Rorug07G0322500

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016156
Physical Location & Seq
Forward (+)
33197927 .. 33199432
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0322500.1

Sequence Viewer

Length: 906 bp
ATGAGTCGATCACCAAAAACCTATCCAAGTTTCAACTATAAGCTTCTTCTCCTCGGAGTTTTCCTGGCTTTCGTTGTCCTCTTTGTCTTGAGATCAAGCTTCTCATCATCTGATTCCAATCAAAATCCATCTACCATCTCGCCAAAGGTACCTTTACTCAATGCTTCGGCTAAAGATTTAAGTAGCACTTCTACATACTGCTCACCAAGTACTACTGGTTGCAACAAGATCCCATCCTCTCTAGCTCAAACCATAATCCACTACACAACCTCAACCATCACCCCACAACAAACCCTCAAGGAAATCTCAGTGACAGCAAAGATTCTAGACCAGAAATCACCATGCAACTTCCTTGTCTTTGGCCTTGGCCACGACAGCCTTATGTGGAGTGCACTCAACCATGGGGGTAGGACAATTTTCCTGGAAGAAGACGAGTCCTGGATCGAGCAAATCCGACGCCGCTTCCCCACATTGGAATCATACCATGTCACATATAACAGCAAGGTGAATGAGGCTGATAATCTCATGGATGTTGGGAAGGGGCCTGAGTGCACTGCAGTTGGTAGTGATATTAAGTACAGCATGTGCCAATTAGCTTTGAAGGGTCTACCGAGTGAGGTTTATGACATCAAATGGGATTTGATAATGGTGGATGCACCCACCGGGTATCATGATGAAGCACCGGGAAGAATGAGTGCCATATACACAGCTGGAATGATAGCCCGAAATAAAGAGGAAGGGGAGACTACTCATGTGTTTGTTCATGATGTGAACAGAGTTGTGGAAGACAAGTTCTCTATGTCATTCCTTTGTAAAGGTTACATTCAAAAACAGGAAGGGAGGTTGAGGCACTTCACTATTCCTAGTCACAGGGATGGTTCCAGCAGGCCATTTTGCCCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

301

Amino Acids

33.59

Weight (kDa)

6.75

Isoelectric Point (pI)

55.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 100 - 285 9e-80 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G08940
fragaria_vesca FvH4_2g09730 FvH4_2g09730
malus_domestica MD00G1009900.v1.1
prunus_persica Prupe.1G518700_v2.0.a1
pyrus_communis pycom08g15830 pycom15g33270
rosa_chinensis RchiOBHm_Chr7g0238641
rosa_laevigata RLG00000000822
rosa_multiflora Rmu_sc0000023.1_g000009 Rmu_sc0030975.1_g000001
rosa_roxburghii Rroxscaffold_3G00221660
rosa_rugosa Rorug07G0322500
rosa_samantha Rh7BG448100
rosa_wichuraiana Rw7G039810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 607
AciI CCGC 1 cut(s) 460
AclWI GGATC 2 cut(s) 223, 449
AcoI YGGCCR 1 cut(s) 367
AcyI GRCGYC 1 cut(s) 457
AfaI GTAC 3 cut(s) 150, 211, 578
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 3 cut(s) 34, 601, 827
AjnI CCWGG 3 cut(s) 63, 420, 437
AloI GAACNNNNNNTCC 2 cut(s) 776, 808
AluBI AGCT 5 cut(s) 43, 99, 245, 596, 710
AluI AGCT 5 cut(s) 43, 99, 245, 596, 710
Alw21I GWGCWC 2 cut(s) 394, 554
Alw26I GTCTC 1 cut(s) 737
Alw44I GTGCAC 2 cut(s) 390, 550
AlwI GGATC 2 cut(s) 223, 449
AoxI GGCC 4 cut(s) 361, 367, 542, 887
ApaLI GTGCAC 2 cut(s) 390, 550
Asp718I GGTACC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 542
AsuC2I CCSGG 2 cut(s) 664, 684
AsuHPI GGTGA 5 cut(s) 3, 195, 271, 330, 517
BaeGI GKGCMC 2 cut(s) 394, 554
BalI TGGCCA 1 cut(s) 369
BanI GGYRCC 1 cut(s) 148
BbsI GAAGAC 2 cut(s) 435, 792
Bbv12I GWGCWC 2 cut(s) 394, 554
BccI CCATC 5 cut(s) 136, 143, 241, 284, 869
BciT130I CCWGG 3 cut(s) 65, 422, 439
BcnI CCSGG 2 cut(s) 664, 684
BcoDI GTCTC 1 cut(s) 737
BfaI CTAG 3 cut(s) 242, 326, 864
BfmI CTRYAG 1 cut(s) 555
BisI GCNGC 1 cut(s) 460
BlsI GCNGC 1 cut(s) 461
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 5 cut(s) 65, 422, 439, 664, 684
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 3 cut(s) 150, 543, 880
BmrFI CCNGG 5 cut(s) 65, 422, 439, 664, 684
BmsI GCATC 1 cut(s) 643
BpiI GAAGAC 2 cut(s) 435, 792
BpuEI CTTGAG 2 cut(s) 109, 281
BpuMI CCSGG 2 cut(s) 664, 684
BsaBI GATNNNNATC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 52, 364, 400
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse1I ACTGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 3 cut(s) 65, 422, 439
BseDI CCNNGG 3 cut(s) 52, 364, 400
BseGI GGATG 4 cut(s) 233, 535, 658, 880
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMII CTCAG 2 cut(s) 321, 537
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 394, 554
BshFI GGCC 4 cut(s) 363, 369, 544, 889
BshNI GGYRCC 1 cut(s) 148
BsiHKAI GWGCWC 2 cut(s) 394, 554
BsiSI CCGG 2 cut(s) 663, 683
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 1 cut(s) 737
BsnI GGCC 4 cut(s) 363, 369, 544, 889
Bsp1286I GDGCHC 2 cut(s) 394, 554
Bsp143I GATC 4 cut(s) 8, 92, 228, 441
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 1 cut(s) 460
BspANI GGCC 4 cut(s) 363, 369, 544, 889
BspCNI CTCAG 2 cut(s) 320, 538
BspHI TCATGA 2 cut(s) 670, 763
BspLI GGNNCC 3 cut(s) 150, 543, 880
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 2 cut(s) 223, 449
BspT107I GGYRCC 1 cut(s) 148
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 52, 364, 400
BssMI GATC 4 cut(s) 8, 92, 228, 441
BssNI GRCGYC 1 cut(s) 457
BssT1I CCWWGG 2 cut(s) 364, 400
Bst2UI CCWGG 3 cut(s) 65, 422, 439
BstACI GRCGYC 1 cut(s) 457
BstC8I GCNNGC 1 cut(s) 887
BstDEI CTNAG 2 cut(s) 307, 546
BstDSI CCRYGG 1 cut(s) 400
BstF5I GGATG 4 cut(s) 233, 535, 658, 880
BstKTI GATC 4 cut(s) 11, 95, 231, 444
BstMAI GTCTC 1 cut(s) 737
BstMBI GATC 4 cut(s) 8, 92, 228, 441
BstMWI GCNNNNNNNGC 1 cut(s) 375
BstNI CCWGG 3 cut(s) 65, 422, 439
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 5 cut(s) 63, 420, 437, 662, 682
BstSFI CTRYAG 1 cut(s) 555
BstSLI GKGCMC 2 cut(s) 394, 554
BstV2I GAAGAC 2 cut(s) 435, 792
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 4 cut(s) 363, 369, 544, 889
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 4 cut(s) 233, 535, 658, 880
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 2 cut(s) 315, 552
Cac8I GCNNGC 1 cut(s) 887
CciI TCATGA 2 cut(s) 670, 763
Cfr13I GGNCC 1 cut(s) 542
CseI GACGC 1 cut(s) 465
Csp6I GTAC 3 cut(s) 149, 210, 577
CviAII CATG 8 cut(s) 342, 401, 485, 526, 583, 671, 752, 764
CviQI GTAC 3 cut(s) 149, 210, 577
DdeI CTNAG 2 cut(s) 307, 546
DpnI GATC 4 cut(s) 10, 94, 230, 443
DpnII GATC 4 cut(s) 8, 92, 228, 441
EaeI YGGCCR 1 cut(s) 367
Eco130I CCWWGG 2 cut(s) 364, 400
EcoO109I RGGNCCY 1 cut(s) 542
EcoRII CCWGG 3 cut(s) 63, 420, 437
EcoT14I CCWWGG 2 cut(s) 364, 400
ErhI CCWWGG 2 cut(s) 364, 400
FaeI CATG 8 cut(s) 345, 404, 488, 529, 586, 674, 755, 767
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FatI CATG 8 cut(s) 341, 400, 484, 525, 582, 670, 751, 763
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 1 cut(s) 460
FokI GGATG 4 cut(s) 220, 542, 665, 887
Fsp4HI GCNGC 1 cut(s) 460
FspBI CTAG 3 cut(s) 242, 326, 864
GluI GCNGC 1 cut(s) 460
HaeIII GGCC 4 cut(s) 363, 369, 544, 889
HapII CCGG 2 cut(s) 663, 683
HgaI GACGC 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 457
Hin1II CATG 8 cut(s) 345, 404, 488, 529, 586, 674, 755, 767
HindIII AAGCTT 2 cut(s) 41, 97
HinfI GANTC 5 cut(s) 4, 113, 322, 434, 476
HpaII CCGG 2 cut(s) 663, 683
HphI GGTGA 5 cut(s) 3, 195, 271, 330, 517
Hpy166II GTNNAC 4 cut(s) 392, 552, 608, 772
Hpy188I TCNGA 3 cut(s) 56, 112, 455
Hpy188III TCNNGA 4 cut(s) 88, 326, 671, 764
Hpy8I GTNNAC 4 cut(s) 392, 552, 608, 772
Hpy99I CGWCG 1 cut(s) 459
HpyAV CCTTC 4 cut(s) 532, 595, 731, 830
HpyCH4V TGCA 6 cut(s) 222, 345, 392, 552, 557, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 375
HpyF3I CTNAG 2 cut(s) 307, 546
Hsp92I GRCGYC 1 cut(s) 457
Hsp92II CATG 8 cut(s) 345, 404, 488, 529, 586, 674, 755, 767
KpnI GGTACC 1 cut(s) 152
Kzo9I GATC 4 cut(s) 8, 92, 228, 441
LweI GCATC 1 cut(s) 643
MaeI CTAG 3 cut(s) 242, 326, 864
MaeIII GTNAC 4 cut(s) 310, 487, 818, 866
MalI GATC 4 cut(s) 10, 94, 230, 443
MboI GATC 4 cut(s) 8, 92, 228, 441
MboII GAAGA 5 cut(s) 38, 437, 440, 699, 797
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 2 cut(s) 394, 554
MlsI TGGCCA 1 cut(s) 369
MluCI AATT 2 cut(s) 414, 590
MluNI TGGCCA 1 cut(s) 369
MlyI GAGTC 2 cut(s) 13, 443
MmeI TCCRAC 1 cut(s) 478
Mox20I TGGCCA 1 cut(s) 369
MscI TGGCCA 1 cut(s) 369
MseI TTAA 2 cut(s) 179, 573
MslI CAYNNNNRTG 1 cut(s) 873
Msp20I TGGCCA 1 cut(s) 369
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 2 cut(s) 663, 683
MspR9I CCNGG 5 cut(s) 65, 422, 439, 664, 684
MvaI CCWGG 3 cut(s) 65, 422, 439
MwoI GCNNNNNNNGC 1 cut(s) 375
NciI CCSGG 2 cut(s) 664, 684
NcoI CCATGG 1 cut(s) 400
NdeII GATC 4 cut(s) 8, 92, 228, 441
NlaIII CATG 8 cut(s) 345, 404, 488, 529, 586, 674, 755, 767
NlaIV GGNNCC 3 cut(s) 150, 543, 880
NmuCI GTSAC 3 cut(s) 310, 487, 866
NspI RCATGY 1 cut(s) 586
PagI TCATGA 2 cut(s) 670, 763
PfeI GAWTC 3 cut(s) 113, 322, 476
PfoI TCCNGGA 2 cut(s) 420, 437
PkrI GCNGC 1 cut(s) 461
PleI GAGTC 2 cut(s) 12, 442
PpsI GAGTC 2 cut(s) 12, 442
Psp6I CCWGG 3 cut(s) 63, 420, 437
PspGI CCWGG 3 cut(s) 63, 420, 437
PspN4I GGNNCC 3 cut(s) 150, 543, 880
PspPI GGNCC 1 cut(s) 542
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 3 cut(s) 150, 211, 578
RsaNI GTAC 3 cut(s) 149, 210, 577
RseI CAYNNNNRTG 1 cut(s) 873
SaqAI TTAA 2 cut(s) 179, 573
SatI GCNGC 1 cut(s) 460
Sau3AI GATC 4 cut(s) 8, 92, 228, 441
Sau96I GGNCC 1 cut(s) 542
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 2 cut(s) 13, 443
ScrFI CCNGG 5 cut(s) 65, 422, 439, 664, 684
SduI GDGCHC 2 cut(s) 394, 554
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 2 cut(s) 88, 296
SmoI CTYRAG 2 cut(s) 88, 296
Sse9I AATT 2 cut(s) 414, 590
SsiI CCGC 1 cut(s) 460
SspMI CTAG 3 cut(s) 242, 326, 864
StyD4I CCNGG 5 cut(s) 63, 420, 437, 662, 682
StyI CCWWGG 2 cut(s) 364, 400
TaqI TCGA 2 cut(s) 7, 444
TasI AATT 2 cut(s) 414, 590
TatI WGTACW 2 cut(s) 209, 576
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 3 cut(s) 113, 322, 476
Tru1I TTAA 2 cut(s) 179, 573
Tru9I TTAA 2 cut(s) 179, 573
TscAI CASTG 2 cut(s) 315, 559
TseFI GTSAC 3 cut(s) 310, 487, 866
Tsp45I GTSAC 3 cut(s) 310, 487, 866
TspDTI ATGAA 2 cut(s) 690, 752
TspRI CASTG 2 cut(s) 315, 559
VneI GTGCAC 2 cut(s) 390, 550
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 1 cut(s) 586
XmiI GTMKAC 1 cut(s) 607
XspI CTAG 3 cut(s) 242, 326, 864
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.