Rh1CG069600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013985
Physical Location & Seq
Forward (+)
14376258 .. 14379377
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG069600.1

Sequence Viewer

Length: 1101 bp
ATGGCATCTCTCTCCTACCTCTTCTCACTCTCCTTCCTCTGCTTCTCCTTAGCTGCCCAAGCCCTCAACAACCCAGACCCCAAATGCAGCGCCACCAACGACCACGGCTCTAACCTCCAAGTCTTCCATTTCTACAGTCCATGCTCCCCCTTCGGATCCGCAAAGTACGCACGTCCTCCTCCCTGGGAGGAGTACGTGCTCCAAACGCTGGCCAAGGACCAGGCCAGGCTCCAATTCTTGGCCAGCCTCGCCGGGGTTAAGAAATCTATCGTCCCCATTGCGTCCGGACGACAGATCATTCAGAGCCCCACGTACATTGTGAGGGCCAATATTGGGACTCCACCTCAGACTTTGCTCATGGCTGTGGACACCAGCAGTGATGCTGCTTGGGTTCCTTGCAGTGGCTGCGTTGGCTGCTCTTCCAATGTCTTTAACTCTCTCAAATCCACCACCTTCAAGTCCATTGGTTGTGGAGCACCTCAGTGCAAGCAGGCACCCAACCCCAGCTGTCTTGGAAGCACCTGCAGCTTCAACGTTACCTATGGAGGTTCCACCATTGCATCAAACCTGTCACAAGAAACCTTCACCCTAGCCAACGATGCCTTACCTGCCTACACCTTTGGTTGCATCCAAAAAACCACCGGCAGCTCAGTGCCGCCGCAGGGTCTTCTGGGTCTTGGCCGAGGGCCGTTGTCGCTTCTGTCCCAGACACAAAACCTCTACAAATCCACATTCTCATACTGCCTCCCTGGCTACAAGTCACTGAACTTCTCTGGGTCACTGAGGCTTGGAACTGTTGGGCAGCCCATTAGGATCAAGTACACCCCATTGCTCAAGAACCCTAGGAGGTCATCACTCTATTATGTGAACTTAAATGCAATTAGGGTTGGAAGGAGAATTGTTGATATCCCCCCAGCAGCTTTGGCTTTCAATCCCACCACTGGTGCAGGGACAGTCATTGATTCTGGTAATTTTTATCCAACACTTACTGATCTAATCAATTTGCTCTGTTTTTTAATTGAAAAGAATTTTTTTGATATAATGATTCTTGGATCCTTGTTGATCTTATTGTCTATATCAATCACATGTACGTTGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

366

Amino Acids

39.2

Weight (kDa)

9.1

Isoelectric Point (pI)

39.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 105 - 264 8.1e-37 Xylanase inhibitor N-terminal
Asp PF00026 105 - 235 2.8e-09 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54400 AT5G07030
fragaria_vesca FvH4_7g03340
malus_domestica MD02G1283800.v1.1 MD07G1049400.v1.1
prunus_persica Prupe.2G038800_v2.0.a1
pyrus_communis pycom02g24180 pycom07g03560
rosa_chinensis RchiOBHm_Chr1g0325651
rosa_laevigata RLG00000030113
rosa_roxburghii Rroxscaffold_4G00324550
rosa_rugosa Rorug01G0053600
rosa_samantha Rh1AG069200 Rh1BG056600 Rh1CG069600 Rh1DG074200
rosa_wichuraiana Rw1G005720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 530
Acc36I ACCTGC 2 cut(s) 530, 616
AccB1I GGYRCC 1 cut(s) 493
AccB7I CCANNNNNTGG 2 cut(s) 208, 238
AccIII TCCGGA 1 cut(s) 284
AciI CCGC 3 cut(s) 159, 656, 659
AclI AACGTT 1 cut(s) 534
AclWI GGATC 5 cut(s) 150, 163, 821, 1047, 1060
AcoI YGGCCR 3 cut(s) 210, 240, 679
AcsI RAATTY 1 cut(s) 1027
AfaI GTAC 5 cut(s) 167, 194, 314, 821, 1090
AfiI CCNNNNNNNGG 7 cut(s) 208, 238, 253, 333, 401, 662, 941
AflIII ACRYGT 1 cut(s) 1085
AgsI TTSAA 4 cut(s) 457, 532, 931, 1022
AjiI CACGTC 1 cut(s) 173
AjnI CCWGG 4 cut(s) 182, 219, 224, 748
AleI CACNNNNGTG 1 cut(s) 481
AluBI AGCT 5 cut(s) 53, 507, 528, 648, 920
AluI AGCT 5 cut(s) 53, 507, 528, 648, 920
Alw21I GWGCWC 2 cut(s) 201, 478
AlwI GGATC 5 cut(s) 150, 163, 821, 1047, 1060
AlwNI CAGNNNCTG 1 cut(s) 405
Aor13HI TCCGGA 1 cut(s) 284
AoxI GGCC 6 cut(s) 210, 222, 240, 324, 679, 686
ApeKI GCWGC 9 cut(s) 53, 87, 383, 405, 414, 525, 645, 802, 917
ApoI RAATTY 1 cut(s) 1027
AspA2I CCTAGG 1 cut(s) 842
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 217, 324, 686
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 577
AvaII GGWCC 1 cut(s) 217
AvrII CCTAGG 1 cut(s) 842
BalI TGGCCA 2 cut(s) 212, 242
BamHI GGATCC 2 cut(s) 155, 1052
BanI GGYRCC 1 cut(s) 493
BanII GRGCYC 1 cut(s) 308
BbsI GAAGAC 2 cut(s) 115, 659
Bbv12I GWGCWC 2 cut(s) 201, 478
BbvI GCAGC 9 cut(s) 40, 99, 370, 392, 401, 537, 657, 814, 929
BceAI ACGGC 2 cut(s) 121, 673
BciT130I CCWGG 4 cut(s) 184, 221, 226, 750
BcnI CCSGG 1 cut(s) 253
BfaI CTAG 2 cut(s) 590, 843
BfmI CTRYAG 2 cut(s) 133, 523
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 2 cut(s) 530, 616
BglI GCCNNNNNGGC 1 cut(s) 750
BlnI CCTAGG 1 cut(s) 842
Bme1390I CCNGG 5 cut(s) 184, 221, 226, 253, 750
Bme18I GGWCC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 173
BmgT120I GGNCC 3 cut(s) 217, 324, 686
BmiI GGNNCC 6 cut(s) 157, 230, 393, 495, 550, 1054
BmrFI CCNGG 5 cut(s) 184, 221, 226, 253, 750
BmsI GCATC 5 cut(s) 14, 370, 569, 589, 636
BpiI GAAGAC 2 cut(s) 115, 659
Bpu10I CCTNAGC 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 253
BsaAI YACGTR 2 cut(s) 196, 312
BsaJI CCNNGG 8 cut(s) 103, 182, 183, 213, 252, 682, 748, 842
BsaWI WCCGGW 1 cut(s) 284
Bsc4I CCNNNNNNNGG 7 cut(s) 208, 238, 253, 333, 401, 662, 941
Bse118I RCCGGY 1 cut(s) 641
Bse1I ACTGG 1 cut(s) 946
Bse3DI GCAATG 3 cut(s) 276, 555, 827
BseAI TCCGGA 1 cut(s) 284
BseBI CCWGG 4 cut(s) 184, 221, 226, 750
BseDI CCNNGG 8 cut(s) 103, 182, 183, 213, 252, 682, 748, 842
BseGI GGATG 1 cut(s) 627
BseLI CCNNNNNNNGG 7 cut(s) 208, 238, 253, 333, 401, 662, 941
BseMI GCAATG 3 cut(s) 276, 555, 827
BseMII CTCAG 4 cut(s) 359, 494, 663, 773
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 2 cut(s) 168, 203
BseXI GCAGC 9 cut(s) 40, 99, 370, 392, 401, 537, 657, 814, 929
BseYI CCCAGC 2 cut(s) 503, 913
BsgI GTGCAG 1 cut(s) 966
BshFI GGCC 6 cut(s) 212, 224, 242, 326, 681, 688
BshNI GGYRCC 1 cut(s) 493
BsiHKAI GWGCWC 2 cut(s) 201, 478
BsiSI CCGG 3 cut(s) 252, 285, 642
BslFI GGGAC 4 cut(s) 257, 349, 688, 964
BslI CCNNNNNNNGG 7 cut(s) 208, 238, 253, 333, 401, 662, 941
BsmFI GGGAC 4 cut(s) 257, 349, 688, 964
BsnI GGCC 6 cut(s) 212, 224, 242, 326, 681, 688
Bsp1286I GDGCHC 3 cut(s) 201, 308, 478
Bsp13I TCCGGA 1 cut(s) 284
Bsp143I GATC 6 cut(s) 155, 294, 813, 991, 1052, 1062
BspACI CCGC 3 cut(s) 159, 656, 659
BspANI GGCC 6 cut(s) 212, 224, 242, 326, 681, 688
BspCNI CTCAG 4 cut(s) 358, 493, 662, 774
BspEI TCCGGA 1 cut(s) 284
BspLI GGNNCC 6 cut(s) 157, 230, 393, 495, 550, 1054
BspMAI CTGCAG 1 cut(s) 527
BspMI ACCTGC 2 cut(s) 530, 616
BspPI GGATC 5 cut(s) 150, 163, 821, 1047, 1060
BspQI GCTCTTC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 493
BsrDI GCAATG 3 cut(s) 276, 555, 827
BsrFI RCCGGY 1 cut(s) 641
BsrI ACTGG 1 cut(s) 946
BssAI RCCGGY 1 cut(s) 641
BssECI CCNNGG 8 cut(s) 103, 182, 183, 213, 252, 682, 748, 842
BssMI GATC 6 cut(s) 155, 294, 813, 991, 1052, 1062
BssT1I CCWWGG 2 cut(s) 213, 842
Bst2UI CCWGG 4 cut(s) 184, 221, 226, 750
Bst4CI ACNGT 3 cut(s) 137, 796, 955
Bst6I CTCTTC 2 cut(s) 26, 424
BstAPI GCANNNNNTGC 1 cut(s) 405
BstBAI YACGTR 2 cut(s) 196, 312
BstC8I GCNNGC 4 cut(s) 210, 244, 488, 492
BstDEI CTNAG 5 cut(s) 49, 345, 480, 649, 782
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 627
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 6 cut(s) 158, 297, 816, 994, 1055, 1065
BstMBI GATC 6 cut(s) 155, 294, 813, 991, 1052, 1062
BstNI CCWGG 4 cut(s) 184, 221, 226, 750
BstNSI RCATGY 1 cut(s) 1089
BstSCI CCNGG 5 cut(s) 182, 219, 224, 251, 748
BstSFI CTRYAG 2 cut(s) 133, 523
BstV1I GCAGC 9 cut(s) 40, 99, 370, 392, 401, 537, 657, 814, 929
BstV2I GAAGAC 2 cut(s) 115, 659
BstX2I RGATCY 2 cut(s) 155, 1052
BstYI RGATCY 2 cut(s) 155, 1052
BsuRI GGCC 6 cut(s) 212, 224, 242, 326, 681, 688
BtgI CCRYGG 1 cut(s) 103
BtrI CACGTC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 627
BtsI GCAGTG 2 cut(s) 382, 406
BtsIMutI CAGTG 7 cut(s) 382, 406, 488, 657, 761, 779, 939
BveI ACCTGC 2 cut(s) 530, 616
Cac8I GCNNGC 4 cut(s) 210, 244, 488, 492
CaiI CAGNNNCTG 1 cut(s) 405
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 641
Cfr13I GGNCC 3 cut(s) 217, 324, 686
CseI GACGC 1 cut(s) 270
Csp6I GTAC 5 cut(s) 166, 193, 313, 820, 1089
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 3 cut(s) 141, 358, 1086
CviQI GTAC 5 cut(s) 166, 193, 313, 820, 1089
DdeI CTNAG 5 cut(s) 49, 345, 480, 649, 782
DpnI GATC 6 cut(s) 157, 296, 815, 993, 1054, 1064
DpnII GATC 6 cut(s) 155, 294, 813, 991, 1052, 1062
EaeI YGGCCR 3 cut(s) 210, 240, 679
Eam1104I CTCTTC 2 cut(s) 26, 424
EarI CTCTTC 2 cut(s) 26, 424
Eco130I CCWWGG 2 cut(s) 213, 842
Eco24I GRGCYC 1 cut(s) 308
Eco32I GATATC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 217
EcoRII CCWGG 4 cut(s) 182, 219, 224, 748
EcoRV GATATC 1 cut(s) 907
EcoT14I CCWWGG 2 cut(s) 213, 842
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 2 cut(s) 213, 842
FaeI CATG 3 cut(s) 144, 361, 1089
FaiI YATR 8 cut(s) 142, 359, 543, 739, 864, 1040, 1076, 1087
FaqI GGGAC 4 cut(s) 257, 349, 688, 964
FatI CATG 3 cut(s) 140, 357, 1085
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 1 cut(s) 308
FspBI CTAG 2 cut(s) 590, 843
GlaI GCGC 1 cut(s) 91
GsaI CCCAGC 2 cut(s) 507, 917
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 6 cut(s) 212, 224, 242, 326, 681, 688
HapII CCGG 3 cut(s) 252, 285, 642
HgaI GACGC 1 cut(s) 270
HhaI GCGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 144, 361, 1089
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HinfI GANTC 3 cut(s) 337, 962, 1045
HpaII CCGG 3 cut(s) 252, 285, 642
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 3 cut(s) 367, 822, 868
Hpy188I TCNGA 3 cut(s) 155, 303, 348
Hpy188III TCNNGA 2 cut(s) 285, 835
Hpy8I GTNNAC 3 cut(s) 367, 822, 868
HpyAV CCTTC 5 cut(s) 43, 160, 463, 592, 885
HpyCH4III ACNGT 3 cut(s) 137, 796, 955
HpyCH4IV ACGT 5 cut(s) 172, 195, 311, 534, 1091
HpyCH4V TGCA 8 cut(s) 87, 399, 486, 525, 560, 627, 878, 947
HpyF3I CTNAG 5 cut(s) 49, 345, 480, 649, 782
HpySE526I ACGT 5 cut(s) 172, 195, 311, 534, 1091
Hsp92II CATG 3 cut(s) 144, 361, 1089
HspAI GCGC 1 cut(s) 90
Kpn2I TCCGGA 1 cut(s) 284
Kzo9I GATC 6 cut(s) 155, 294, 813, 991, 1052, 1062
LguI GCTCTTC 1 cut(s) 424
LmnI GCTCC 4 cut(s) 149, 204, 234, 473
Lsp1109I GCAGC 9 cut(s) 40, 99, 370, 392, 401, 537, 657, 814, 929
LweI GCATC 5 cut(s) 14, 370, 569, 589, 636
MaeI CTAG 2 cut(s) 590, 843
MaeII ACGT 5 cut(s) 172, 195, 311, 534, 1091
MaeIII GTNAC 4 cut(s) 535, 570, 759, 777
MalI GATC 6 cut(s) 157, 296, 815, 993, 1054, 1064
MboI GATC 6 cut(s) 155, 294, 813, 991, 1052, 1062
MboII GAAGA 4 cut(s) 13, 115, 411, 659
MflI RGATCY 2 cut(s) 155, 1052
MhlI GDGCHC 3 cut(s) 201, 308, 478
MlsI TGGCCA 2 cut(s) 212, 242
MluCI AATT 7 cut(s) 233, 879, 897, 970, 1000, 1017, 1027
MluNI TGGCCA 2 cut(s) 212, 242
MlyI GAGTC 1 cut(s) 331
MmeI TCCRAC 2 cut(s) 868, 1004
Mox20I TGGCCA 2 cut(s) 212, 242
MroI TCCGGA 1 cut(s) 284
MscI TGGCCA 2 cut(s) 212, 242
MseI TTAA 4 cut(s) 258, 432, 872, 1016
MslI CAYNNNNRTG 2 cut(s) 362, 481
Msp20I TGGCCA 2 cut(s) 212, 242
MspA1I CMGCKG 1 cut(s) 507
MspI CCGG 3 cut(s) 252, 285, 642
MspR9I CCNGG 5 cut(s) 184, 221, 226, 253, 750
MvaI CCWGG 4 cut(s) 184, 221, 226, 750
NciI CCSGG 1 cut(s) 253
NdeII GATC 6 cut(s) 155, 294, 813, 991, 1052, 1062
NlaIII CATG 3 cut(s) 144, 361, 1089
NlaIV GGNNCC 6 cut(s) 157, 230, 393, 495, 550, 1054
NmeAIII GCCGAG 1 cut(s) 707
NmuCI GTSAC 3 cut(s) 570, 759, 777
NspI RCATGY 1 cut(s) 1089
OliI CACNNNNGTG 1 cut(s) 481
PaqCI CACCTGC 1 cut(s) 530
PasI CCCWGGG 1 cut(s) 183
PciI ACATGT 1 cut(s) 1085
PciSI GCTCTTC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 962, 1045
PflMI CCANNNNNTGG 2 cut(s) 208, 238
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 2 cut(s) 196, 312
PscI ACATGT 1 cut(s) 1085
Psp1406I AACGTT 1 cut(s) 534
Psp6I CCWGG 4 cut(s) 182, 219, 224, 748
PspFI CCCAGC 2 cut(s) 503, 913
PspGI CCWGG 4 cut(s) 182, 219, 224, 748
PspN4I GGNNCC 6 cut(s) 157, 230, 393, 495, 550, 1054
PspPI GGNCC 3 cut(s) 217, 324, 686
PstI CTGCAG 1 cut(s) 527
PstNI CAGNNNCTG 1 cut(s) 405
PsuI RGATCY 2 cut(s) 155, 1052
PvuII CAGCTG 1 cut(s) 507
RsaI GTAC 5 cut(s) 167, 194, 314, 821, 1090
RsaNI GTAC 5 cut(s) 166, 193, 313, 820, 1089
RseI CAYNNNNRTG 2 cut(s) 362, 481
SapI GCTCTTC 1 cut(s) 424
SaqAI TTAA 4 cut(s) 258, 432, 872, 1016
Sau3AI GATC 6 cut(s) 155, 294, 813, 991, 1052, 1062
Sau96I GGNCC 3 cut(s) 217, 324, 686
SchI GAGTC 1 cut(s) 331
ScrFI CCNGG 5 cut(s) 184, 221, 226, 253, 750
SduI GDGCHC 3 cut(s) 201, 308, 478
SfaNI GCATC 5 cut(s) 14, 370, 569, 589, 636
SfcI CTRYAG 2 cut(s) 133, 523
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 2 cut(s) 362, 481
SmlI CTYRAG 1 cut(s) 833
SmoI CTYRAG 1 cut(s) 833
Sse9I AATT 7 cut(s) 233, 879, 897, 970, 1000, 1017, 1027
SsiI CCGC 3 cut(s) 159, 656, 659
SspI AATATT 1 cut(s) 331
SspMI CTAG 2 cut(s) 590, 843
StyD4I CCNGG 5 cut(s) 182, 219, 224, 251, 748
StyI CCWWGG 2 cut(s) 213, 842
TaaI ACNGT 3 cut(s) 137, 796, 955
TaiI ACGT 5 cut(s) 175, 198, 314, 537, 1094
TasI AATT 7 cut(s) 233, 879, 897, 970, 1000, 1017, 1027
TatI WGTACW 1 cut(s) 819
TauI GCSGC 2 cut(s) 658, 661
TfiI GAWTC 2 cut(s) 962, 1045
Tru1I TTAA 4 cut(s) 258, 432, 872, 1016
Tru9I TTAA 4 cut(s) 258, 432, 872, 1016
TscAI CASTG 7 cut(s) 382, 406, 488, 657, 768, 786, 946
TseFI GTSAC 3 cut(s) 570, 759, 777
TseI GCWGC 9 cut(s) 53, 87, 383, 405, 414, 525, 645, 802, 917
Tsp45I GTSAC 3 cut(s) 570, 759, 777
TspRI CASTG 7 cut(s) 382, 406, 488, 657, 768, 786, 946
Van91I CCANNNNNTGG 2 cut(s) 208, 238
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 1027
XceI RCATGY 1 cut(s) 1089
XmaJI CCTAGG 1 cut(s) 842
XspI CTAG 2 cut(s) 590, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.