Prupe.1G587600_v2.0.a1

START domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016207
Physical Location & Seq
Forward (+)
47719091 .. 47720760
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G587600.1

Sequence Viewer

Length: 750 bp
ATGACCAGTCCAGCACCTTGCAGCCGATCCTGGTCCATAAGTGAGGACTCGCTTAAAAGGTATGTGCAGTTTGCAAGTGAAAGCTGCATACAAGAGTTACTGTCTGCTTCAGACTCGAACAGGGACACTAGGGTTGGGACTGCGAATAATGCCAATGATGGCTGGAAGGTTCTTACTCTCGACAACGGAGTAGAGATATCAAAACGCAGGTCTGGAAAAACTGCATCTTTTCACACCTTCCGTAGCCGCTGGCTGCTCACATCAGTATCACCCCAGCAATTCATCACCGTTGCCAACGCCATCGACGCTGCCAAGCAATGGGATCCTGATCTGGTAGAAGCAAGGTACATAAAAGATCTTGAAGATAACCTCAGCATCATCCGCCTCAAGTTTGGAGATAATGCTAAGCCTCTATTTAGAAATAGAGAATTCATAGTCTATGAGCGACGTGAAACCATGGAAGATGGCACCCTGGTGGTAGCAGTTGCTTCACTTCCAAAGGAGATAGCTGCTGGATTGCAACCAAAGCAAAATAATGCAATCAGGGGACTGCTGTTGCAATCAGGATGGGTAGTGGAGAAGCTTGAAGGCGACTCTTGTATGGTCACCTATGTTGTTCAGTTAGATCCTGCTGGATGGATGCCCAGGTGCTTTGTCAATCGACTTAACAACAGACTGGTTATGATCATTGAAAATCTAAAGAAACTGGCACAAGCTTGTCCAATTGATGGGGATGGGGGGGAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

250

Amino Acids

27.84

Weight (kDa)

6.63

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49800 AT5G49800
fragaria_vesca FvH4_5g27180
malus_domestica MD08G1250400.v1.1
prunus_persica Prupe.1G587600_v2.0.a1
pyrus_communis pycom08g21720
rosa_chinensis RchiOBHm_Chr7g0218271
rosa_laevigata RLG00000002383
rosa_multiflora Rmu_sc0004956.1_g000009
rosa_roxburghii Rroxscaffold_3G00241140
rosa_rugosa Rorug07G0176000
rosa_samantha Rh7AG317700 Rh7BG309000 Rh7DG316600
rosa_wichuraiana Rw7G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 467
AccB7I CCANNNNNTGG 2 cut(s) 318, 728
AciI CCGC 2 cut(s) 247, 382
AclWI GGATC 4 cut(s) 21, 317, 330, 620
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 318, 728
AgsI TTSAA 3 cut(s) 362, 587, 692
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 3 cut(s) 29, 471, 644
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 84, 509, 583, 716
AluI AGCT 4 cut(s) 84, 509, 583, 716
AlwI GGATC 4 cut(s) 21, 317, 330, 620
ApeKI GCWGC 5 cut(s) 21, 84, 253, 308, 509
ApoI RAATTY 1 cut(s) 428
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AspS9I GGNCC 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 261, 277, 598
AvaII GGWCC 1 cut(s) 33
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 467
BbvCI CCTCAGC 1 cut(s) 371
BbvI GCAGC 5 cut(s) 33, 71, 240, 295, 496
BccI CCATC 7 cut(s) 152, 308, 458, 561, 630, 722, 728
BciT130I CCWGG 3 cut(s) 31, 473, 646
BclI TGATCA 1 cut(s) 684
BfaI CTAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 198
BglII AGATCT 1 cut(s) 355
BisI GCNGC 6 cut(s) 22, 85, 247, 254, 309, 510
BlpI GCTNAGC 1 cut(s) 405
BlsI GCNGC 6 cut(s) 23, 86, 248, 255, 310, 511
Bme1390I CCNGG 3 cut(s) 31, 473, 646
Bme18I GGWCC 1 cut(s) 33
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 324, 469
BmrFI CCNGG 3 cut(s) 31, 473, 646
BmsI GCATC 3 cut(s) 233, 384, 630
Bpu10I CCTNAGC 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 456, 471, 644
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 728
Bse1I ACTGG 3 cut(s) 6, 681, 711
Bse3DI GCAATG 1 cut(s) 323
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 3 cut(s) 31, 473, 646
BseDI CCNNGG 3 cut(s) 456, 471, 644
BseGI GGATG 5 cut(s) 378, 572, 641, 645, 739
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 2 cut(s) 318, 728
BseMI GCAATG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 3 cut(s) 6, 681, 711
BseXI GCAGC 5 cut(s) 33, 71, 240, 295, 496
BseYI CCCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 467
BslFI GGGAC 3 cut(s) 137, 151, 561
BslI CCNNNNNNNGG 2 cut(s) 318, 728
BsmFI GGGAC 3 cut(s) 137, 151, 561
Bsp143I GATC 6 cut(s) 26, 322, 328, 355, 625, 684
Bsp1720I GCTNAGC 1 cut(s) 405
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 2 cut(s) 247, 382
BspCNI CTCAG 1 cut(s) 384
BspLI GGNNCC 2 cut(s) 324, 469
BspMI ACCTGC 1 cut(s) 198
BspPI GGATC 4 cut(s) 21, 317, 330, 620
BspT107I GGYRCC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 323
BsrI ACTGG 3 cut(s) 6, 681, 711
BssECI CCNNGG 3 cut(s) 456, 471, 644
BssMI GATC 6 cut(s) 26, 322, 328, 355, 625, 684
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 3 cut(s) 31, 473, 646
Bst4CI ACNGT 2 cut(s) 102, 289
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 371, 405
BstDSI CCRYGG 1 cut(s) 456
BstEII GGTNACC 1 cut(s) 604
BstF5I GGATG 5 cut(s) 378, 572, 641, 645, 739
BstKTI GATC 6 cut(s) 29, 325, 331, 358, 628, 687
BstMBI GATC 6 cut(s) 26, 322, 328, 355, 625, 684
BstMWI GCNNNNNNNGC 4 cut(s) 149, 305, 381, 526
BstNI CCWGG 3 cut(s) 31, 473, 646
BstPI GGTNACC 1 cut(s) 604
BstSCI CCNGG 3 cut(s) 29, 471, 644
BstV1I GCAGC 5 cut(s) 33, 71, 240, 295, 496
BstX2I RGATCY 3 cut(s) 322, 355, 625
BstYI RGATCY 3 cut(s) 322, 355, 625
BtgI CCRYGG 1 cut(s) 456
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 5 cut(s) 378, 572, 641, 645, 739
BveI ACCTGC 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 33
CseI GACGC 1 cut(s) 314
Csp6I GTAC 1 cut(s) 346
CviAII CATG 2 cut(s) 457, 747
CviJI RGCY 9 cut(s) 24, 84, 162, 246, 253, 409, 509, 583, 716
CviKI_1 RGCY 9 cut(s) 24, 84, 162, 246, 253, 409, 509, 583, 716
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 371, 405
DpnI GATC 6 cut(s) 28, 324, 330, 357, 627, 686
DpnII GATC 6 cut(s) 26, 322, 328, 355, 625, 684
EciI GGCGGA 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 456
Eco32I GATATC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 604
EcoO65I GGTNACC 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 29, 471, 644
EcoRV GATATC 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 2 cut(s) 460, 750
FaqI GGGAC 3 cut(s) 137, 151, 561
FatI CATG 2 cut(s) 456, 746
FbaI TGATCA 1 cut(s) 684
Fnu4HI GCNGC 6 cut(s) 22, 85, 247, 254, 309, 510
FokI GGATG 5 cut(s) 365, 579, 648, 652, 746
Fsp4HI GCNGC 6 cut(s) 22, 85, 247, 254, 309, 510
FspBI CTAG 1 cut(s) 129
GluI GCNGC 6 cut(s) 22, 85, 247, 254, 309, 510
GsaI CCCAGC 1 cut(s) 277
HgaI GACGC 1 cut(s) 314
Hin1II CATG 2 cut(s) 460, 750
HindIII AAGCTT 2 cut(s) 581, 714
HinfI GANTC 3 cut(s) 47, 113, 593
HphI GGTGA 3 cut(s) 261, 277, 598
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 5 cut(s) 179, 213, 326, 359, 564
Hpy99I CGWCG 2 cut(s) 308, 450
HpyAV CCTTC 3 cut(s) 160, 247, 581
HpyCH4III ACNGT 2 cut(s) 102, 289
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 8 cut(s) 21, 67, 74, 87, 224, 520, 539, 559
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 305, 381, 526
HpyF3I CTNAG 2 cut(s) 371, 405
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 2 cut(s) 460, 750
Ksp22I TGATCA 1 cut(s) 684
Kzo9I GATC 6 cut(s) 26, 322, 328, 355, 625, 684
Lsp1109I GCAGC 5 cut(s) 33, 71, 240, 295, 496
LweI GCATC 3 cut(s) 233, 384, 630
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 2 cut(s) 96, 604
MalI GATC 6 cut(s) 28, 324, 330, 357, 627, 686
MboI GATC 6 cut(s) 26, 322, 328, 355, 625, 684
MboII GAAGA 2 cut(s) 374, 473
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 3 cut(s) 322, 355, 625
MluCI AATT 3 cut(s) 278, 428, 723
MlyI GAGTC 3 cut(s) 41, 107, 587
MnlI CCTC 4 cut(s) 37, 380, 395, 420
MseI TTAA 2 cut(s) 54, 666
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 249
MspR9I CCNGG 3 cut(s) 31, 473, 646
MunI CAATTG 1 cut(s) 723
MvaI CCWGG 3 cut(s) 31, 473, 646
MwoI GCNNNNNNNGC 4 cut(s) 149, 305, 381, 526
NcoI CCATGG 1 cut(s) 456
NdeII GATC 6 cut(s) 26, 322, 328, 355, 625, 684
NlaIII CATG 2 cut(s) 460, 750
NlaIV GGNNCC 2 cut(s) 324, 469
NmuCI GTSAC 1 cut(s) 604
OliI CACNNNNGTG 1 cut(s) 473
PflMI CCANNNNNTGG 2 cut(s) 318, 728
PkrI GCNGC 6 cut(s) 23, 86, 248, 255, 310, 511
PleI GAGTC 3 cut(s) 41, 107, 587
PpsI GAGTC 3 cut(s) 41, 107, 587
Psp6I CCWGG 3 cut(s) 29, 471, 644
PspEI GGTNACC 1 cut(s) 604
PspFI CCCAGC 1 cut(s) 273
PspGI CCWGG 3 cut(s) 29, 471, 644
PspN4I GGNNCC 2 cut(s) 324, 469
PspPI GGNCC 1 cut(s) 33
PsuI RGATCY 3 cut(s) 322, 355, 625
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 2 cut(s) 54, 666
SatI GCNGC 6 cut(s) 22, 85, 247, 254, 309, 510
Sau3AI GATC 6 cut(s) 26, 322, 328, 355, 625, 684
Sau96I GGNCC 1 cut(s) 33
SchI GAGTC 3 cut(s) 41, 107, 587
ScrFI CCNGG 3 cut(s) 31, 473, 646
SfaNI GCATC 3 cut(s) 233, 384, 630
SinI GGWCC 1 cut(s) 33
SmiMI CAYNNNNRTG 1 cut(s) 473
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 3 cut(s) 278, 428, 723
SsiI CCGC 2 cut(s) 247, 382
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 3 cut(s) 29, 471, 644
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 102, 289
TaiI ACGT 1 cut(s) 451
TaqI TCGA 4 cut(s) 116, 180, 303, 661
TasI AATT 3 cut(s) 278, 428, 723
TauI GCSGC 1 cut(s) 249
Tru1I TTAA 2 cut(s) 54, 666
Tru9I TTAA 2 cut(s) 54, 666
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 5 cut(s) 21, 84, 253, 308, 509
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 2 cut(s) 271, 421
TspGWI ACGGA 2 cut(s) 201, 230
Van91I CCANNNNNTGG 2 cut(s) 318, 728
VpaK11BI GGWCC 1 cut(s) 33
XapI RAATTY 1 cut(s) 428
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.