Prupe.1G533500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017918
Physical Location & Seq
Reverse (-)
43608455 .. 43609011
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G533500.1

Sequence Viewer

Length: 360 bp
ATGGCGTCAATGGTGTCAAAATCAAACAAAATGAACAAGCATATTTGTCTCTACGCCCTACTAGGACTGTTTGCAGGTGTTATTTTCAGCTCTTGCTTGCATGGGTCTCAAATGAATTTGGAGGAGCAACTTAATAGAGCCCCTCTTACAGAGAGTTATGTTCAATTACAAGGCACCGTGGCTAGAAGGATACAAGATGGCTCGATCACTCTGACAGTTAAATTCCTCCATTTCTTCATTGCAAGGTTTCTACAGTTCCGACATTTATCCCCGGTGCAGCCACCACCTTATTCTACATCGATGCTATTCTGGGTAGCAGTTACTCAATCAGTTTCTTCCACGTCCGACCTCTCGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.31

Weight (kDa)

9.44

Isoelectric Point (pI)

65.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017918)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58225 AT1G58225
fragaria_vesca FvH4_5g35200
prunus_persica Prupe.1G533500_v2.0.a1
pyrus_communis pycom15g34730
rosa_roxburghii Rroxscaffold_3G00225240 Rroxscaffold_3G00225250
rosa_rugosa Rorug07G0295400 Rorug07G0295400
rosa_samantha Rh7DG439700
rosa_wichuraiana Rw7G037460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 65
Acc36I ACCTGC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 173
AcsI RAATTY 2 cut(s) 115, 221
AcyI GRCGYC 1 cut(s) 5
AgsI TTSAA 1 cut(s) 164
AjiI CACGTC 1 cut(s) 342
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 53, 111
ApeKI GCWGC 1 cut(s) 277
ApoI RAATTY 2 cut(s) 115, 221
AsuC2I CCSGG 1 cut(s) 272
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 191
BciVI GTATCC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 53, 111
BfaI CTAG 2 cut(s) 62, 183
BfmI CTRYAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 65
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 1 cut(s) 278
BlsI GCNGC 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 342
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 272
Bsa29I ATCGAT 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 177, 270
Bse3DI GCAATG 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 177, 270
BseMI GCAATG 1 cut(s) 237
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 173
BshVI ATCGAT 1 cut(s) 299
BsiSI CCGG 1 cut(s) 272
BsmAI GTCTC 2 cut(s) 53, 111
Bso31I GGTCTC 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 177, 270
BssMI GATC 1 cut(s) 204
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 4 cut(s) 69, 178, 217, 255
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 98
BstDSI CCRYGG 1 cut(s) 177
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 2 cut(s) 53, 111
BstMBI GATC 1 cut(s) 204
BstSCI CCNGG 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 1 cut(s) 289
Bsu15I ATCGAT 1 cut(s) 299
BsuI GTATCC 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 177
BtrI CACGTC 1 cut(s) 342
BveI ACCTGC 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 299
CviAII CATG 1 cut(s) 101
CviJI RGCY 5 cut(s) 90, 140, 182, 201, 280
CviKI_1 RGCY 5 cut(s) 90, 140, 182, 201, 280
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 142
Eco31I GGTCTC 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 1 cut(s) 104
FaiI YATR 3 cut(s) 42, 102, 159
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 278
FspBI CTAG 2 cut(s) 62, 183
GluI GCNGC 1 cut(s) 278
HapII CCGG 1 cut(s) 272
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 104
HpaII CCGG 1 cut(s) 272
Hpy188I TCNGA 3 cut(s) 213, 260, 346
HpyAV CCTTC 1 cut(s) 180
HpyCH4III ACNGT 4 cut(s) 69, 178, 217, 255
HpyCH4IV ACGT 1 cut(s) 341
HpyCH4V TGCA 4 cut(s) 74, 100, 242, 277
HpySE526I ACGT 1 cut(s) 341
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 204
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 60, 285, 295
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 291
MaeI CTAG 2 cut(s) 62, 183
MaeII ACGT 1 cut(s) 341
MaeIII GTNAC 1 cut(s) 319
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 2 cut(s) 226, 327
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 3 cut(s) 115, 164, 221
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 4 cut(s) 115, 153, 236, 359
MseI TTAA 2 cut(s) 132, 219
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 272
NciI CCSGG 1 cut(s) 272
NdeII GATC 1 cut(s) 204
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 132, 219
SatI GCNGC 1 cut(s) 278
Sau3AI GATC 1 cut(s) 204
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 142
SetI ASST 6 cut(s) 79, 92, 248, 289, 344, 351
SfaNI GCATC 1 cut(s) 291
SfcI CTRYAG 1 cut(s) 251
Sse9I AATT 3 cut(s) 115, 164, 221
SspMI CTAG 2 cut(s) 62, 183
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 4 cut(s) 69, 178, 217, 255
TaiI ACGT 1 cut(s) 344
TaqI TCGA 2 cut(s) 203, 299
TasI AATT 3 cut(s) 115, 164, 221
Tru1I TTAA 2 cut(s) 132, 219
Tru9I TTAA 2 cut(s) 132, 219
TseI GCWGC 1 cut(s) 277
TspDTI ATGAA 3 cut(s) 47, 128, 226
XapI RAATTY 2 cut(s) 115, 221
XspI CTAG 2 cut(s) 62, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.