Rw7G026970

START domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0016207
Physical Location & Seq
Reverse (-)
34479562 .. 34482111
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G026970.1

Sequence Viewer

Length: 756 bp
ATGGTTAGTCCAGCACCCTGCAGCCGATCCTGGTCTATAAGCGAGGACTCGCTTAAAAGATATGTGCAGTTTGCAAGTGAGAGCTGCATACAAGATTTACTGTCTGCTTCAGACTCCAACAGGGGAATTGGGATTAATAATGGCAATGATGGCTGGAAGGTTCTTACTCTTGAAAATGGAGTGGAGATATCGAAACGAAGGTCTGGAAATGGATCATTCCACACCTTCCGCAGCCGCTGGCTGCTCAGATCAGTATCACCCCAACAATTTATCACTGTTGCTAATGCCATAGATGCTGCCAAGCAATGGGATTCTGATCTGGTAGAAGCAAGGTACATAAAAGATCTTGACGACAACCTCAGCATCATCCGGCTCAAGTTTGGAGATAATTCCAAGCCCCTATTTAGAAACAGAGAATTTATAGTCTATGAGCGACGGGAAACCATGGAAGATGGCACTCTGGTGGTAGCAGTTGCTTCACTTCCAAAGGAGATAGCTGCTGGATTGCAACCAAAGCAAAATAATGCAATCAGGGGACTGCTGTTGCAATCAGGATGGGTCGTTGAGAGGCTTGATGGTGACTCTTGCATGGTCACCTATGTTGTTCAGGTACTGCTCTACTTTTTTAACTACATAATGTCCTTTTATTCATCCGTTTCCTTCACCATATCCTTATGGTTGCAGTTTTCACTTTTGAGTAACAACCCTCAGAAAAAACAAAAAAACAAAACTGTTCAACCTTACTTATTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

251

Amino Acids

28.55

Weight (kDa)

8.92

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 50 - 204 2.4e-07 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49800 AT5G49800
fragaria_vesca FvH4_5g27180
malus_domestica MD08G1250400.v1.1
prunus_persica Prupe.1G587600_v2.0.a1
pyrus_communis pycom08g21720
rosa_chinensis RchiOBHm_Chr7g0218271
rosa_laevigata RLG00000002383
rosa_multiflora Rmu_sc0004956.1_g000009
rosa_roxburghii Rroxscaffold_3G00241140
rosa_rugosa Rorug07G0176000
rosa_samantha Rh7AG317700 Rh7BG309000 Rh7DG316600
rosa_wichuraiana Rw7G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 306
AciI CCGC 2 cut(s) 229, 235
AclWI GGATC 2 cut(s) 21, 220
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 335, 612
AfiI CCNNNNNNNGG 1 cut(s) 306
AgsI TTSAA 2 cut(s) 173, 737
AjnI CCWGG 1 cut(s) 29
AleI CACNNNNGTG 1 cut(s) 461
AluBI AGCT 2 cut(s) 84, 497
AluI AGCT 2 cut(s) 84, 497
AlwI GGATC 2 cut(s) 21, 220
AlwNI CAGNNNCTG 2 cut(s) 237, 613
ApeKI GCWGC 6 cut(s) 21, 84, 231, 241, 296, 497
ApoI RAATTY 1 cut(s) 416
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AseI ATTAAT 1 cut(s) 135
AsuHPI GGTGA 4 cut(s) 249, 586, 590, 655
BbvCI CCTCAGC 1 cut(s) 359
BbvI GCAGC 6 cut(s) 33, 71, 228, 243, 283, 484
BccI CCATC 4 cut(s) 143, 446, 549, 569
BciT130I CCWGG 1 cut(s) 31
BfmI CTRYAG 1 cut(s) 19
BglII AGATCT 1 cut(s) 343
BisI GCNGC 7 cut(s) 22, 85, 232, 235, 242, 297, 498
BlsI GCNGC 7 cut(s) 23, 86, 233, 236, 243, 298, 499
Bme1390I CCNGG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 283, 372
Bpu10I CCTNAGC 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 359
BsaBI GATNNNNATC 2 cut(s) 253, 315
BsaJI CCNNGG 1 cut(s) 444
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse3DI GCAATG 2 cut(s) 151, 311
Bse8I GATNNNNATC 2 cut(s) 253, 315
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 3 cut(s) 366, 560, 650
BseJI GATNNNNATC 2 cut(s) 253, 315
BseLI CCNNNNNNNGG 1 cut(s) 306
BseMI GCAATG 2 cut(s) 151, 311
BseMII CTCAG 3 cut(s) 259, 373, 722
BseXI GCAGC 6 cut(s) 33, 71, 228, 243, 283, 484
BsgI GTGCAG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 1 cut(s) 306
BsmFI GGGAC 1 cut(s) 549
Bsp143I GATC 5 cut(s) 26, 212, 248, 316, 343
Bsp19I CCATGG 1 cut(s) 444
BspACI CCGC 2 cut(s) 229, 235
BspCNI CTCAG 3 cut(s) 258, 372, 721
BspMAI CTGCAG 1 cut(s) 23
BspPI GGATC 2 cut(s) 21, 220
BsrDI GCAATG 2 cut(s) 151, 311
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 5 cut(s) 26, 212, 248, 316, 343
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 3 cut(s) 102, 277, 733
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 245, 359, 708
BstDSI CCRYGG 1 cut(s) 444
BstEII GGTNACC 1 cut(s) 592
BstF5I GGATG 3 cut(s) 366, 560, 650
BstKTI GATC 5 cut(s) 29, 215, 251, 319, 346
BstMBI GATC 5 cut(s) 26, 212, 248, 316, 343
BstMWI GCNNNNNNNGC 3 cut(s) 150, 293, 514
BstNI CCWGG 1 cut(s) 31
BstPI GGTNACC 1 cut(s) 592
BstSCI CCNGG 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 6 cut(s) 33, 71, 228, 243, 283, 484
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 444
BtsCI GGATG 3 cut(s) 366, 560, 650
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 239
CaiI CAGNNNCTG 2 cut(s) 237, 613
Csp6I GTAC 2 cut(s) 334, 611
CviAII CATG 2 cut(s) 445, 589
CviJI RGCY 9 cut(s) 24, 84, 153, 234, 241, 373, 397, 497, 571
CviKI_1 RGCY 9 cut(s) 24, 84, 153, 234, 241, 373, 397, 497, 571
CviQI GTAC 2 cut(s) 334, 611
DdeI CTNAG 3 cut(s) 245, 359, 708
DpnI GATC 5 cut(s) 28, 214, 250, 318, 345
DpnII GATC 5 cut(s) 26, 212, 248, 316, 343
Eco130I CCWWGG 1 cut(s) 444
Eco32I GATATC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 93
Eco91I GGTNACC 1 cut(s) 592
EcoO65I GGTNACC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 29
EcoRV GATATC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 444
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 2 cut(s) 448, 592
FaqI GGGAC 1 cut(s) 549
FatI CATG 2 cut(s) 444, 588
Fnu4HI GCNGC 7 cut(s) 22, 85, 232, 235, 242, 297, 498
FokI GGATG 3 cut(s) 353, 567, 637
Fsp4HI GCNGC 7 cut(s) 22, 85, 232, 235, 242, 297, 498
GluI GCNGC 7 cut(s) 22, 85, 232, 235, 242, 297, 498
HapII CCGG 1 cut(s) 370
Hin1II CATG 2 cut(s) 448, 592
HinfI GANTC 4 cut(s) 47, 113, 311, 581
HpaII CCGG 1 cut(s) 370
HphI GGTGA 4 cut(s) 249, 586, 590, 655
Hpy188I TCNGA 4 cut(s) 112, 248, 316, 711
Hpy188III TCNNGA 4 cut(s) 170, 204, 347, 552
Hpy99I CGWCG 1 cut(s) 438
HpyAV CCTTC 4 cut(s) 151, 192, 235, 670
HpyCH4III ACNGT 3 cut(s) 102, 277, 733
HpyCH4V TGCA 9 cut(s) 21, 67, 74, 87, 508, 527, 547, 588, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 293, 514
HpyF3I CTNAG 3 cut(s) 245, 359, 708
Hsp92II CATG 2 cut(s) 448, 592
Kzo9I GATC 5 cut(s) 26, 212, 248, 316, 343
Lsp1109I GCAGC 6 cut(s) 33, 71, 228, 243, 283, 484
LweI GCATC 2 cut(s) 283, 372
MaeIII GTNAC 3 cut(s) 578, 592, 698
MalI GATC 5 cut(s) 28, 214, 250, 318, 345
MboI GATC 5 cut(s) 26, 212, 248, 316, 343
MboII GAAGA 1 cut(s) 461
MflI RGATCY 1 cut(s) 343
MluCI AATT 4 cut(s) 126, 266, 388, 416
MlyI GAGTC 3 cut(s) 41, 107, 575
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 4 cut(s) 37, 368, 561, 717
MseI TTAA 4 cut(s) 54, 135, 627, 754
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 237
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 1 cut(s) 31
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 3 cut(s) 150, 293, 514
NcoI CCATGG 1 cut(s) 444
NdeII GATC 5 cut(s) 26, 212, 248, 316, 343
NlaIII CATG 2 cut(s) 448, 592
NmuCI GTSAC 2 cut(s) 578, 592
OliI CACNNNNGTG 1 cut(s) 461
PfeI GAWTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 306
PkrI GCNGC 7 cut(s) 23, 86, 233, 236, 243, 298, 499
PleI GAGTC 3 cut(s) 41, 107, 575
PpsI GAGTC 3 cut(s) 41, 107, 575
PshBI ATTAAT 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 29
PspEI GGTNACC 1 cut(s) 592
PspGI CCWGG 1 cut(s) 29
PstI CTGCAG 1 cut(s) 23
PstNI CAGNNNCTG 2 cut(s) 237, 613
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 335, 612
RsaNI GTAC 2 cut(s) 334, 611
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 4 cut(s) 54, 135, 627, 754
SatI GCNGC 7 cut(s) 22, 85, 232, 235, 242, 297, 498
Sau3AI GATC 5 cut(s) 26, 212, 248, 316, 343
SchI GAGTC 3 cut(s) 41, 107, 575
ScrFI CCNGG 1 cut(s) 31
SfaNI GCATC 2 cut(s) 283, 372
SfcI CTRYAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 4 cut(s) 126, 266, 388, 416
SsiI CCGC 2 cut(s) 229, 235
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 3 cut(s) 102, 277, 733
TaqI TCGA 1 cut(s) 191
TasI AATT 4 cut(s) 126, 266, 388, 416
TauI GCSGC 1 cut(s) 237
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 4 cut(s) 54, 135, 627, 754
Tru9I TTAA 4 cut(s) 54, 135, 627, 754
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 2 cut(s) 578, 592
TseI GCWGC 6 cut(s) 21, 84, 231, 241, 296, 497
Tsp45I GTSAC 2 cut(s) 578, 592
TspDTI ATGAA 1 cut(s) 639
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 1 cut(s) 280
Van91I CCANNNNNTGG 1 cut(s) 306
VspI ATTAAT 1 cut(s) 135
XapI RAATTY 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.