Prupe.1G568400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010890
Physical Location & Seq
Forward (+)
46347761 .. 46349200
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G568400.1

Sequence Viewer

Length: 525 bp
ATGGAAGATCTAATCGCCCAATTCAGCTTCCTCTCAAACCAAGCCTTGCAAGACAAAAGCTTCGACCCCGCCACGATCGAAGACCTGATGAAACTCTTCGAGATCGAAGCGTACAAATCATGGGCTGCAGTTGAACTGGAACAGCAGCAAGAAGTGGAAGCAGCTGAGGTTGCCATGCAGGAAGCTGAGGACTACATGGACTCAGTGATGGAGAGTGCCATGGATGAGTTCAGACGTTTTGAAGCGGAAATGGAAGCCATCTCCAAGGCTGAGCTCGACAGCTTAGTTGCCACTGCAGAAAGTGCAAGGAAGATGGGGAAGTTCATGGAGAATGCAGCCACTATTGCTTCCAAGAGGTATATTGAGGCTGCTCTCAACTCAGCCACTGCTTCCATGAAATCAGCTTGGAAGGGGATTTCTACTAGCAAGGAAGCAACCGCAGAGAGTGCAAGGAAGGAGGGCAGTCTTTTGTTTGTGGTACCTTTTTTATTATTTGGAGAAAAAGAGAAAAGGCAGGGTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.35

Weight (kDa)

4.5

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010890)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60870
fragaria_vesca FvH4_5g29530 FvH4_5g29530
malus_domestica MD08G1229100.v1.1 MD15G1423100.v1.1
prunus_persica Prupe.1G568400_v2.0.a1
pyrus_communis pycom15g37490 pycom15g37510
rosa_chinensis RchiOBHm_Chr7g0222451
rosa_laevigata RLG00000002058
rosa_multiflora Rmu_sc0004638.1_g000013 Rmu_sc0035136.1_g000001
rosa_roxburghii Rroxscaffold_3G00236960
rosa_rugosa Rorug07G0208800
rosa_samantha Rh7AG350900 Rh7BG341800 Rh7CG368200 Rh7DG347800
rosa_wichuraiana Rw7G029640 Rw7G029980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 478
AccB1I GGYRCC 1 cut(s) 478
AciI CCGC 3 cut(s) 69, 245, 438
AfaI GTAC 2 cut(s) 113, 480
AgsI TTSAA 2 cut(s) 134, 242
AluBI AGCT 7 cut(s) 27, 60, 164, 185, 274, 282, 404
AluI AGCT 7 cut(s) 27, 60, 164, 185, 274, 282, 404
Alw21I GWGCWC 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 386
ApeKI GCWGC 5 cut(s) 125, 145, 161, 335, 368
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 1 cut(s) 95
Asp718I GGTACC 1 cut(s) 478
BanI GGYRCC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 276
BbvCI CCTCAGC 2 cut(s) 165, 186
BbvI GCAGC 5 cut(s) 112, 157, 173, 347, 355
BccI CCATC 3 cut(s) 202, 266, 307
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 2 cut(s) 126, 294
BglII AGATCT 1 cut(s) 7
BisI GCNGC 5 cut(s) 126, 146, 162, 336, 369
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 5 cut(s) 127, 147, 163, 337, 370
BmiI GGNNCC 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 2 cut(s) 165, 186
Bpu1102I GCTNAGC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 219, 264
Bse1I ACTGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 219, 264
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 5 cut(s) 156, 177, 216, 261, 393
BseNI ACTGG 1 cut(s) 141
BseXI GCAGC 5 cut(s) 112, 157, 173, 347, 355
Bsh1285I CGRYCG 1 cut(s) 78
BshNI GGYRCC 1 cut(s) 478
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 276
BsmI GAATGC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 7, 75, 102
Bsp1720I GCTNAGC 1 cut(s) 270
Bsp19I CCATGG 1 cut(s) 219
BspACI CCGC 3 cut(s) 69, 245, 438
BspCNI CTCAG 5 cut(s) 157, 178, 215, 262, 392
BspLI GGNNCC 1 cut(s) 480
BspMAI CTGCAG 2 cut(s) 130, 298
BspT107I GGYRCC 1 cut(s) 478
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 219, 264
BssMI GATC 3 cut(s) 7, 75, 102
BssT1I CCWWGG 2 cut(s) 219, 264
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 2 cut(s) 302, 446
BstDEI CTNAG 6 cut(s) 165, 186, 202, 270, 283, 379
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 3 cut(s) 10, 78, 105
BstMBI GATC 3 cut(s) 7, 75, 102
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 4 cut(s) 170, 302, 344, 446
BstSFI CTRYAG 2 cut(s) 126, 294
BstV1I GCAGC 5 cut(s) 112, 157, 173, 347, 355
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 229
BtsI GCAGTG 2 cut(s) 291, 384
BtsIMutI CAGTG 3 cut(s) 210, 291, 384
CaiI CAGNNNCTG 1 cut(s) 386
Csp6I GTAC 2 cut(s) 112, 479
CviAII CATG 6 cut(s) 120, 175, 196, 220, 325, 394
CviQI GTAC 2 cut(s) 112, 479
DdeI CTNAG 6 cut(s) 165, 186, 202, 270, 283, 379
DpnI GATC 3 cut(s) 9, 77, 104
DpnII GATC 3 cut(s) 7, 75, 102
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 219, 264
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoT14I CCWWGG 2 cut(s) 219, 264
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 219, 264
FaeI CATG 6 cut(s) 123, 178, 199, 223, 328, 397
FaiI YATR 7 cut(s) 121, 176, 197, 221, 326, 360, 395
FatI CATG 6 cut(s) 119, 174, 195, 219, 324, 393
FauI CCCGC 1 cut(s) 76
Fnu4HI GCNGC 5 cut(s) 126, 146, 162, 336, 369
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 5 cut(s) 126, 146, 162, 336, 369
FspBI CTAG 1 cut(s) 423
GluI GCNGC 5 cut(s) 126, 146, 162, 336, 369
Hin1II CATG 6 cut(s) 123, 178, 199, 223, 328, 397
HindIII AAGCTT 1 cut(s) 58
HinfI GANTC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 403, 448
HpyCH4IV ACGT 1 cut(s) 235
HpyCH4V TGCA 7 cut(s) 49, 128, 178, 296, 305, 335, 449
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 302, 344, 446
HpyF3I CTNAG 6 cut(s) 165, 186, 202, 270, 283, 379
HpySE526I ACGT 1 cut(s) 235
Hsp92II CATG 6 cut(s) 123, 178, 199, 223, 328, 397
KpnI GGTACC 1 cut(s) 482
Kzo9I GATC 3 cut(s) 7, 75, 102
LpnPI CCDG 4 cut(s) 98, 122, 164, 500
Lsp1109I GCAGC 5 cut(s) 112, 157, 173, 347, 355
MaeI CTAG 1 cut(s) 423
MaeII ACGT 1 cut(s) 235
MalI GATC 3 cut(s) 9, 77, 104
MboI GATC 3 cut(s) 7, 75, 102
MboII GAAGA 4 cut(s) 17, 88, 92, 322
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 20
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 6 cut(s) 41, 160, 181, 348, 358, 451
MroXI GAANNNNTTC 1 cut(s) 95
MspA1I CMGCKG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 4 cut(s) 170, 302, 344, 446
NcoI CCATGG 1 cut(s) 219
NdeII GATC 3 cut(s) 7, 75, 102
NlaIII CATG 6 cut(s) 123, 178, 199, 223, 328, 397
NlaIV GGNNCC 1 cut(s) 480
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 5 cut(s) 127, 147, 163, 337, 370
Ple19I CGATCG 1 cut(s) 78
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 480
PstI CTGCAG 2 cut(s) 130, 298
PstNI CAGNNNCTG 1 cut(s) 386
PsuI RGATCY 1 cut(s) 7
PvuI CGATCG 1 cut(s) 78
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 2 cut(s) 113, 480
RsaNI GTAC 2 cut(s) 112, 479
SacI GAGCTC 1 cut(s) 276
SatI GCNGC 5 cut(s) 126, 146, 162, 336, 369
Sau3AI GATC 3 cut(s) 7, 75, 102
SchI GAGTC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 276
SfcI CTRYAG 2 cut(s) 126, 294
Sse9I AATT 1 cut(s) 20
SsiI CCGC 3 cut(s) 69, 245, 438
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 276
StyI CCWWGG 2 cut(s) 219, 264
TaiI ACGT 1 cut(s) 238
TaqI TCGA 5 cut(s) 63, 78, 99, 105, 276
TasI AATT 1 cut(s) 20
TscAI CASTG 3 cut(s) 210, 298, 391
TseI GCWGC 5 cut(s) 125, 145, 161, 335, 368
TspDTI ATGAA 3 cut(s) 104, 313, 410
TspRI CASTG 3 cut(s) 210, 298, 391
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.