Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013985

Physical Location & Seq

Genomic Coordinates Forward (+)

8822500 .. 8823228

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0053600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGATAATCGAGCCTATGCGCTCGAAATGGCTAAGCTGCTTGACCCTGGAAATCAAATCTTTGGTGGTAGAGTCATATCGCGTAGTGATAGCACAGAAACAGATCGAAAGGGTTTAGATATCCTGCTTGCCCGAGATTCTGCTGTTGTGATCCTTGATGATACGAAAGATGTATGGGCTACTGGCAACCAGAAAAATGTAATAGTAATACCAAGATACCATTTCTTTAGGTCTAGTTGTCAAAAGTTTGGCCTCAGTAATGGTAAGCCTTATTCTGAGTTGAAGACCGATGAATGTGATCGGTTTGGAGGAGTTTACCTTGCAAATGTACTCCAACTTCTTAAGCATATTCACACCATATTCTTTAATGAAGTTGAGTTACAGGGGTGGGATCTTATCGATAGAGATGTGAGGCTTGTGTTGAAAATCCTAAAGAAGGAAGTCTTGAAGGGCTGTAAAATTGTTTTCAGCCATGTCTTCCCCTCAAATGTCCAAGATGATACTCATCCTTTGTGGAAGATGGCGGAGCAGTTAGGCGCTACTTGTTCAACACAAGTCGATCCATCAGTCACACATGTGGTTGCAGCCAATGCCCGAACACAGAAATCGTGTTGGGCAGTCAAAGAAGGAAAGTTTCTGGTGAATCCCCAGTGGATTCATACTGCAAACTTTATGTGGCAAAAACAACCTGAAGATAATTTCCTGTCATTAGTTCATTACCAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

242

Amino Acids

27.62

Weight (kDa)

7.69

Isoelectric Point (pI)

31.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	3 - 75	4.8e-07	NLI interacting factor-like phosphatase
BRCT	PF00533	147 - 219	7.3e-10	BRCA1 C Terminus (BRCT) domain
PTCB-BRCT	PF12738	165 - 218	4.9e-07	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54400 AT5G07030
fragaria_vesca	FvH4_7g03340
malus_domestica	MD02G1283800.v1.1 MD07G1049400.v1.1
prunus_persica	Prupe.2G038800_v2.0.a1
pyrus_communis	pycom02g24180 pycom07g03560
rosa_chinensis	RchiOBHm_Chr1g0325651
rosa_laevigata	RLG00000030113
rosa_roxburghii	Rroxscaffold_4G00324550
rosa_rugosa	Rorug01G0053600
rosa_samantha	Rh1AG069200 Rh1BG056600 Rh1CG069600 Rh1DG074200
rosa_wichuraiana	Rw1G005720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	524
AclWI	GGATC	3 cut(s)	145, 399, 554
AcuI	CTGAAG	1 cut(s)	711
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	4 cut(s)	283, 424, 448, 549
AjnI	CCWGG	1 cut(s)	46
AleI	CACNNNNGTG	1 cut(s)	575
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
AlwI	GGATC	3 cut(s)	145, 399, 554
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	37, 584
AspLEI	GCGC	2 cut(s)	22, 539
AsuHPI	GGTGA	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	132
BarI	GAAGNNNNNNTAC	4 cut(s)	321, 353, 363, 395
BbsI	GAAGAC	2 cut(s)	290, 469
BbvI	GCAGC	2 cut(s)	24, 596
BccI	CCATC	2 cut(s)	514, 571
BciT130I	CCWGG	1 cut(s)	48
BfaI	CTAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	540
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	2 cut(s)	38, 585
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	2 cut(s)	39, 586
Bme1390I	CCNGG	1 cut(s)	48
BmeT110I	CYCGRG	1 cut(s)	132
BmrFI	CCNGG	1 cut(s)	48
BmrI	ACTGGG	1 cut(s)	643
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	2 cut(s)	290, 469
Bpu1102I	GCTNAGC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	399
BsaBI	GATNNNNATC	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	2 cut(s)	187, 649
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	48
BseCI	ATCGAT	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	505
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	2 cut(s)	267, 268
BseNI	ACTGG	2 cut(s)	187, 649
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	2 cut(s)	24, 596
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	252
BshVI	ATCGAT	1 cut(s)	399
BsiHKCI	CYCGRG	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	436
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	5 cut(s)	103, 150, 298, 391, 559
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	267, 268
BspDI	ATCGAT	1 cut(s)	399
BspFNI	CGCG	1 cut(s)	82
BspPI	GGATC	3 cut(s)	145, 399, 554
BspTI	CTTAAG	1 cut(s)	341
BsrI	ACTGG	2 cut(s)	187, 649
BssECI	CCNNGG	1 cut(s)	46
BssMI	GATC	5 cut(s)	103, 150, 298, 391, 559
Bst2UI	CCWGG	1 cut(s)	48
BstAFI	CTTAAG	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	33, 254, 276
BstENI	CCTNNNNNAGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	22, 539
BstKTI	GATC	5 cut(s)	106, 153, 301, 394, 562
BstMBI	GATC	5 cut(s)	103, 150, 298, 391, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	46
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	24, 596
BstV2I	GAAGAC	2 cut(s)	290, 469
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
Bsu15I	ATCGAT	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	252
BsuTUI	ATCGAT	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	656
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	2 cut(s)	22, 539
ClaI	ATCGAT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	329
CviAII	CATG	2 cut(s)	473, 575
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	3 cut(s)	33, 254, 276
DpnI	GATC	5 cut(s)	105, 152, 300, 393, 561
DpnII	GATC	5 cut(s)	103, 150, 298, 391, 559
EciI	GGCGGA	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	711
Eco88I	CYCGRG	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	1 cut(s)	121
FaeI	CATG	2 cut(s)	476, 578
FaiI	YATR	9 cut(s)	18, 77, 175, 348, 359, 474, 576, 660, 674
FalI	AAGNNNNNCTT	2 cut(s)	428, 460
FatI	CATG	2 cut(s)	472, 574
Fnu4HI	GCNGC	2 cut(s)	38, 585
FokI	GGATG	1 cut(s)	492
Fsp4HI	GCNGC	2 cut(s)	38, 585
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	2 cut(s)	21, 538
GluI	GCNGC	2 cut(s)	38, 585
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	252
HhaI	GCGC	2 cut(s)	22, 539
Hin1II	CATG	2 cut(s)	476, 578
Hin6I	GCGC	2 cut(s)	20, 537
HinP1I	GCGC	2 cut(s)	20, 537
HinfI	GANTC	4 cut(s)	72, 137, 643, 655
HphI	GGTGA	1 cut(s)	652
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	430, 442, 620
HpyCH4V	TGCA	3 cut(s)	323, 584, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	3 cut(s)	33, 254, 276
Hsp92II	CATG	2 cut(s)	476, 578
HspAI	GCGC	2 cut(s)	20, 537
Kzo9I	GATC	5 cut(s)	103, 150, 298, 391, 559
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	2 cut(s)	24, 596
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	378, 568
MalI	GATC	5 cut(s)	105, 152, 300, 393, 561
MboI	GATC	5 cut(s)	103, 150, 298, 391, 559
MboII	GAAGA	4 cut(s)	295, 469, 529, 704
MflI	RGATCY	1 cut(s)	391
MluCI	AATT	2 cut(s)	459, 697
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	4 cut(s)	263, 302, 405, 493
MseI	TTAA	2 cut(s)	342, 366
MslI	CAYNNNNRTG	1 cut(s)	575
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	590
NdeII	GATC	5 cut(s)	103, 150, 298, 391, 559
NlaIII	CATG	2 cut(s)	476, 578
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	578
OliI	CACNNNNGTG	1 cut(s)	575
PciI	ACATGT	1 cut(s)	574
PfeI	GAWTC	3 cut(s)	137, 643, 655
PkrI	GCNGC	2 cut(s)	39, 586
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	2 cut(s)	342, 366
SatI	GCNGC	2 cut(s)	38, 585
Sau3AI	GATC	5 cut(s)	103, 150, 298, 391, 559
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	48
SetI	ASST	4 cut(s)	39, 233, 321, 691
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	459, 697
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	1 cut(s)	46
TaqI	TCGA	5 cut(s)	10, 24, 106, 399, 558
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	2 cut(s)	459, 697
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	3 cut(s)	137, 643, 655
Tru1I	TTAA	2 cut(s)	342, 366
Tru9I	TTAA	2 cut(s)	342, 366
TscAI	CASTG	1 cut(s)	656
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	2 cut(s)	37, 584
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	4 cut(s)	306, 384, 647, 704
TspRI	CASTG	1 cut(s)	656
Vha464I	CTTAAG	1 cut(s)	341
XagI	CCTNNNNNAGG	1 cut(s)	434
XceI	RCATGY	1 cut(s)	578
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.