pycom07g03560

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013985
Physical Location & Seq
Reverse (-)
3005599 .. 3007610
2012 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g03560.3

Sequence Viewer

Length: 1176 bp
ATGCTCTCCCTTCAGACCCTCCAAACCAATGTCATGGGAGGAGAGTGTCCTCCAAATGCAGGCCAAGGACCAGGCCAGGCTTCAGTTCCTGTCCAGCCTCGTCGCCAAAAAATCGGTTGTTCCGATCGATCCTCTGGCCGGCAGATCATTCAGAGCCCCACTTACATTGTGAAGGCTAAGATCGGCACACCACCTCAGACTTTGCTCATGGCTGTTGACACTAGCAGCGATGCTGCTTGGGTTCCATGCAATGGCTGCGTTGGCTGCTCCTCCAGTGTGTTTAACTCTGCCAAATCCACAACCTACAAGAACCTTGGCTGCCAAGCTGCTCAGTGCAAGCAGGTCCCCAACCCCACTTGCTTAGGCAGCTCCTGCGGTTTCAACATGACTTACGGTAGCTCCAGCATAGCAGCTAACCTCTCACAAGAAACCTTCACCCTAGCCACCGACTCCGTCCCCGGCTACACATTTGGTTGCATCCAGAAGGCCACCGGCAGCTCCGTTCCGCCACATGGTCTTCTGGGGCTTGGCCGGGGACCATTGTCACTTCTATCCCAAACCCAAAACCTCTATCAATCCACATTCTCATACTGCCTCCCCAGCTTCAAGTCCCCAAACTTTTCTGGATCATTGAGACTTGGCCCTGTTGGGCAGCCCAAGAGGATCAAGTACACCCCACTGCTCAAGAACCCTAGAAGATCATCACTCTATTATGTGAACTTAAATGCAATTAGGGTTGGCAGGAGAATTGTTGATATCCCTCCTGCTGCTTTGGCATTCAATCCCACCACTGGTTCAGGGACCATCTTTGATTCAGGAACCGTGTTCACTCGATTAGTGCAACCGGCCTACCTCGCCGTCCGAAATGAGTTCCGAAGGCGAGTGGGCCCAAAAATACCGGTGACATCCCTAGGCGGGTTCGACACATGCTACTCAGTCCCCTTTGTCGTGCCTACGATAACGTTCATGTTCTCGGGCATGAACGTGACACTGCCACAGGACAACATTGTAATCCACAGCACAGCTGGTAGCATCACATGTCTAGCCATGGCAGCCTCACCAGACAATTTGAACTCGGTACTAAATGTCATTGCCAATATGCAGCAACAGAACCACAGAGTGCTCATTGATGTGCCAAACTCAAGGCTTGGTGTGGCCCGTGAGGCCTGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

392

Amino Acids

41.56

Weight (kDa)

9.55

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54400 AT5G07030
fragaria_vesca FvH4_7g03340
malus_domestica MD02G1283800.v1.1 MD07G1049400.v1.1
prunus_persica Prupe.2G038800_v2.0.a1
pyrus_communis pycom02g24180 pycom07g03560
rosa_chinensis RchiOBHm_Chr1g0325651
rosa_laevigata RLG00000030113
rosa_roxburghii Rroxscaffold_4G00324550
rosa_rugosa Rorug01G0053600
rosa_samantha Rh1AG069200 Rh1BG056600 Rh1CG069600 Rh1DG074200
rosa_wichuraiana Rw1G005720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 251
AciI CCGC 3 cut(s) 375, 506, 915
AclI AACGTT 1 cut(s) 962
AclWI GGATC 3 cut(s) 123, 634, 671
AcoI YGGCCR 2 cut(s) 136, 529
AcuI CTGAAG 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 1120
AfaI GTAC 2 cut(s) 671, 1080
AfiI CCNNNNNNNGG 6 cut(s) 59, 138, 251, 512, 791, 915
AflIII ACRYGT 1 cut(s) 1037
AgeI ACCGGT 1 cut(s) 898
AgsI TTSAA 4 cut(s) 382, 607, 781, 1072
AjnI CCWGG 2 cut(s) 70, 75
AluBI AGCT 7 cut(s) 326, 369, 399, 413, 498, 603, 1025
AluI AGCT 7 cut(s) 326, 369, 399, 413, 498, 603, 1025
Alw21I GWGCWC 1 cut(s) 1125
Alw26I GTCTC 1 cut(s) 628
AlwI GGATC 3 cut(s) 123, 634, 671
AlwNI CAGNNNCTG 2 cut(s) 89, 372
Ama87I CYCGRG 1 cut(s) 973
ApaI GGGCCC 1 cut(s) 890
AsiGI ACCGGT 1 cut(s) 898
AspA2I CCTAGG 1 cut(s) 910
AspS9I GGNCC 8 cut(s) 68, 343, 536, 641, 801, 886, 887, 1156
AsuC2I CCSGG 2 cut(s) 459, 533
AsuHPI GGTGA 3 cut(s) 427, 913, 1050
AvaI CYCGRG 1 cut(s) 973
AvaII GGWCC 4 cut(s) 68, 343, 536, 801
AvrII CCTAGG 1 cut(s) 910
BaeGI GKGCMC 1 cut(s) 890
BanII GRGCYC 2 cut(s) 158, 890
BbsI GAAGAC 1 cut(s) 509
Bbv12I GWGCWC 1 cut(s) 1125
BccI CCATC 1 cut(s) 812
BceAI ACGGC 1 cut(s) 842
BciT130I CCWGG 2 cut(s) 72, 77
BcnI CCSGG 2 cut(s) 459, 533
BcoDI GTCTC 1 cut(s) 628
BfaI CTAG 5 cut(s) 222, 440, 693, 911, 1043
BfuAI ACCTGC 1 cut(s) 331
BglI GCCNNNNNGGC 1 cut(s) 1163
BlnI CCTAGG 1 cut(s) 910
Bme1390I CCNGG 4 cut(s) 72, 77, 459, 533
Bme18I GGWCC 4 cut(s) 68, 343, 536, 801
BmeT110I CYCGRG 1 cut(s) 973
BmgT120I GGNCC 8 cut(s) 68, 343, 536, 641, 801, 886, 887, 1156
BmiI GGNNCC 6 cut(s) 243, 345, 537, 802, 820, 888
BmrFI CCNGG 4 cut(s) 72, 77, 459, 533
BmsI GCATC 3 cut(s) 220, 486, 1041
BoxI GACNNNNGTC 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 509
BpmI CTGGAG 2 cut(s) 256, 385
Bpu10I CCTNAGC 1 cut(s) 361
BpuEI CTTGAG 2 cut(s) 668, 1126
BpuMI CCSGG 2 cut(s) 459, 533
Bsa29I ATCGAT 1 cut(s) 127
BsaJI CCNNGG 6 cut(s) 64, 313, 457, 532, 910, 1047
BsaWI WCCGGW 1 cut(s) 898
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 6 cut(s) 59, 138, 251, 512, 791, 915
Bse118I RCCGGY 4 cut(s) 138, 491, 844, 898
Bse1I ACTGG 2 cut(s) 273, 796
Bse3DI GCAATG 2 cut(s) 256, 1089
BseBI CCWGG 2 cut(s) 72, 77
BseCI ATCGAT 1 cut(s) 127
BseDI CCNNGG 6 cut(s) 64, 313, 457, 532, 910, 1047
BseGI GGATG 2 cut(s) 477, 905
BseLI CCNNNNNNNGG 6 cut(s) 59, 138, 251, 512, 791, 915
BseMI GCAATG 2 cut(s) 256, 1089
BseMII CTCAG 3 cut(s) 209, 344, 948
BseNI ACTGG 2 cut(s) 273, 796
BseRI GAGGAG 2 cut(s) 54, 259
BseSI GKGCMC 1 cut(s) 890
BseYI CCCAGC 1 cut(s) 599
BsgI GTGCAG 1 cut(s) 1153
Bsh1285I CGRYCG 1 cut(s) 127
BshTI ACCGGT 1 cut(s) 898
BshVI ATCGAT 1 cut(s) 127
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 1125
BsiHKCI CYCGRG 1 cut(s) 973
BsiSI CCGG 6 cut(s) 139, 459, 492, 532, 845, 899
BslFI GGGAC 6 cut(s) 329, 440, 549, 595, 814, 923
BslI CCNNNNNNNGG 6 cut(s) 59, 138, 251, 512, 791, 915
BsmAI GTCTC 1 cut(s) 628
BsmFI GGGAC 6 cut(s) 329, 440, 549, 595, 814, 923
BsmI GAATGC 1 cut(s) 776
BsoBI CYCGRG 1 cut(s) 973
Bsp120I GGGCCC 1 cut(s) 886
Bsp1286I GDGCHC 3 cut(s) 158, 890, 1125
Bsp143I GATC 7 cut(s) 124, 128, 144, 180, 626, 663, 698
Bsp19I CCATGG 1 cut(s) 1047
BspACI CCGC 3 cut(s) 375, 506, 915
BspCNI CTCAG 3 cut(s) 208, 343, 947
BspDI ATCGAT 1 cut(s) 127
BspLI GGNNCC 6 cut(s) 243, 345, 537, 802, 820, 888
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 3 cut(s) 123, 634, 671
BsrDI GCAATG 2 cut(s) 256, 1089
BsrFI RCCGGY 4 cut(s) 138, 491, 844, 898
BsrI ACTGG 2 cut(s) 273, 796
BssAI RCCGGY 4 cut(s) 138, 491, 844, 898
BssECI CCNNGG 6 cut(s) 64, 313, 457, 532, 910, 1047
BssMI GATC 7 cut(s) 124, 128, 144, 180, 626, 663, 698
BssT1I CCWWGG 4 cut(s) 64, 313, 910, 1047
Bst2UI CCWGG 2 cut(s) 72, 77
Bst4CI ACNGT 2 cut(s) 395, 823
BstAPI GCANNNNNTGC 2 cut(s) 255, 372
BstC8I GCNNGC 4 cut(s) 61, 140, 338, 1168
BstDEI CTNAG 6 cut(s) 177, 195, 330, 361, 934, 1173
BstDSI CCRYGG 1 cut(s) 1047
BstF5I GGATG 2 cut(s) 477, 905
BstKTI GATC 7 cut(s) 127, 131, 147, 183, 629, 666, 701
BstMAI GTCTC 1 cut(s) 628
BstMBI GATC 7 cut(s) 124, 128, 144, 180, 626, 663, 698
BstMCI CGRYCG 1 cut(s) 127
BstNI CCWGG 2 cut(s) 72, 77
BstNSI RCATGY 2 cut(s) 930, 1041
BstPAI GACNNNNGTC 1 cut(s) 541
BstSCI CCNGG 4 cut(s) 70, 75, 457, 531
BstSLI GKGCMC 1 cut(s) 890
BstV2I GAAGAC 1 cut(s) 509
BstXI CCANNNNNNTGG 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 127
BsuTUI ATCGAT 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 1047
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 477, 905
BtsI GCAGTG 2 cut(s) 677, 989
BtsIMutI CAGTG 5 cut(s) 280, 338, 677, 789, 989
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 4 cut(s) 61, 140, 338, 1168
CaiI CAGNNNCTG 2 cut(s) 89, 372
Cfr10I RCCGGY 4 cut(s) 138, 491, 844, 898
Cfr13I GGNCC 8 cut(s) 68, 343, 536, 641, 801, 886, 887, 1156
ClaI ATCGAT 1 cut(s) 127
Csp6I GTAC 2 cut(s) 670, 1079
CspAI ACCGGT 1 cut(s) 898
CspCI CAANNNNNGTGG 2 cut(s) 148, 183
CviQI GTAC 2 cut(s) 670, 1079
DdeI CTNAG 6 cut(s) 177, 195, 330, 361, 934, 1173
DpnI GATC 7 cut(s) 126, 130, 146, 182, 628, 665, 700
DpnII GATC 7 cut(s) 124, 128, 144, 180, 626, 663, 698
DraIII CACNNNGTG 1 cut(s) 1120
EaeI YGGCCR 2 cut(s) 136, 529
EciI GGCGGA 1 cut(s) 495
Eco130I CCWWGG 4 cut(s) 64, 313, 910, 1047
Eco147I AGGCCT 1 cut(s) 1166
Eco24I GRGCYC 2 cut(s) 158, 890
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 4 cut(s) 68, 343, 536, 801
Eco57I CTGAAG 1 cut(s) 66
Eco88I CYCGRG 1 cut(s) 973
EcoO109I RGGNCCY 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 70, 75
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 4 cut(s) 64, 313, 910, 1047
EcoT38I GRGCYC 2 cut(s) 158, 890
ErhI CCWWGG 4 cut(s) 64, 313, 910, 1047
FaqI GGGAC 6 cut(s) 329, 440, 549, 595, 814, 923
FauI CCCGC 1 cut(s) 908
FokI GGATG 2 cut(s) 464, 892
FriOI GRGCYC 2 cut(s) 158, 890
FspBI CTAG 5 cut(s) 222, 440, 693, 911, 1043
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 2 cut(s) 256, 385
HapII CCGG 6 cut(s) 139, 459, 492, 532, 845, 899
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 449, 812
HpaII CCGG 6 cut(s) 139, 459, 492, 532, 845, 899
HphI GGTGA 3 cut(s) 427, 913, 1050
Hpy166II GTNNAC 4 cut(s) 217, 672, 718, 828
Hpy188I TCNGA 6 cut(s) 15, 124, 153, 198, 863, 875
Hpy188III TCNNGA 4 cut(s) 481, 624, 685, 816
Hpy8I GTNNAC 4 cut(s) 217, 672, 718, 828
Hpy99I CGWCG 1 cut(s) 105
HpyAV CCTTC 5 cut(s) 20, 166, 442, 478, 870
HpyCH4III ACNGT 2 cut(s) 395, 823
HpyCH4IV ACGT 2 cut(s) 962, 984
HpyCH4V TGCA 8 cut(s) 59, 249, 336, 477, 728, 841, 1102, 1170
HpyF3I CTNAG 6 cut(s) 177, 195, 330, 361, 934, 1173
HpySE526I ACGT 2 cut(s) 962, 984
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
Kzo9I GATC 7 cut(s) 124, 128, 144, 180, 626, 663, 698
LmnI GCTCC 4 cut(s) 272, 374, 404, 503
LweI GCATC 3 cut(s) 220, 486, 1041
MaeI CTAG 5 cut(s) 222, 440, 693, 911, 1043
MaeII ACGT 2 cut(s) 962, 984
MaeIII GTNAC 3 cut(s) 543, 901, 985
MalI GATC 7 cut(s) 126, 130, 146, 182, 628, 665, 700
MboI GATC 7 cut(s) 124, 128, 144, 180, 626, 663, 698
MboII GAAGA 2 cut(s) 509, 708
MhlI GDGCHC 3 cut(s) 158, 890, 1125
MluCI AATT 3 cut(s) 729, 747, 1066
MlyI GAGTC 1 cut(s) 443
MroNI GCCGGC 1 cut(s) 138
MseI TTAA 2 cut(s) 282, 722
MslI CAYNNNNRTG 2 cut(s) 983, 1130
MspA1I CMGCKG 1 cut(s) 1025
MspI CCGG 6 cut(s) 139, 459, 492, 532, 845, 899
MspR9I CCNGG 4 cut(s) 72, 77, 459, 533
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 2 cut(s) 72, 77
NaeI GCCGGC 1 cut(s) 140
NciI CCSGG 2 cut(s) 459, 533
NcoI CCATGG 1 cut(s) 1047
NdeII GATC 7 cut(s) 124, 128, 144, 180, 626, 663, 698
NgoMIV GCCGGC 1 cut(s) 138
NlaIV GGNNCC 6 cut(s) 243, 345, 537, 802, 820, 888
NmuCI GTSAC 3 cut(s) 543, 901, 985
NspI RCATGY 2 cut(s) 930, 1041
PceI AGGCCT 1 cut(s) 1166
PciI ACATGT 1 cut(s) 1037
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PctI GAATGC 1 cut(s) 776
PdiI GCCGGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 812
PflFI GACNNNGTC 1 cut(s) 452
PflMI CCANNNNNTGG 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 898
Ple19I CGATCG 1 cut(s) 127
PleI GAGTC 1 cut(s) 443
PpsI GAGTC 1 cut(s) 443
PpuMI RGGWCCY 1 cut(s) 343
PscI ACATGT 1 cut(s) 1037
PshAI GACNNNNGTC 1 cut(s) 541
Psp1406I AACGTT 1 cut(s) 962
Psp5II RGGWCCY 1 cut(s) 343
Psp6I CCWGG 2 cut(s) 70, 75
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 2 cut(s) 70, 75
PspN4I GGNNCC 6 cut(s) 243, 345, 537, 802, 820, 888
PspOMI GGGCCC 1 cut(s) 886
PspPI GGNCC 8 cut(s) 68, 343, 536, 641, 801, 886, 887, 1156
PspPPI RGGWCCY 1 cut(s) 343
PstNI CAGNNNCTG 2 cut(s) 89, 372
PsyI GACNNNGTC 1 cut(s) 452
PvuI CGATCG 1 cut(s) 127
PvuII CAGCTG 1 cut(s) 1025
RsaI GTAC 2 cut(s) 671, 1080
RsaNI GTAC 2 cut(s) 670, 1079
RseI CAYNNNNRTG 2 cut(s) 983, 1130
SaqAI TTAA 2 cut(s) 282, 722
Sau3AI GATC 7 cut(s) 124, 128, 144, 180, 626, 663, 698
Sau96I GGNCC 8 cut(s) 68, 343, 536, 641, 801, 886, 887, 1156
SchI GAGTC 1 cut(s) 443
ScrFI CCNGG 4 cut(s) 72, 77, 459, 533
SduI GDGCHC 3 cut(s) 158, 890, 1125
SfaNI GCATC 3 cut(s) 220, 486, 1041
SfiI GGCCNNNNNGGCC 1 cut(s) 1163
SinI GGWCC 4 cut(s) 68, 343, 536, 801
SmiMI CAYNNNNRTG 2 cut(s) 983, 1130
SmlI CTYRAG 2 cut(s) 683, 1141
SmoI CTYRAG 2 cut(s) 683, 1141
Sse9I AATT 3 cut(s) 729, 747, 1066
SseBI AGGCCT 1 cut(s) 1166
SsiI CCGC 3 cut(s) 375, 506, 915
SspMI CTAG 5 cut(s) 222, 440, 693, 911, 1043
StuI AGGCCT 1 cut(s) 1166
StyD4I CCNGG 4 cut(s) 70, 75, 457, 531
StyI CCWWGG 4 cut(s) 64, 313, 910, 1047
TaaI ACNGT 2 cut(s) 395, 823
TaiI ACGT 2 cut(s) 965, 987
TaqI TCGA 3 cut(s) 127, 832, 921
TasI AATT 3 cut(s) 729, 747, 1066
TatI WGTACW 1 cut(s) 669
TfiI GAWTC 1 cut(s) 812
Tru1I TTAA 2 cut(s) 282, 722
Tru9I TTAA 2 cut(s) 282, 722
TscAI CASTG 5 cut(s) 280, 338, 684, 796, 996
TseFI GTSAC 3 cut(s) 543, 901, 985
Tsp45I GTSAC 3 cut(s) 543, 901, 985
TspDTI ATGAA 2 cut(s) 955, 995
TspGWI ACGGA 2 cut(s) 442, 490
TspRI CASTG 5 cut(s) 280, 338, 684, 796, 996
Tth111I GACNNNGTC 1 cut(s) 452
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 4 cut(s) 68, 343, 536, 801
XceI RCATGY 2 cut(s) 930, 1041
XcmI CCANNNNNNNNNTGG 1 cut(s) 1022
XmaJI CCTAGG 1 cut(s) 910
XspI CTAG 5 cut(s) 222, 440, 693, 911, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.