pycom15g34730

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
34521340 .. 34521674
335 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g34730.1

Sequence Viewer

Length: 273 bp
ATGAACAAGGCTATTTATCTTCATGCCCTGTTAGGGCTGTTTGCAGGTGTTATTCTCAGCTCCTGCTTTCATGGGATTCCAATGAATTTGGAGGAACAACTTAACAGCGACAGTCTTGCACAAGGTTTTGCTGAAACACGTGTTTGTTACCAACTAATTCTTAGTCCAGTAATACATCTGTTCTCATCGTTGAAAGAGTTTCGAAATAGTAATACTATATCCTCCCCCCGTTGCGCTTTAGCAAAAACGTTTATTGTTGGTTTCACTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.92

Weight (kDa)

7.77

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017918)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58225 AT1G58225
fragaria_vesca FvH4_5g35200
prunus_persica Prupe.1G533500_v2.0.a1
pyrus_communis pycom15g34730
rosa_roxburghii Rroxscaffold_3G00225240 Rroxscaffold_3G00225250
rosa_rugosa Rorug07G0295400 Rorug07G0295400
rosa_samantha Rh7DG439700
rosa_wichuraiana Rw7G037460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 35
AclI AACGTT 1 cut(s) 248
AcsI RAATTY 1 cut(s) 85
AcvI CACGTG 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 33
AflIII ACRYGT 2 cut(s) 137, 139
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 63
ApoI RAATTY 1 cut(s) 85
AspLEI GCGC 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 202
BbrPI CACGTG 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BfuAI ACCTGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 69
BspMI ACCTGC 1 cut(s) 35
BspT104I TTCGAA 1 cut(s) 202
BsrI ACTGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 56, 161
BstHHI GCGC 1 cut(s) 236
BveI ACCTGC 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 63
CfoI GCGC 1 cut(s) 236
CviAII CATG 2 cut(s) 23, 71
CviJI RGCY 3 cut(s) 11, 37, 60
CviKI_1 RGCY 3 cut(s) 11, 37, 60
DdeI CTNAG 2 cut(s) 56, 161
Eco72I CACGTG 1 cut(s) 140
FaeI CATG 2 cut(s) 26, 74
FaiI YATR 3 cut(s) 24, 72, 218
FatI CATG 2 cut(s) 22, 70
GlaI GCGC 1 cut(s) 235
HhaI GCGC 1 cut(s) 236
Hin1II CATG 2 cut(s) 26, 74
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 139, 248
HpyCH4V TGCA 2 cut(s) 44, 119
HpyF3I CTNAG 2 cut(s) 56, 161
HpySE526I ACGT 2 cut(s) 139, 248
Hsp92II CATG 2 cut(s) 26, 74
HspAI GCGC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 4 cut(s) 30, 41, 76, 180
MaeII ACGT 2 cut(s) 139, 248
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 1 cut(s) 11
MluCI AATT 2 cut(s) 85, 156
MnlI CCTC 2 cut(s) 85, 232
MseI TTAA 1 cut(s) 102
NlaIII CATG 2 cut(s) 26, 74
NspV TTCGAA 1 cut(s) 202
PaqCI CACCTGC 1 cut(s) 35
PfeI GAWTC 1 cut(s) 76
PmaCI CACGTG 1 cut(s) 140
PmlI CACGTG 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 140
Psp1406I AACGTT 1 cut(s) 248
PspCI CACGTG 1 cut(s) 140
PstNI CAGNNNCTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 102
SetI ASST 5 cut(s) 49, 62, 127, 142, 251
SfuI TTCGAA 1 cut(s) 202
Sse9I AATT 2 cut(s) 85, 156
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 2 cut(s) 142, 251
TaqI TCGA 1 cut(s) 202
TasI AATT 2 cut(s) 85, 156
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TspDTI ATGAA 4 cut(s) 11, 17, 59, 98
XapI RAATTY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.