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 816
BauI CACGAG 1 cut(s) 180
BbsI GAAGAC 2 cut(s) 438, 862
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 3 cut(s) 205, 406, 775
BccI CCATC 7 cut(s) 117, 532, 919, 931, 952, 961, 1130
BciT130I CCWGG 2 cut(s) 39, 844
BciVI GTATCC 1 cut(s) 1113
BclI TGATCA 1 cut(s) 597
BcoDI GTCTC 2 cut(s) 186, 844
BfmI CTRYAG 1 cut(s) 1051
BfoI RGCGCY 3 cut(s) 496, 631, 859
BfuAI ACCTGC 1 cut(s) 1044
BfuI GTATCC 1 cut(s) 1113
BisI GCNGC 5 cut(s) 219, 420, 631, 764, 829
BlpI GCTNAGC 1 cut(s) 1034
BlsI GCNGC 5 cut(s) 220, 421, 632, 765, 830
Bme1390I CCNGG 2 cut(s) 39, 844
Bme18I GGWCC 2 cut(s) 664, 846
BmgT120I GGNCC 2 cut(s) 664, 846
BmiI GGNNCC 2 cut(s) 494, 848
BmrFI CCNGG 2 cut(s) 39, 844
BmsI GCATC 2 cut(s) 150, 711
BpiI GAAGAC 2 cut(s) 438, 862
BpmI CTGGAG 3 cut(s) 21, 826, 836
Bpu1102I GCTNAGC 1 cut(s) 1034
Bpu14I TTCGAA 1 cut(s) 873
BsaHI GRCGYC 3 cut(s) 493, 717, 792
BsaJI CCNNGG 3 cut(s) 38, 826, 864
BsaXI ACNNNNNCTCC 4 cut(s) 666, 696, 938, 968
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 831, 865
Bse118I RCCGGY 3 cut(s) 661, 794, 882
Bse21I CCTNAGG 1 cut(s) 118
BseBI CCWGG 2 cut(s) 39, 844
BseDI CCNNGG 3 cut(s) 38, 826, 864
BseGI GGATG 3 cut(s) 128, 257, 524
BseLI CCNNNNNNNGG 3 cut(s) 123, 831, 865
BseMII CTCAG 1 cut(s) 1025
BseRI GAGGAG 3 cut(s) 554, 674, 959
BseSI GKGCMC 1 cut(s) 181
BseX3I CGGCCG 1 cut(s) 829
BseXI GCAGC 3 cut(s) 205, 406, 775
Bsh1236I CGCG 5 cut(s) 652, 714, 774, 810, 828
Bsh1285I CGRYCG 1 cut(s) 832
BshFI GGCC 2 cut(s) 410, 831
BshNI GGYRCC 1 cut(s) 492
BsiEI CGRYCG 1 cut(s) 832
BsiHKAI GWGCWC 1 cut(s) 816
BsiSI CCGG 4 cut(s) 662, 795, 832, 883
BslFI GGGAC 3 cut(s) 832, 989, 1100
BslI CCNNNNNNNGG 3 cut(s) 123, 831, 865
BsmAI GTCTC 2 cut(s) 186, 844
BsmFI GGGAC 3 cut(s) 832, 989, 1100
BsnI GGCC 2 cut(s) 410, 831
Bsp119I TTCGAA 1 cut(s) 873
Bsp1286I GDGCHC 2 cut(s) 181, 816
Bsp143I GATC 1 cut(s) 597
Bsp1720I GCTNAGC 1 cut(s) 1034
Bsp68I TCGCGA 1 cut(s) 714
BspACI CCGC 9 cut(s) 631, 650, 772, 781, 808, 826, 828, 1024, 1031
BspANI GGCC 2 cut(s) 410, 831
BspCNI CTCAG 1 cut(s) 1026
BspFNI CGCG 5 cut(s) 652, 714, 774, 810, 828
BspLI GGNNCC 2 cut(s) 494, 848
BspMAI CTGCAG 1 cut(s) 1055
BspMI ACCTGC 1 cut(s) 1044
BspT104I TTCGAA 1 cut(s) 873
BspT107I GGYRCC 1 cut(s) 492
BsrFI RCCGGY 3 cut(s) 661, 794, 882
BssAI RCCGGY 3 cut(s) 661, 794, 882
BssECI CCNNGG 3 cut(s) 38, 826, 864
BssMI GATC 1 cut(s) 597
BssNI GRCGYC 3 cut(s) 493, 717, 792
BssSI CACGAG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 864
Bst2BI CACGAG 1 cut(s) 180
Bst2UI CCWGG 2 cut(s) 39, 844
Bst4CI ACNGT 4 cut(s) 96, 323, 415, 454
Bst6I CTCTTC 4 cut(s) 158, 572, 936, 1136
BstACI GRCGYC 3 cut(s) 493, 717, 792
BstBI TTCGAA 1 cut(s) 873
BstC8I GCNNGC 7 cut(s) 103, 216, 357, 650, 796, 800, 812
BstDEI CTNAG 2 cut(s) 118, 1034
BstDSI CCRYGG 1 cut(s) 826
BstF5I GGATG 3 cut(s) 128, 257, 524
BstFNI CGCG 5 cut(s) 652, 714, 774, 810, 828
BstH2I RGCGCY 3 cut(s) 496, 631, 859
BstHHI GCGC 3 cut(s) 495, 630, 858
BstKTI GATC 1 cut(s) 600
BstMAI GTCTC 2 cut(s) 186, 844
BstMBI GATC 1 cut(s) 597
BstMCI CGRYCG 1 cut(s) 832
BstMWI GCNNNNNNNGC 9 cut(s) 73, 309, 365, 416, 658, 780, 816, 825, 1030
BstNI CCWGG 2 cut(s) 39, 844
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 2 cut(s) 37, 842
BstSFI CTRYAG 1 cut(s) 1051
BstSLI GKGCMC 1 cut(s) 181
BstUI CGCG 5 cut(s) 652, 714, 774, 810, 828
BstV1I GCAGC 3 cut(s) 205, 406, 775
BstV2I GAAGAC 2 cut(s) 438, 862
BstZI CGGCCG 1 cut(s) 829
Bsu36I CCTNAGG 1 cut(s) 118
BsuI GTATCC 1 cut(s) 1113
BsuRI GGCC 2 cut(s) 410, 831
BtgI CCRYGG 1 cut(s) 826
BtgZI GCGATG 1 cut(s) 980
BtsCI GGATG 3 cut(s) 128, 257, 524
BtsI GCAGTG 1 cut(s) 1048
BtsIMutI CAGTG 4 cut(s) 253, 328, 459, 1048
BtuMI TCGCGA 1 cut(s) 714
BveI ACCTGC 1 cut(s) 1044
Cac8I GCNNGC 7 cut(s) 103, 216, 357, 650, 796, 800, 812
CaiI CAGNNNCTG 1 cut(s) 419
CfoI GCGC 3 cut(s) 495, 630, 858
Cfr10I RCCGGY 3 cut(s) 661, 794, 882
Cfr13I GGNCC 2 cut(s) 664, 846
Cfr42I CCGCGG 1 cut(s) 829
CseI GACGC 3 cut(s) 725, 763, 800
Csp6I GTAC 1 cut(s) 880
CviAII CATG 2 cut(s) 55, 356
CviQI GTAC 1 cut(s) 880
DdeI CTNAG 2 cut(s) 118, 1034
DinI GGCGCC 1 cut(s) 494
DpnI GATC 1 cut(s) 599
DpnII GATC 1 cut(s) 597
EaeI YGGCCR 1 cut(s) 829
EagI CGGCCG 1 cut(s) 829
Eam1104I CTCTTC 4 cut(s) 158, 572, 936, 1136
EarI CTCTTC 4 cut(s) 158, 572, 936, 1136
EciI GGCGGA 1 cut(s) 770
Ecl136II GAGCTC 1 cut(s) 814
EclXI CGGCCG 1 cut(s) 829
Eco130I CCWWGG 1 cut(s) 864
Eco24I GRGCYC 1 cut(s) 816
Eco47I GGWCC 2 cut(s) 664, 846
Eco52I CGGCCG 1 cut(s) 829
Eco53kI GAGCTC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 1095
Eco81I CCTNAGG 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 814
EcoO109I RGGNCCY 1 cut(s) 846
EcoRII CCWGG 2 cut(s) 37, 842
EcoT14I CCWWGG 1 cut(s) 864
EcoT22I ATGCAT 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 816
EgeI GGCGCC 1 cut(s) 494
EheI GGCGCC 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 864
FaeI CATG 2 cut(s) 58, 359
FaiI YATR 4 cut(s) 56, 171, 309, 357
FaqI GGGAC 3 cut(s) 832, 989, 1100
FatI CATG 2 cut(s) 54, 355
FauI CCCGC 2 cut(s) 657, 833
FbaI TGATCA 1 cut(s) 597
Fnu4HI GCNGC 5 cut(s) 219, 420, 631, 764, 829
FokI GGATG 3 cut(s) 135, 264, 511
FriOI GRGCYC 1 cut(s) 816
Fsp4HI GCNGC 5 cut(s) 219, 420, 631, 764, 829
GlaI GCGC 3 cut(s) 494, 629, 857
GluI GCNGC 5 cut(s) 219, 420, 631, 764, 829
GsuI CTGGAG 3 cut(s) 21, 826, 836
HaeII RGCGCY 3 cut(s) 496, 631, 859
HaeIII GGCC 2 cut(s) 410, 831
HapII CCGG 4 cut(s) 662, 795, 832, 883
HgaI GACGC 3 cut(s) 725, 763, 800
HhaI GCGC 3 cut(s) 495, 630, 858
Hin1I GRCGYC 3 cut(s) 493, 717, 792
Hin1II CATG 2 cut(s) 58, 359
Hin6I GCGC 3 cut(s) 493, 628, 856
HinP1I GCGC 3 cut(s) 493, 628, 856
HincII GTYRAC 2 cut(s) 114, 985
HindII GTYRAC 2 cut(s) 114, 985
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 6 cut(s) 505, 729, 912, 981, 1027, 1069
HpaII CCGG 4 cut(s) 662, 795, 832, 883
HphI GGTGA 5 cut(s) 562, 592, 727, 1003, 1145
Hpy166II GTNNAC 2 cut(s) 114, 985
Hpy188I TCNGA 2 cut(s) 504, 728
Hpy8I GTNNAC 2 cut(s) 114, 985
Hpy99I CGWCG 4 cut(s) 719, 791, 794, 893
HpyAV CCTTC 5 cut(s) 400, 506, 601, 923, 965
HpyCH4III ACNGT 4 cut(s) 96, 323, 415, 454
HpyCH4IV ACGT 1 cut(s) 878
HpyCH4V TGCA 6 cut(s) 76, 101, 141, 214, 368, 1053
HpyF10VI GCNNNNNNNGC 9 cut(s) 73, 309, 365, 416, 658, 780, 816, 825, 1030
HpyF3I CTNAG 2 cut(s) 118, 1034
HpySE526I ACGT 1 cut(s) 878
Hsp92I GRCGYC 3 cut(s) 493, 717, 792
Hsp92II CATG 2 cut(s) 58, 359
HspAI GCGC 3 cut(s) 493, 628, 856
KasI GGCGCC 1 cut(s) 492
KroI GCCGGC 1 cut(s) 794
KroNI GCCGGC 1 cut(s) 796
Ksp22I TGATCA 1 cut(s) 597
KspI CCGCGG 1 cut(s) 829
Kzo9I GATC 1 cut(s) 597
LmnI GCTCC 3 cut(s) 40, 126, 807
Lsp1109I GCAGC 3 cut(s) 205, 406, 775
LweI GCATC 2 cut(s) 150, 711
MaeII ACGT 1 cut(s) 878
MaeIII GTNAC 4 cut(s) 256, 323, 706, 999
MalI GATC 1 cut(s) 599
MboI GATC 1 cut(s) 597
MhlI GDGCHC 2 cut(s) 181, 816
MluCI AATT 2 cut(s) 172, 617
Mly113I GGCGCC 1 cut(s) 493
MlyI GAGTC 2 cut(s) 499, 990
MmeI TCCRAC 1 cut(s) 371
Mph1103I ATGCAT 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 794
MroXI GAANNNNTTC 2 cut(s) 617, 1080
MseI TTAA 2 cut(s) 23, 263
MspA1I CMGCKG 2 cut(s) 828, 1033
MspI CCGG 4 cut(s) 662, 795, 832, 883
MspR9I CCNGG 2 cut(s) 39, 844
MvaI CCWGG 2 cut(s) 39, 844
MvnI CGCG 5 cut(s) 652, 714, 774, 810, 828
MwoI GCNNNNNNNGC 9 cut(s) 73, 309, 365, 416, 658, 780, 816, 825, 1030
NaeI GCCGGC 1 cut(s) 796
NarI GGCGCC 1 cut(s) 493
NdeII GATC 1 cut(s) 597
NgoMIV GCCGGC 1 cut(s) 794
NlaIII CATG 2 cut(s) 58, 359
NlaIV GGNNCC 2 cut(s) 494, 848
NmeAIII GCCGAG 1 cut(s) 795
NmuCI GTSAC 2 cut(s) 323, 706
NruI TCGCGA 1 cut(s) 714
NsiI ATGCAT 1 cut(s) 143
NspI RCATGY 1 cut(s) 359
NspV TTCGAA 1 cut(s) 873
PaeI GCATGC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 2 cut(s) 702, 711
PdiI GCCGGC 1 cut(s) 796
PdmI GAANNNNTTC 2 cut(s) 617, 1080
PfeI GAWTC 4 cut(s) 729, 912, 1027, 1069
PflFI GACNNNGTC 1 cut(s) 980
PflMI CCANNNNNTGG 1 cut(s) 865
PkrI GCNGC 5 cut(s) 220, 421, 632, 765, 830
PleI GAGTC 2 cut(s) 499, 989
PluTI GGCGCC 1 cut(s) 496
PpsI GAGTC 2 cut(s) 499, 989
PpuMI RGGWCCY 1 cut(s) 846
PshBI ATTAAT 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 816
Psp5II RGGWCCY 1 cut(s) 846
Psp6I CCWGG 2 cut(s) 37, 842
PspGI CCWGG 2 cut(s) 37, 842
PspN4I GGNNCC 2 cut(s) 494, 848
PspPI GGNCC 2 cut(s) 664, 846
PspPPI RGGWCCY 1 cut(s) 846
PstI CTGCAG 1 cut(s) 1055
PstNI CAGNNNCTG 1 cut(s) 419
PsyI GACNNNGTC 1 cut(s) 980
RruI TCGCGA 1 cut(s) 714
RsaI GTAC 1 cut(s) 881
RsaNI GTAC 1 cut(s) 880
SacI GAGCTC 1 cut(s) 816
SacII CCGCGG 1 cut(s) 829
SaqAI TTAA 2 cut(s) 23, 263
SatI GCNGC 5 cut(s) 219, 420, 631, 764, 829
Sau3AI GATC 1 cut(s) 597
Sau96I GGNCC 2 cut(s) 664, 846
SchI GAGTC 2 cut(s) 499, 990
ScrFI CCNGG 2 cut(s) 39, 844
SduI GDGCHC 2 cut(s) 181, 816
SfaNI GCATC 2 cut(s) 150, 711
SfcI CTRYAG 1 cut(s) 1051
SfoI GGCGCC 1 cut(s) 494
Sfr303I CCGCGG 1 cut(s) 829
SfuI TTCGAA 1 cut(s) 873
SgrBI CCGCGG 1 cut(s) 829
SinI GGWCC 2 cut(s) 664, 846
SphI GCATGC 1 cut(s) 359
Sse9I AATT 2 cut(s) 172, 617
SsiI CCGC 9 cut(s) 631, 650, 772, 781, 808, 826, 828, 1024, 1031
SspDI GGCGCC 1 cut(s) 492
SstI GAGCTC 1 cut(s) 816
StyD4I CCNGG 2 cut(s) 37, 842
StyI CCWWGG 1 cut(s) 864
TaaI ACNGT 4 cut(s) 96, 323, 415, 454
TaiI ACGT 1 cut(s) 881
TaqI TCGA 5 cut(s) 269, 696, 758, 786, 873
TasI AATT 2 cut(s) 172, 617
TauI GCSGC 2 cut(s) 633, 831
TfiI GAWTC 4 cut(s) 729, 912, 1027, 1069
Tru1I TTAA 2 cut(s) 23, 263
Tru9I TTAA 2 cut(s) 23, 263
TscAI CASTG 4 cut(s) 253, 328, 459, 1055
TseFI GTSAC 2 cut(s) 323, 706
TseI GCWGC 3 cut(s) 218, 419, 763
Tsp45I GTSAC 2 cut(s) 323, 706
TspDTI ATGAA 2 cut(s) 73, 176
TspGWI ACGGA 2 cut(s) 161, 932
TspRI CASTG 4 cut(s) 253, 328, 459, 1055
Tth111I GACNNNGTC 1 cut(s) 980
Van91I CCANNNNNTGG 1 cut(s) 865
VpaK11BI GGWCC 2 cut(s) 664, 846
VspI ATTAAT 1 cut(s) 263
XapI RAATTY 1 cut(s) 617
XceI RCATGY 1 cut(s) 359
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XmnI GAANNNNTTC 2 cut(s) 617, 1080
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.