Prupe.2G038800_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013985
Physical Location & Seq
Forward (+)
4172004 .. 4174753
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G038800.1

Sequence Viewer

Length: 1308 bp
ATGGCAACCCTATCCTTTGTTGCCTTCTCACTATGCCTCCTCTTTTTCTCCATAGCCCAAGGCCTTAGCAACAACCCCCAATGTAGTGAGGCCAAAGACCAGGGCTCTAACCTCCAAGTCTTCCATGTCTACAGCCCATGCTCTCCTTTCAGACCCACCAAGCCAATGTCATGGGAGGAGAGTGTGCTCCAAATGCAGGCCAAGGACCAGGCCAGGCTCCAGTTCTTGTCCAGCCTCGTGGCCAGGAAATCGGTTGTTCCGATTGCCTCCGGCAGGCAGATCATTCAGAGCCCTACGTACATTGTGAGGGCCAAGATTGGCACCCCACCTCAGACCTTGCTCATGGCTGTCGATACTAGCAATGATGCTGCTTGGGTCCCATGTAACGGCTGCGTTGGCTGCGGTTCCAATGTCTTTAATTCTGCCAAATCCACAACCTACAAGACCCTCGGTTGCCAAACTGCTCAGTGCAAGCAGGTACCCAACCCCACCTGCTTAGGCAGCACCTGCAGCTTCAACACCAGCTACGGCAGCTCCACCCTAGCCGCAAACCTCTCACAAGAAACCTTCACCCTAGCCACCGACGCCGTCCCCGGGTACACCTTTGGTTGCCTCCAGAAGACCACTGGCAGCTCCGTGCCGCCGCAGGGTCTTCTGGGTCTGGGCCGGGGCCCATTGTCCCTTCTATCTCAGACCCAAAACCTCTACCAATCTACATTCTCATACTGCCTACCTAGCTTCAAGTCCCTAAACTTTTCTGGGTCATTGAGGCTTGGACCTGTTGGGCAACCCATAAGGATCAAGTACACCCCACTGCTCAAGAACCCTAGAAGATCATCACTCTACTATGTGAACTTAAATGCAATTAGGGTTGGTAGGAGAATTGTGGATATCCCTCCTGCTGCCTTGGCTTTCAATCCCACAACCGGTGCAGGGACCATCATTGATTCAGGAACCGTATTCACCCGGCTAGTGGAACCGGCCTACGTAGCAGTACGAAACGAGTTCCGCAGGCGGGTCGGTAAATACCCGTTTCAAACCCTAGGCGGGTTCGACACCTGCTACTCCGTGCCCTTTGTTGTACCTACCATAACGTTCATGTTCTCAGGCATGAACGTGACACTGCCTGAAGACAACATTGTAATCCACAGCACAGCTGGGAGCATCACATGTCTAGCCATGGCAGCGGCACCAGACAACGTGAACTCTGTGCTCAATGTGATTGCCAATATGCAGCAGCAGAACCACAGGGTACTCATTGATGTGCCCAATTCAAGGCTTGGGGTGGCCCGTGAGCGCTGCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

436

Amino Acids

46.94

Weight (kDa)

9.34

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54400 AT5G07030
fragaria_vesca FvH4_7g03340
malus_domestica MD02G1283800.v1.1 MD07G1049400.v1.1
prunus_persica Prupe.2G038800_v2.0.a1
pyrus_communis pycom02g24180 pycom07g03560
rosa_chinensis RchiOBHm_Chr1g0325651
rosa_laevigata RLG00000030113
rosa_roxburghii Rroxscaffold_4G00324550
rosa_rugosa Rorug01G0053600
rosa_samantha Rh1AG069200 Rh1BG056600 Rh1CG069600 Rh1DG074200
rosa_wichuraiana Rw1G005720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 500, 515, 1067
Acc36I ACCTGC 4 cut(s) 466, 500, 515, 1067
Acc65I GGTACC 1 cut(s) 478
AccB1I GGYRCC 3 cut(s) 320, 478, 1189
AccI GTMKAC 1 cut(s) 129
AciI CCGC 8 cut(s) 402, 546, 641, 644, 1009, 1015, 1047, 1187
AclI AACGTT 1 cut(s) 1094
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 1149
AcyI GRCGYC 1 cut(s) 585
AfaI GTAC 7 cut(s) 299, 480, 599, 806, 996, 1083, 1254
AfeI AGCGCT 1 cut(s) 1298
AflIII ACRYGT 1 cut(s) 1169
AgeI ACCGGT 1 cut(s) 926
AgsI TTSAA 5 cut(s) 517, 742, 916, 1037, 1275
AjnI CCWGG 4 cut(s) 99, 207, 212, 242
AluBI AGCT 6 cut(s) 513, 525, 534, 633, 738, 1157
AluI AGCT 6 cut(s) 513, 525, 534, 633, 738, 1157
Alw21I GWGCWC 2 cut(s) 189, 1215
AlwI GGATC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 507
Ama87I CYCGRG 1 cut(s) 593
Aor51HI AGCGCT 1 cut(s) 1298
ApaI GGGCCC 1 cut(s) 674
AsiGI ACCGGT 1 cut(s) 926
Asp718I GGTACC 1 cut(s) 478
AspA2I CCTAGG 1 cut(s) 1042
AspLEI GCGC 1 cut(s) 1299
AspS9I GGNCC 9 cut(s) 205, 309, 376, 664, 670, 671, 776, 936, 1288
AsuC2I CCSGG 4 cut(s) 594, 595, 668, 967
AsuHPI GGTGA 2 cut(s) 562, 955
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 4 cut(s) 205, 376, 776, 936
AvrII CCTAGG 1 cut(s) 1042
BaeGI GKGCMC 3 cut(s) 674, 1074, 1269
BalI TGGCCA 1 cut(s) 242
BanI GGYRCC 3 cut(s) 320, 478, 1189
BanII GRGCYC 3 cut(s) 107, 293, 674
BauI CACGAG 1 cut(s) 236
BbsI GAAGAC 4 cut(s) 112, 626, 644, 1137
Bbv12I GWGCWC 2 cut(s) 189, 1215
BccI CCATC 1 cut(s) 947
BceAI ACGGC 3 cut(s) 403, 544, 572
BcgI CGANNNNNNTGC 2 cut(s) 1000, 1034
BciT130I CCWGG 4 cut(s) 101, 209, 214, 244
BcnI CCSGG 4 cut(s) 594, 595, 668, 967
BfaI CTAG 8 cut(s) 357, 542, 575, 735, 828, 971, 1043, 1175
BfmI CTRYAG 2 cut(s) 130, 508
BfoI RGCGCY 1 cut(s) 1300
BfuAI ACCTGC 4 cut(s) 466, 500, 515, 1067
BlnI CCTAGG 1 cut(s) 1042
Bme1390I CCNGG 8 cut(s) 101, 209, 214, 244, 594, 595, 668, 967
Bme18I GGWCC 4 cut(s) 205, 376, 776, 936
BmeT110I CYCGRG 1 cut(s) 593
BmgT120I GGNCC 9 cut(s) 205, 309, 376, 664, 670, 671, 776, 936, 1288
BmrFI CCNGG 8 cut(s) 101, 209, 214, 244, 594, 595, 668, 967
BmsI GCATC 2 cut(s) 355, 1173
BpiI GAAGAC 4 cut(s) 112, 626, 644, 1137
BpmI CTGGAG 2 cut(s) 203, 599
Bpu10I CCTNAGC 2 cut(s) 65, 496
BpuEI CTTGAG 1 cut(s) 803
BpuMI CCSGG 4 cut(s) 594, 595, 668, 967
BsaAI YACGTR 2 cut(s) 297, 988
BsaHI GRCGYC 1 cut(s) 585
BsaWI WCCGGW 1 cut(s) 926
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 518, 548
Bse118I RCCGGY 2 cut(s) 926, 979
Bse1I ACTGG 2 cut(s) 220, 631
Bse3DI GCAATG 1 cut(s) 367
BseBI CCWGG 4 cut(s) 101, 209, 214, 244
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 4 cut(s) 344, 479, 704, 1119
BseNI ACTGG 2 cut(s) 220, 631
BseRI GAGGAG 2 cut(s) 29, 191
BseSI GKGCMC 3 cut(s) 674, 1074, 1269
BseYI CCCAGC 1 cut(s) 1157
BsgI GTGCAG 2 cut(s) 951, 1285
BshNI GGYRCC 3 cut(s) 320, 478, 1189
BshTI ACCGGT 1 cut(s) 926
BsiHKAI GWGCWC 2 cut(s) 189, 1215
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 6 cut(s) 270, 594, 667, 927, 967, 980
BslFI GGGAC 5 cut(s) 362, 575, 664, 730, 949
BsmFI GGGAC 5 cut(s) 362, 575, 664, 730, 949
BsoBI CYCGRG 1 cut(s) 593
Bsp120I GGGCCC 1 cut(s) 670
Bsp1286I GDGCHC 7 cut(s) 107, 189, 293, 674, 1074, 1215, 1269
Bsp143I GATC 3 cut(s) 279, 798, 833
Bsp19I CCATGG 1 cut(s) 1179
BspACI CCGC 8 cut(s) 402, 546, 641, 644, 1009, 1015, 1047, 1187
BspCNI CTCAG 4 cut(s) 343, 478, 703, 1118
BspMAI CTGCAG 1 cut(s) 512
BspMI ACCTGC 4 cut(s) 466, 500, 515, 1067
BspPI GGATC 1 cut(s) 806
BspT107I GGYRCC 3 cut(s) 320, 478, 1189
BsrDI GCAATG 1 cut(s) 367
BsrFI RCCGGY 2 cut(s) 926, 979
BsrI ACTGG 2 cut(s) 220, 631
BssAI RCCGGY 2 cut(s) 926, 979
BssMI GATC 3 cut(s) 279, 798, 833
BssNI GRCGYC 1 cut(s) 585
BssSI CACGAG 1 cut(s) 236
BssT1I CCWWGG 5 cut(s) 58, 201, 906, 1042, 1179
Bst2BI CACGAG 1 cut(s) 236
Bst2UI CCWGG 4 cut(s) 101, 209, 214, 244
Bst4CI ACNGT 1 cut(s) 958
BstACI GRCGYC 1 cut(s) 585
BstAPI GCANNNNNTGC 1 cut(s) 507
BstBAI YACGTR 2 cut(s) 297, 988
BstC8I GCNNGC 4 cut(s) 198, 275, 473, 1013
BstDEI CTNAG 6 cut(s) 65, 330, 465, 496, 690, 1105
BstDSI CCRYGG 1 cut(s) 1179
BstENI CCTNNNNNAGG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 1300
BstHHI GCGC 1 cut(s) 1299
BstKTI GATC 3 cut(s) 282, 801, 836
BstMBI GATC 3 cut(s) 279, 798, 833
BstNI CCWGG 4 cut(s) 101, 209, 214, 244
BstNSI RCATGY 1 cut(s) 1173
BstSCI CCNGG 8 cut(s) 99, 207, 212, 242, 592, 593, 666, 965
BstSFI CTRYAG 2 cut(s) 130, 508
BstSLI GKGCMC 3 cut(s) 674, 1074, 1269
BstSNI TACGTA 2 cut(s) 297, 988
BstV2I GAAGAC 4 cut(s) 112, 626, 644, 1137
BstXI CCANNNNNNTGG 2 cut(s) 171, 238
BtgI CCRYGG 1 cut(s) 1179
BtsI GCAGTG 2 cut(s) 812, 1121
BtsIMutI CAGTG 4 cut(s) 473, 624, 812, 1121
BveI ACCTGC 4 cut(s) 466, 500, 515, 1067
Cac8I GCNNGC 4 cut(s) 198, 275, 473, 1013
CaiI CAGNNNCTG 1 cut(s) 507
CfoI GCGC 1 cut(s) 1299
Cfr10I RCCGGY 2 cut(s) 926, 979
Cfr13I GGNCC 9 cut(s) 205, 309, 376, 664, 670, 671, 776, 936, 1288
Cfr9I CCCGGG 1 cut(s) 593
CseI GACGC 1 cut(s) 593
Csp6I GTAC 7 cut(s) 298, 479, 598, 805, 995, 1082, 1253
CspAI ACCGGT 1 cut(s) 926
CviAII CATG 9 cut(s) 125, 138, 171, 343, 381, 1099, 1111, 1170, 1180
CviQI GTAC 7 cut(s) 298, 479, 598, 805, 995, 1082, 1253
DdeI CTNAG 6 cut(s) 65, 330, 465, 496, 690, 1105
DpnI GATC 3 cut(s) 281, 800, 835
DpnII GATC 3 cut(s) 279, 798, 833
EaeI YGGCCR 1 cut(s) 240
Eco105I TACGTA 2 cut(s) 297, 988
Eco130I CCWWGG 5 cut(s) 58, 201, 906, 1042, 1179
Eco147I AGGCCT 1 cut(s) 63
Eco24I GRGCYC 3 cut(s) 107, 293, 674
Eco32I GATATC 1 cut(s) 892
Eco47I GGWCC 4 cut(s) 205, 376, 776, 936
Eco47III AGCGCT 1 cut(s) 1298
Eco57I CTGAAG 1 cut(s) 1149
Eco88I CYCGRG 1 cut(s) 593
EcoNI CCTNNNNNAGG 1 cut(s) 271
EcoO109I RGGNCCY 2 cut(s) 376, 670
EcoRII CCWGG 4 cut(s) 99, 207, 212, 242
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 5 cut(s) 58, 201, 906, 1042, 1179
EcoT38I GRGCYC 3 cut(s) 107, 293, 674
ErhI CCWWGG 5 cut(s) 58, 201, 906, 1042, 1179
FaeI CATG 9 cut(s) 128, 141, 174, 346, 384, 1102, 1114, 1173, 1183
FaqI GGGAC 5 cut(s) 362, 575, 664, 730, 949
FatI CATG 9 cut(s) 124, 137, 170, 342, 380, 1098, 1110, 1169, 1179
FauI CCCGC 2 cut(s) 1008, 1040
FblI GTMKAC 1 cut(s) 129
FriOI GRGCYC 3 cut(s) 107, 293, 674
FspBI CTAG 8 cut(s) 357, 542, 575, 735, 828, 971, 1043, 1175
GlaI GCGC 1 cut(s) 1298
GsaI CCCAGC 1 cut(s) 1161
GsuI CTGGAG 2 cut(s) 203, 599
HaeII RGCGCY 1 cut(s) 1300
HapII CCGG 6 cut(s) 270, 594, 667, 927, 967, 980
HgaI GACGC 1 cut(s) 593
HhaI GCGC 1 cut(s) 1299
Hin1I GRCGYC 1 cut(s) 585
Hin1II CATG 9 cut(s) 128, 141, 174, 346, 384, 1102, 1114, 1173, 1183
Hin6I GCGC 1 cut(s) 1297
HinP1I GCGC 1 cut(s) 1297
HinfI GANTC 1 cut(s) 947
HpaII CCGG 6 cut(s) 270, 594, 667, 927, 967, 980
HphI GGTGA 2 cut(s) 562, 955
Hpy166II GTNNAC 5 cut(s) 130, 600, 807, 853, 1204
Hpy188I TCNGA 5 cut(s) 152, 261, 288, 333, 693
Hpy188III TCNNGA 3 cut(s) 616, 820, 951
Hpy8I GTNNAC 5 cut(s) 130, 600, 807, 853, 1204
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 3 cut(s) 34, 577, 692
HpyCH4III ACNGT 1 cut(s) 958
HpyCH4IV ACGT 5 cut(s) 296, 987, 1094, 1116, 1200
HpyCH4V TGCA 7 cut(s) 196, 471, 510, 863, 932, 1234, 1302
HpyF3I CTNAG 6 cut(s) 65, 330, 465, 496, 690, 1105
HpySE526I ACGT 5 cut(s) 296, 987, 1094, 1116, 1200
Hsp92I GRCGYC 1 cut(s) 585
Hsp92II CATG 9 cut(s) 128, 141, 174, 346, 384, 1102, 1114, 1173, 1183
HspAI GCGC 1 cut(s) 1297
KflI GGGWCCC 1 cut(s) 376
KpnI GGTACC 1 cut(s) 482
Kzo9I GATC 3 cut(s) 279, 798, 833
LmnI GCTCC 5 cut(s) 192, 222, 539, 638, 1161
LweI GCATC 2 cut(s) 355, 1173
MaeI CTAG 8 cut(s) 357, 542, 575, 735, 828, 971, 1043, 1175
MaeII ACGT 5 cut(s) 296, 987, 1094, 1116, 1200
MaeIII GTNAC 2 cut(s) 383, 1117
MalI GATC 3 cut(s) 281, 800, 835
MboI GATC 3 cut(s) 279, 798, 833
MboII GAAGA 5 cut(s) 112, 631, 644, 843, 1142
MhlI GDGCHC 7 cut(s) 107, 189, 293, 674, 1074, 1215, 1269
MlsI TGGCCA 1 cut(s) 242
MluCI AATT 4 cut(s) 418, 864, 882, 1270
MluNI TGGCCA 1 cut(s) 242
Mox20I TGGCCA 1 cut(s) 242
MscI TGGCCA 1 cut(s) 242
MseI TTAA 3 cut(s) 417, 857, 1306
MslI CAYNNNNRTG 2 cut(s) 1115, 1262
Msp20I TGGCCA 1 cut(s) 242
MspA1I CMGCKG 2 cut(s) 1157, 1187
MspI CCGG 6 cut(s) 270, 594, 667, 927, 967, 980
MspR9I CCNGG 8 cut(s) 101, 209, 214, 244, 594, 595, 668, 967
MvaI CCWGG 4 cut(s) 101, 209, 214, 244
NciI CCSGG 4 cut(s) 594, 595, 668, 967
NcoI CCATGG 1 cut(s) 1179
NdeII GATC 3 cut(s) 279, 798, 833
NlaIII CATG 9 cut(s) 128, 141, 174, 346, 384, 1102, 1114, 1173, 1183
NmuCI GTSAC 1 cut(s) 1117
NspI RCATGY 1 cut(s) 1173
PaqCI CACCTGC 3 cut(s) 500, 515, 1067
PceI AGGCCT 1 cut(s) 63
PciI ACATGT 1 cut(s) 1169
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PfeI GAWTC 1 cut(s) 947
PflFI GACNNNGTC 1 cut(s) 587
PinAI ACCGGT 1 cut(s) 926
Ppu21I YACGTR 2 cut(s) 297, 988
PpuMI RGGWCCY 1 cut(s) 376
PscI ACATGT 1 cut(s) 1169
Psp1406I AACGTT 1 cut(s) 1094
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 4 cut(s) 99, 207, 212, 242
PspFI CCCAGC 1 cut(s) 1157
PspGI CCWGG 4 cut(s) 99, 207, 212, 242
PspOMI GGGCCC 1 cut(s) 670
PspPI GGNCC 9 cut(s) 205, 309, 376, 664, 670, 671, 776, 936, 1288
PspPPI RGGWCCY 1 cut(s) 376
PstI CTGCAG 1 cut(s) 512
PstNI CAGNNNCTG 1 cut(s) 507
PsyI GACNNNGTC 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 1157
RsaI GTAC 7 cut(s) 299, 480, 599, 806, 996, 1083, 1254
RsaNI GTAC 7 cut(s) 298, 479, 598, 805, 995, 1082, 1253
RseI CAYNNNNRTG 2 cut(s) 1115, 1262
SaqAI TTAA 3 cut(s) 417, 857, 1306
Sau3AI GATC 3 cut(s) 279, 798, 833
Sau96I GGNCC 9 cut(s) 205, 309, 376, 664, 670, 671, 776, 936, 1288
ScrFI CCNGG 8 cut(s) 101, 209, 214, 244, 594, 595, 668, 967
SduI GDGCHC 7 cut(s) 107, 189, 293, 674, 1074, 1215, 1269
SfaNI GCATC 2 cut(s) 355, 1173
SfcI CTRYAG 2 cut(s) 130, 508
SinI GGWCC 4 cut(s) 205, 376, 776, 936
SmaI CCCGGG 1 cut(s) 595
SmiMI CAYNNNNRTG 2 cut(s) 1115, 1262
SmlI CTYRAG 1 cut(s) 818
SmoI CTYRAG 1 cut(s) 818
SnaBI TACGTA 2 cut(s) 297, 988
Sse9I AATT 4 cut(s) 418, 864, 882, 1270
SseBI AGGCCT 1 cut(s) 63
SsiI CCGC 8 cut(s) 402, 546, 641, 644, 1009, 1015, 1047, 1187
SspMI CTAG 8 cut(s) 357, 542, 575, 735, 828, 971, 1043, 1175
StuI AGGCCT 1 cut(s) 63
StyD4I CCNGG 8 cut(s) 99, 207, 212, 242, 592, 593, 666, 965
StyI CCWWGG 5 cut(s) 58, 201, 906, 1042, 1179
TaaI ACNGT 1 cut(s) 958
TaiI ACGT 5 cut(s) 299, 990, 1097, 1119, 1203
TaqI TCGA 2 cut(s) 351, 1053
TasI AATT 4 cut(s) 418, 864, 882, 1270
TatI WGTACW 1 cut(s) 804
TauI GCSGC 4 cut(s) 548, 643, 646, 1190
TfiI GAWTC 1 cut(s) 947
Tru1I TTAA 3 cut(s) 417, 857, 1306
Tru9I TTAA 3 cut(s) 417, 857, 1306
TscAI CASTG 4 cut(s) 473, 631, 819, 1128
TseFI GTSAC 1 cut(s) 1117
Tsp45I GTSAC 1 cut(s) 1117
TspDTI ATGAA 2 cut(s) 1087, 1127
TspGWI ACGGA 2 cut(s) 625, 1057
TspMI CCCGGG 1 cut(s) 593
TspRI CASTG 4 cut(s) 473, 631, 819, 1128
Tth111I GACNNNGTC 1 cut(s) 587
VpaK11BI GGWCC 4 cut(s) 205, 376, 776, 936
XagI CCTNNNNNAGG 1 cut(s) 271
XceI RCATGY 1 cut(s) 1173
XcmI CCANNNNNNNNNTGG 2 cut(s) 623, 1154
XmaI CCCGGG 1 cut(s) 593
XmaJI CCTAGG 1 cut(s) 1042
XmiI GTMKAC 1 cut(s) 129
XspI CTAG 8 cut(s) 357, 542, 575, 735, 828, 971, 1043, 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.