Rorug07G0176000

START domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016207
Physical Location & Seq
Forward (+)
14557777 .. 14558627
851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0176000.1

Sequence Viewer

Length: 762 bp
ATGAACTCCAGTTACCAGCTCTCAAACTCCAACCAGCAAAGCCTCGAATCAGTCTCCTCCATCAACAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCTTCACGACTCATTGCGACGAAGCGGTGATACTTGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTTAGGGAGCCGAACAAAAAGACCAGAATTTGGCTGGGGACGTACCCGACTGTTGAGATGGCCGCTCGGGCGCACGATGTGGCGGCATTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCGGCTTGGCGGTTGCCCGTTCCGGCTTCCAAAGACCAGCTCGACATTTGCAGGTCCGCCGCCGAGGCTGCTCAGACATTTCGGCCTGAGGAATTCGGCGGCGTCTCAAGCAGCTGCGACGACAACGAGATGGAACATGAGAATGAGAAAATTGAGATGGACAGCGAGAAGAAGAATGATGGCTTCTACGAGGACGAGGAGAGGGAACACGAGAATGAGAAGAAGAACGACGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTTGCATGGCGGAGTGTCCACTGCTCTCTCCGCCTCGTCATTACTTGGACGGTATCAACTGGGCAGACTATCAGGTGGAAAGCGAGTCAAATTTCAGCTTGTGGAGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

253

Amino Acids

28.99

Weight (kDa)

5.16

Isoelectric Point (pI)

67.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 64 - 114 5.7e-16 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49800 AT5G49800
fragaria_vesca FvH4_5g27180
malus_domestica MD08G1250400.v1.1
prunus_persica Prupe.1G587600_v2.0.a1
pyrus_communis pycom08g21720
rosa_chinensis RchiOBHm_Chr7g0218271
rosa_laevigata RLG00000002383
rosa_multiflora Rmu_sc0004956.1_g000009
rosa_roxburghii Rroxscaffold_3G00241140
rosa_rugosa Rorug07G0176000
rosa_samantha Rh7AG317700 Rh7BG309000 Rh7DG316600
rosa_wichuraiana Rw7G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 411
AccB7I CCANNNNNTGG 1 cut(s) 270
AccBSI CCGCTC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 3 cut(s) 267, 461, 739
AcyI GRCGYC 1 cut(s) 471
AdeI CACNNNGTG 1 cut(s) 319
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 2 cut(s) 270, 339
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 6 cut(s) 19, 99, 409, 483, 747, 756
AluI AGCT 6 cut(s) 19, 99, 409, 483, 747, 756
Alw26I GTCTC 3 cut(s) 58, 173, 478
Ama87I CYCGRG 2 cut(s) 71, 306
AoxI GGCC 4 cut(s) 143, 300, 330, 452
ApeKI GCWGC 3 cut(s) 437, 480, 483
ApoI RAATTY 3 cut(s) 267, 461, 739
AspLEI GCGC 3 cut(s) 213, 313, 625
AspS9I GGNCC 2 cut(s) 331, 423
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 2 cut(s) 71, 306
AvaII GGWCC 1 cut(s) 423
AxyI CCTNAGG 2 cut(s) 335, 456
BarI GAAGNNNNNNTAC 2 cut(s) 111, 143
BauI CACGAG 2 cut(s) 94, 578
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 3 cut(s) 424, 470, 492
BccI CCATC 5 cut(s) 68, 292, 493, 520, 542
BceAI ACGGC 1 cut(s) 616
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 3 cut(s) 58, 173, 478
BfoI RGCGCY 1 cut(s) 626
BfuAI ACCTGC 1 cut(s) 411
BglI GCCNNNNNGGC 2 cut(s) 308, 434
BisI GCNGC 8 cut(s) 202, 303, 324, 429, 438, 469, 481, 484
BlsI GCNGC 8 cut(s) 203, 304, 325, 430, 439, 470, 482, 485
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 423
BmeT110I CYCGRG 2 cut(s) 71, 306
BmgT120I GGNCC 2 cut(s) 331, 423
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 718
BmuI ACTGGG 1 cut(s) 718
BpiI GAAGAC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 460
BpuMI CCSGG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 471
BsaJI CCNNGG 2 cut(s) 199, 432
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 339
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 9, 713
Bse21I CCTNAGG 2 cut(s) 335, 456
Bse3DI GCAATG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 199, 432
BseGI GGATG 1 cut(s) 619
BseLI CCNNNNNNNGG 2 cut(s) 270, 339
BseMI GCAATG 1 cut(s) 109
BseMII CTCAG 2 cut(s) 447, 455
BseNI ACTGG 2 cut(s) 9, 713
BseRI GAGGAG 2 cut(s) 46, 581
BseXI GCAGC 3 cut(s) 424, 470, 492
BseYI CCCAGC 1 cut(s) 274
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 4 cut(s) 145, 302, 332, 454
BsiHKCI CYCGRG 2 cut(s) 71, 306
BsiSI CCGG 3 cut(s) 159, 191, 392
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 2 cut(s) 270, 339
BsmAI GTCTC 3 cut(s) 58, 173, 478
BsmBI CGTCTC 1 cut(s) 478
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 4 cut(s) 145, 302, 332, 454
BsoBI CYCGRG 2 cut(s) 71, 306
BspANI GGCC 4 cut(s) 145, 302, 332, 454
BspCNI CTCAG 2 cut(s) 448, 454
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 249
BspMI ACCTGC 1 cut(s) 411
BspQI GCTCTTC 1 cut(s) 632
BsrBI CCGCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 9, 713
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 199, 432
BssNI GRCGYC 1 cut(s) 471
BssSI CACGAG 2 cut(s) 94, 578
Bst2BI CACGAG 2 cut(s) 94, 578
Bst4CI ACNGT 2 cut(s) 292, 701
Bst6I CTCTTC 2 cut(s) 612, 632
BstACI GRCGYC 1 cut(s) 471
BstC8I GCNNGC 4 cut(s) 143, 156, 348, 352
BstDEI CTNAG 3 cut(s) 335, 441, 456
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 619
BstFNI CGCG 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 626
BstHHI GCGC 3 cut(s) 213, 313, 625
BstMAI GTCTC 3 cut(s) 58, 173, 478
BstNSI RCATGY 2 cut(s) 354, 637
BstSCI CCNGG 1 cut(s) 189
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 424, 470, 492
BstV2I GAAGAC 1 cut(s) 72
Bsu36I CCTNAGG 2 cut(s) 335, 456
BsuRI GGCC 4 cut(s) 145, 302, 332, 454
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 619
BtsI GCAGTG 1 cut(s) 668
BtsIMutI CAGTG 1 cut(s) 668
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 4 cut(s) 143, 156, 348, 352
CfoI GCGC 3 cut(s) 213, 313, 625
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 331, 423
Cfr42I CCGCGG 1 cut(s) 202
CseI GACGC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 283
CviAII CATG 4 cut(s) 351, 506, 634, 655
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 335, 441, 456
DraIII CACNNNGTG 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 612, 632
EarI CTCTTC 2 cut(s) 612, 632
EciI GGCGGA 3 cut(s) 415, 669, 674
Eco47I GGWCC 1 cut(s) 423
Eco81I CCTNAGG 2 cut(s) 335, 456
Eco88I CYCGRG 2 cut(s) 71, 306
EcoRI GAATTC 1 cut(s) 461
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 4 cut(s) 354, 509, 637, 658
FaiI YATR 4 cut(s) 352, 507, 635, 656
FaqI GGGAC 1 cut(s) 292
FatI CATG 4 cut(s) 350, 505, 633, 654
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 8 cut(s) 202, 303, 324, 429, 438, 469, 481, 484
FokI GGATG 1 cut(s) 626
Fsp4HI GCNGC 8 cut(s) 202, 303, 324, 429, 438, 469, 481, 484
GlaI GCGC 3 cut(s) 212, 312, 624
GluI GCNGC 8 cut(s) 202, 303, 324, 429, 438, 469, 481, 484
GsaI CCCAGC 1 cut(s) 278
HaeII RGCGCY 1 cut(s) 626
HaeIII GGCC 4 cut(s) 145, 302, 332, 454
HapII CCGG 3 cut(s) 159, 191, 392
HgaI GACGC 1 cut(s) 460
HhaI GCGC 3 cut(s) 213, 313, 625
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 4 cut(s) 354, 509, 637, 658
Hin6I GCGC 3 cut(s) 211, 311, 623
HinP1I GCGC 3 cut(s) 211, 311, 623
HinfI GANTC 6 cut(s) 47, 74, 106, 181, 368, 734
HpaII CCGG 3 cut(s) 159, 191, 392
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 196, 668
Hpy188I TCNGA 2 cut(s) 91, 444
Hpy188III TCNNGA 1 cut(s) 103
Hpy8I GTNNAC 2 cut(s) 196, 668
Hpy99I CGWCG 3 cut(s) 119, 491, 602
HpyCH4III ACNGT 2 cut(s) 292, 701
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 2 cut(s) 420, 654
HpyF3I CTNAG 3 cut(s) 335, 441, 456
HpySE526I ACGT 1 cut(s) 281
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 4 cut(s) 354, 509, 637, 658
HspAI GCGC 3 cut(s) 211, 311, 623
KspI CCGCGG 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 2 cut(s) 247, 753
Lsp1109I GCAGC 3 cut(s) 424, 470, 492
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 11
MbiI CCGCTC 1 cut(s) 305
MboII GAAGA 8 cut(s) 72, 160, 550, 553, 601, 604, 619, 629
MluCI AATT 5 cut(s) 267, 358, 461, 519, 739
MlyI GAGTC 4 cut(s) 83, 100, 175, 743
MmeI TCCRAC 1 cut(s) 54
MslI CAYNNNNRTG 2 cut(s) 510, 582
MspA1I CMGCKG 2 cut(s) 201, 483
MspI CCGG 3 cut(s) 159, 191, 392
MspR9I CCNGG 1 cut(s) 191
MvnI CGCG 1 cut(s) 201
NciI CCSGG 1 cut(s) 191
NlaIII CATG 4 cut(s) 354, 509, 637, 658
NlaIV GGNNCC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 457
NspI RCATGY 2 cut(s) 354, 637
PaeI GCATGC 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 632
PcsI WCGNNNNNNNCGW 3 cut(s) 101, 143, 606
PfeI GAWTC 2 cut(s) 47, 368
PflMI CCANNNNNTGG 1 cut(s) 270
PkrI GCNGC 8 cut(s) 203, 304, 325, 430, 439, 470, 482, 485
PleI GAGTC 4 cut(s) 82, 100, 175, 742
PpsI GAGTC 4 cut(s) 82, 100, 175, 742
PspFI CCCAGC 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 2 cut(s) 331, 423
PsrI GAACNNNNNNTAC 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 483
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 2 cut(s) 510, 582
SacII CCGCGG 1 cut(s) 202
SapI GCTCTTC 1 cut(s) 632
SatI GCNGC 8 cut(s) 202, 303, 324, 429, 438, 469, 481, 484
Sau96I GGNCC 2 cut(s) 331, 423
SchI GAGTC 4 cut(s) 83, 100, 175, 743
ScrFI CCNGG 1 cut(s) 191
Sfr303I CCGCGG 1 cut(s) 202
SgrBI CCGCGG 1 cut(s) 202
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 2 cut(s) 510, 582
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SphI GCATGC 1 cut(s) 354
Sse9I AATT 5 cut(s) 267, 358, 461, 519, 739
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 2 cut(s) 292, 701
TaiI ACGT 1 cut(s) 284
TaqI TCGA 4 cut(s) 45, 137, 411, 630
TasI AATT 5 cut(s) 267, 358, 461, 519, 739
TauI GCSGC 5 cut(s) 204, 305, 326, 431, 471
TfiI GAWTC 2 cut(s) 47, 368
TscAI CASTG 1 cut(s) 675
TseI GCWGC 3 cut(s) 437, 480, 483
TspDTI ATGAA 2 cut(s) 17, 630
TspRI CASTG 1 cut(s) 675
Van91I CCANNNNNTGG 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 3 cut(s) 267, 461, 739
XceI RCATGY 2 cut(s) 354, 637
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XmiI GTMKAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.