Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010890

Physical Location & Seq

Genomic Coordinates Reverse (-)

42108325 .. 42108768

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAGATCTGATCGCCCAGTTCAGCTTCCTCTCCAACCATGCCCTGCAGGACAAAAGCTTCGACCCCTCCACCATCGAAGACCTGATGAAGCTGTTCGAGATCGAAGCCTACAAGTCATGGGCTGCAGTGGAACTGGAGCAGCAACAAGAGGTGGAAGAAGCCGAGGCTTCCTTGCAAGAAGCTGAGGACTACATGGACTCGGTGATGGAGAGCGCCATGGATGAGTTCAGACGCTTCGAAGAGGAAATGGAGAGGATGTCGAAATATGAACTCGACAGCCTTGTCAAGACTGCTGAGACTGCAAGGAAGATGGGCAAGTTCATGGAGAATGCAGCCACTCTTGCTTCCAAGAAGTATATTGAAGCTGCACTTAACTCTGCCACTGCTTCAATGAAATCTGCTTGGAAGGGAATTTCTACTAACAAGGTTCACCCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.77

Weight (kDa)

4.53

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010890)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60870
fragaria_vesca	FvH4_5g29530 FvH4_5g29530
malus_domestica	MD08G1229100.v1.1 MD15G1423100.v1.1
prunus_persica	Prupe.1G568400_v2.0.a1
pyrus_communis	pycom15g37490 pycom15g37510
rosa_chinensis	RchiOBHm_Chr7g0222451
rosa_laevigata	RLG00000002058
rosa_multiflora	Rmu_sc0004638.1_g000013 Rmu_sc0035136.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236960
rosa_rugosa	Rorug07G0208800
rosa_samantha	Rh7AG350900 Rh7BG341800 Rh7CG368200 Rh7DG347800
rosa_wichuraiana	Rw7G029640 Rw7G029980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	414
AgsI	TTSAA	2 cut(s)	365, 393
AluBI	AGCT	5 cut(s)	27, 60, 94, 185, 368
AluI	AGCT	5 cut(s)	27, 60, 94, 185, 368
Alw26I	GTCTC	1 cut(s)	293
ApeKI	GCWGC	4 cut(s)	125, 142, 335, 368
ApoI	RAATTY	1 cut(s)	414
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	217, 425
AsuII	TTCGAA	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	112, 154, 347, 355
BccI	CCATC	3 cut(s)	83, 202, 307
BcoDI	GTCTC	1 cut(s)	293
BfmI	CTRYAG	2 cut(s)	47, 126
BfoI	RGCGCY	1 cut(s)	219
BglII	AGATCT	1 cut(s)	7
BisI	GCNGC	4 cut(s)	126, 143, 336, 369
BlsI	GCNGC	4 cut(s)	127, 144, 337, 370
BmrI	ACTGGG	1 cut(s)	13
BmuI	ACTGGG	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	165, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bse1I	ACTGG	2 cut(s)	19, 141
BseDI	CCNNGG	2 cut(s)	165, 219
BseGI	GGATG	2 cut(s)	229, 264
BseMII	CTCAG	2 cut(s)	177, 288
BseNI	ACTGG	2 cut(s)	19, 141
BseXI	GCAGC	4 cut(s)	112, 154, 347, 355
BsgI	GTGCAG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	293
BsmI	GAATGC	1 cut(s)	337
Bsp119I	TTCGAA	1 cut(s)	240
Bsp143I	GATC	3 cut(s)	7, 12, 102
Bsp19I	CCATGG	1 cut(s)	219
BspCNI	CTCAG	2 cut(s)	178, 289
BspMAI	CTGCAG	2 cut(s)	51, 130
BspT104I	TTCGAA	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	19, 141
BssECI	CCNNGG	2 cut(s)	165, 219
BssMI	GATC	3 cut(s)	7, 12, 102
BssT1I	CCWWGG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	237
BstBI	TTCGAA	1 cut(s)	240
BstDEI	CTNAG	3 cut(s)	186, 297, 441
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	229, 264
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	3 cut(s)	10, 15, 105
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	3 cut(s)	7, 12, 102
BstMWI	GCNNNNNNNGC	2 cut(s)	302, 344
BstSFI	CTRYAG	2 cut(s)	47, 126
BstV1I	GCAGC	4 cut(s)	112, 154, 347, 355
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	229, 264
BtsI	GCAGTG	2 cut(s)	135, 384
BtsIMutI	CAGTG	2 cut(s)	135, 384
CfoI	GCGC	1 cut(s)	218
CseI	GACGC	1 cut(s)	243
CviAII	CATG	5 cut(s)	41, 120, 196, 220, 325
DdeI	CTNAG	3 cut(s)	186, 297, 441
DpnI	GATC	3 cut(s)	9, 14, 104
DpnII	GATC	3 cut(s)	7, 12, 102
DrdI	GACNNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	284
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	5 cut(s)	44, 123, 199, 223, 328
FaiI	YATR	7 cut(s)	42, 121, 197, 221, 270, 326, 360
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	5 cut(s)	40, 119, 195, 219, 324
Fnu4HI	GCNGC	4 cut(s)	126, 143, 336, 369
FokI	GGATG	2 cut(s)	236, 271
Fsp4HI	GCNGC	4 cut(s)	126, 143, 336, 369
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	4 cut(s)	126, 143, 336, 369
GsuI	CTGGAG	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	219
HgaI	GACGC	1 cut(s)	243
HhaI	GCGC	1 cut(s)	218
Hin1II	CATG	5 cut(s)	44, 123, 199, 223, 328
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	2 cut(s)	217, 425
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	12, 233
Hpy188III	TCNNGA	2 cut(s)	100, 289
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	1 cut(s)	403
HpyCH4V	TGCA	6 cut(s)	49, 128, 178, 305, 335, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	302, 344
HpyF3I	CTNAG	3 cut(s)	186, 297, 441
Hsp92II	CATG	5 cut(s)	44, 123, 199, 223, 328
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	3 cut(s)	7, 12, 102
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	32, 35, 59, 98, 122
Lsp1109I	GCAGC	4 cut(s)	112, 154, 347, 355
MalI	GATC	3 cut(s)	9, 14, 104
MboI	GATC	3 cut(s)	7, 12, 102
MboII	GAAGA	5 cut(s)	17, 92, 170, 254, 322
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	1 cut(s)	414
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	7 cut(s)	41, 79, 145, 160, 181, 238, 249
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	1 cut(s)	375
Mva1269I	GAATGC	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	302, 344
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	3 cut(s)	7, 12, 102
NlaIII	CATG	5 cut(s)	44, 123, 199, 223, 328
NmeAIII	GCCGAG	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	240
PctI	GAATGC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	127, 144, 337, 370
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PstI	CTGCAG	2 cut(s)	51, 130
PsuI	RGATCY	1 cut(s)	7
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	4 cut(s)	126, 143, 336, 369
Sau3AI	GATC	3 cut(s)	7, 12, 102
SbfI	CCTGCAGG	1 cut(s)	51
SchI	GAGTC	1 cut(s)	194
SdaI	CCTGCAGG	1 cut(s)	51
SetI	ASST	8 cut(s)	29, 62, 87, 96, 156, 187, 370, 432
SfcI	CTRYAG	2 cut(s)	47, 126
SfuI	TTCGAA	1 cut(s)	240
Sse8387I	CCTGCAGG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	7 cut(s)	63, 78, 99, 105, 240, 263, 276
TasI	AATT	1 cut(s)	414
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	2 cut(s)	135, 391
TseI	GCWGC	4 cut(s)	125, 142, 335, 368
TspDTI	ATGAA	4 cut(s)	104, 285, 313, 410
TspRI	CASTG	2 cut(s)	135, 391
XapI	RAATTY	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.