Rh1BG056600

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0013985
Physical Location & Seq
Forward (+)
8406202 .. 8409410
3209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG056600.1

Sequence Viewer

Length: 1008 bp
ATGGCAGCTCTCTCCTACCTCTTCTCACTCTCCTTCCTCTGCTTCTCCTTAGCTGCCCAAGCCCTCAACAACCCAGACCCCAAATGCAGCGCCACCAACGACCACGGCTCTAACCTCCAAGTCTTCCATGTCTACAGTCCATGCTCCCCCTTCAGACCCGCAAAGCCACTCTCATGGGAGGAGGACGTGCTCCAAACGCTGGCCAAGGACCAGGCCAGGCTCCAGTTCTTGGCCAGCCTAGCCGGGGCTAAGAAATCTATCGTCCCCATTGCGTCCGGACGACAGATCATTCAGAGCCCCACGTACATTGTGAGGGCCAAGATTGGGACTCCACCTCAGACTTTGCTCATGGCTGTGGACACCAGCAGTGATGCTGCTTGGGTTCCTTGCAATGGCTGCGTTGGCTGCTCTTCCAATGCCTTTAACTCTCTCAAATCCACCACCTTCAAGTCCGTTGGTTGTGGAGCACCTCAGTGCAAGCAGGCACCCAACCCCAGCTGCCTCGGAAGCACCTGCAGCTTTAATGTTACCTATGGAGGTTCCACCATTGCATCAAACCTGTCACAAGAAACCTTCACCCTAGCCAACGATGCCGTACCTGCCTACACCTTTGGTTGCATCCAGAAGACCACCGGCAGCTCAGTGCCTCCGCAGGGTCTTCTGGGTCTTGGCCGAGGGCCGTTGTCGCTTCTGTCCCAGACTCAAAACCTCTACCAATCCACATTCTCATACTGCCTCCCTGGCTACAAGTCACTGAACTTCTCTGGGTCACTGAGGCTTGGAACTGTTGGGCAGCCCATTAGGATCAAGTACACCCCATTGCTCAAGAACCCTAGGAGGTCATCACTCTATTATGTCAACTTAAATGCAATTAGGGTTGGAAGGAGAATTGTTGATATCCCTCCAGCAGCTTTGGCTTTCAATCCCACCACTGGTGCAGGGACAGTCATTGATTCTGGTAATTTTTATCAAACACTTACTGACCTAATCAATTGCTCTGTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

335

Amino Acids

35.64

Weight (kDa)

9.17

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 102 - 261 5.5e-37 Xylanase inhibitor N-terminal
Asp PF00026 102 - 234 6.1e-10 Eukaryotic aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013985)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54400 AT5G07030
fragaria_vesca FvH4_7g03340
malus_domestica MD02G1283800.v1.1 MD07G1049400.v1.1
prunus_persica Prupe.2G038800_v2.0.a1
pyrus_communis pycom02g24180 pycom07g03560
rosa_chinensis RchiOBHm_Chr1g0325651
rosa_laevigata RLG00000030113
rosa_roxburghii Rroxscaffold_4G00324550
rosa_rugosa Rorug01G0053600
rosa_samantha Rh1AG069200 Rh1BG056600 Rh1CG069600 Rh1DG074200
rosa_wichuraiana Rw1G005720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 521
Acc36I ACCTGC 2 cut(s) 521, 607
AccB1I GGYRCC 1 cut(s) 484
AccB7I CCANNNNNTGG 2 cut(s) 199, 229
AccI GTMKAC 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 275
AciI CCGC 2 cut(s) 159, 650
AclWI GGATC 1 cut(s) 812
AcoI YGGCCR 3 cut(s) 201, 231, 670
AcuI CTGAAG 1 cut(s) 136
AfaI GTAC 3 cut(s) 305, 597, 812
AfiI CCNNNNNNNGG 7 cut(s) 199, 229, 244, 324, 392, 653, 932
AgsI TTSAA 2 cut(s) 448, 922
AjiI CACGTC 1 cut(s) 187
AjnI CCWGG 3 cut(s) 210, 215, 739
AleI CACNNNNGTG 1 cut(s) 472
AluBI AGCT 6 cut(s) 8, 53, 498, 519, 639, 911
AluI AGCT 6 cut(s) 8, 53, 498, 519, 639, 911
Alw21I GWGCWC 2 cut(s) 192, 469
AlwI GGATC 1 cut(s) 812
Aor13HI TCCGGA 1 cut(s) 275
AoxI GGCC 6 cut(s) 201, 213, 231, 315, 670, 677
AspA2I CCTAGG 1 cut(s) 833
AspLEI GCGC 1 cut(s) 92
AspS9I GGNCC 3 cut(s) 208, 315, 677
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 568
AvaII GGWCC 1 cut(s) 208
AvrII CCTAGG 1 cut(s) 833
BalI TGGCCA 2 cut(s) 203, 233
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 3 cut(s) 115, 632, 650
Bbv12I GWGCWC 2 cut(s) 192, 469
BceAI ACGGC 3 cut(s) 121, 578, 664
BciT130I CCWGG 3 cut(s) 212, 217, 741
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 3 cut(s) 239, 581, 834
BfmI CTRYAG 2 cut(s) 133, 514
BfoI RGCGCY 1 cut(s) 93
BfuAI ACCTGC 2 cut(s) 521, 607
BglI GCCNNNNNGGC 1 cut(s) 741
BlnI CCTAGG 1 cut(s) 833
Bme1390I CCNGG 4 cut(s) 212, 217, 244, 741
Bme18I GGWCC 1 cut(s) 208
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 3 cut(s) 208, 315, 677
BmiI GGNNCC 4 cut(s) 221, 384, 486, 541
BmrFI CCNGG 4 cut(s) 212, 217, 244, 741
BmsI GCATC 4 cut(s) 361, 560, 580, 627
BpiI GAAGAC 3 cut(s) 115, 632, 650
BpmI CTGGAG 2 cut(s) 206, 888
Bpu10I CCTNAGC 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 1 cut(s) 244
BsaAI YACGTR 1 cut(s) 303
BsaJI CCNNGG 7 cut(s) 103, 204, 243, 502, 673, 739, 833
BsaWI WCCGGW 1 cut(s) 275
Bsc4I CCNNNNNNNGG 7 cut(s) 199, 229, 244, 324, 392, 653, 932
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 2 cut(s) 223, 937
Bse3DI GCAATG 4 cut(s) 267, 397, 546, 818
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 3 cut(s) 212, 217, 741
BseDI CCNNGG 7 cut(s) 103, 204, 243, 502, 673, 739, 833
BseGI GGATG 1 cut(s) 618
BseLI CCNNNNNNNGG 7 cut(s) 199, 229, 244, 324, 392, 653, 932
BseMI GCAATG 4 cut(s) 267, 397, 546, 818
BseMII CTCAG 4 cut(s) 350, 485, 654, 764
BseNI ACTGG 2 cut(s) 223, 937
BseRI GAGGAG 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 957
BshFI GGCC 6 cut(s) 203, 215, 233, 317, 672, 679
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 2 cut(s) 192, 469
BsiSI CCGG 3 cut(s) 243, 276, 633
BslFI GGGAC 4 cut(s) 248, 340, 679, 955
BslI CCNNNNNNNGG 7 cut(s) 199, 229, 244, 324, 392, 653, 932
BsmFI GGGAC 4 cut(s) 248, 340, 679, 955
BsnI GGCC 6 cut(s) 203, 215, 233, 317, 672, 679
Bsp1286I GDGCHC 3 cut(s) 192, 299, 469
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 2 cut(s) 285, 804
BspACI CCGC 2 cut(s) 159, 650
BspANI GGCC 6 cut(s) 203, 215, 233, 317, 672, 679
BspCNI CTCAG 4 cut(s) 349, 484, 653, 765
BspEI TCCGGA 1 cut(s) 275
BspLI GGNNCC 4 cut(s) 221, 384, 486, 541
BspMAI CTGCAG 1 cut(s) 518
BspMI ACCTGC 2 cut(s) 521, 607
BspPI GGATC 1 cut(s) 812
BspQI GCTCTTC 1 cut(s) 415
BspT107I GGYRCC 1 cut(s) 484
BsrDI GCAATG 4 cut(s) 267, 397, 546, 818
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 2 cut(s) 223, 937
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 7 cut(s) 103, 204, 243, 502, 673, 739, 833
BssMI GATC 2 cut(s) 285, 804
BssT1I CCWWGG 2 cut(s) 204, 833
Bst2UI CCWGG 3 cut(s) 212, 217, 741
Bst4CI ACNGT 3 cut(s) 137, 787, 946
Bst6I CTCTTC 2 cut(s) 26, 415
BstAPI GCANNNNNTGC 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 303
BstC8I GCNNGC 4 cut(s) 201, 235, 479, 483
BstDEI CTNAG 6 cut(s) 49, 249, 336, 471, 640, 773
BstDSI CCRYGG 1 cut(s) 103
BstF5I GGATG 1 cut(s) 618
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 2 cut(s) 288, 807
BstMBI GATC 2 cut(s) 285, 804
BstNI CCWGG 3 cut(s) 212, 217, 741
BstSCI CCNGG 4 cut(s) 210, 215, 242, 739
BstSFI CTRYAG 2 cut(s) 133, 514
BstV2I GAAGAC 3 cut(s) 115, 632, 650
BstXI CCANNNNNNTGG 1 cut(s) 174
BsuRI GGCC 6 cut(s) 203, 215, 233, 317, 672, 679
BtgI CCRYGG 1 cut(s) 103
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 618
BtsI GCAGTG 1 cut(s) 373
BtsIMutI CAGTG 6 cut(s) 373, 479, 648, 752, 770, 930
BveI ACCTGC 2 cut(s) 521, 607
Cac8I GCNNGC 4 cut(s) 201, 235, 479, 483
CfoI GCGC 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 3 cut(s) 208, 315, 677
CseI GACGC 1 cut(s) 261
Csp6I GTAC 3 cut(s) 304, 596, 811
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 4 cut(s) 128, 141, 174, 349
CviQI GTAC 3 cut(s) 304, 596, 811
DdeI CTNAG 6 cut(s) 49, 249, 336, 471, 640, 773
DpnI GATC 2 cut(s) 287, 806
DpnII GATC 2 cut(s) 285, 804
EaeI YGGCCR 3 cut(s) 201, 231, 670
Eam1104I CTCTTC 2 cut(s) 26, 415
EarI CTCTTC 2 cut(s) 26, 415
Eco130I CCWWGG 2 cut(s) 204, 833
Eco24I GRGCYC 1 cut(s) 299
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 136
EcoRII CCWGG 3 cut(s) 210, 215, 739
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 2 cut(s) 204, 833
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 2 cut(s) 204, 833
FaeI CATG 4 cut(s) 131, 144, 177, 352
FaiI YATR 7 cut(s) 129, 142, 175, 350, 534, 730, 855
FaqI GGGAC 4 cut(s) 248, 340, 679, 955
FatI CATG 4 cut(s) 127, 140, 173, 348
FauI CCCGC 1 cut(s) 166
FblI GTMKAC 1 cut(s) 132
FokI GGATG 1 cut(s) 605
FriOI GRGCYC 1 cut(s) 299
FspBI CTAG 3 cut(s) 239, 581, 834
GlaI GCGC 1 cut(s) 91
GsaI CCCAGC 1 cut(s) 498
GsuI CTGGAG 2 cut(s) 206, 888
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 6 cut(s) 203, 215, 233, 317, 672, 679
HapII CCGG 3 cut(s) 243, 276, 633
HgaI GACGC 1 cut(s) 261
HhaI GCGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 131, 144, 177, 352
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 1 cut(s) 859
HindII GTYRAC 1 cut(s) 859
HinfI GANTC 3 cut(s) 328, 700, 953
HpaII CCGG 3 cut(s) 243, 276, 633
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 4 cut(s) 133, 358, 813, 859
Hpy188I TCNGA 4 cut(s) 155, 294, 339, 506
Hpy188III TCNNGA 3 cut(s) 276, 622, 826
Hpy8I GTNNAC 4 cut(s) 133, 358, 813, 859
HpyAV CCTTC 5 cut(s) 43, 160, 454, 583, 876
HpyCH4III ACNGT 3 cut(s) 137, 787, 946
HpyCH4IV ACGT 2 cut(s) 186, 302
HpyCH4V TGCA 8 cut(s) 87, 390, 477, 516, 551, 618, 869, 938
HpyF3I CTNAG 6 cut(s) 49, 249, 336, 471, 640, 773
HpySE526I ACGT 2 cut(s) 186, 302
Hsp92II CATG 4 cut(s) 131, 144, 177, 352
HspAI GCGC 1 cut(s) 90
Kpn2I TCCGGA 1 cut(s) 275
Kzo9I GATC 2 cut(s) 285, 804
LguI GCTCTTC 1 cut(s) 415
LmnI GCTCC 4 cut(s) 149, 195, 225, 464
LweI GCATC 4 cut(s) 361, 560, 580, 627
MaeI CTAG 3 cut(s) 239, 581, 834
MaeII ACGT 2 cut(s) 186, 302
MaeIII GTNAC 4 cut(s) 526, 561, 750, 768
MalI GATC 2 cut(s) 287, 806
MboI GATC 2 cut(s) 285, 804
MboII GAAGA 5 cut(s) 13, 115, 402, 637, 650
MfeI CAATTG 1 cut(s) 991
MhlI GDGCHC 3 cut(s) 192, 299, 469
MlsI TGGCCA 2 cut(s) 203, 233
MluCI AATT 4 cut(s) 870, 888, 961, 991
MluNI TGGCCA 2 cut(s) 203, 233
MlyI GAGTC 2 cut(s) 322, 694
MmeI TCCRAC 1 cut(s) 859
Mox20I TGGCCA 2 cut(s) 203, 233
MroI TCCGGA 1 cut(s) 275
MscI TGGCCA 2 cut(s) 203, 233
MseI TTAA 4 cut(s) 423, 522, 863, 1006
MslI CAYNNNNRTG 3 cut(s) 172, 353, 472
Msp20I TGGCCA 2 cut(s) 203, 233
MspA1I CMGCKG 1 cut(s) 498
MspI CCGG 3 cut(s) 243, 276, 633
MspR9I CCNGG 4 cut(s) 212, 217, 244, 741
MunI CAATTG 1 cut(s) 991
MvaI CCWGG 3 cut(s) 212, 217, 741
NciI CCSGG 1 cut(s) 244
NdeII GATC 2 cut(s) 285, 804
NlaIII CATG 4 cut(s) 131, 144, 177, 352
NlaIV GGNNCC 4 cut(s) 221, 384, 486, 541
NmeAIII GCCGAG 1 cut(s) 698
NmuCI GTSAC 3 cut(s) 561, 750, 768
OliI CACNNNNGTG 1 cut(s) 472
PaqCI CACCTGC 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 415
PfeI GAWTC 1 cut(s) 953
PflMI CCANNNNNTGG 2 cut(s) 199, 229
PleI GAGTC 2 cut(s) 322, 694
PpsI GAGTC 2 cut(s) 322, 694
Ppu21I YACGTR 1 cut(s) 303
Psp6I CCWGG 3 cut(s) 210, 215, 739
PspFI CCCAGC 1 cut(s) 494
PspGI CCWGG 3 cut(s) 210, 215, 739
PspN4I GGNNCC 4 cut(s) 221, 384, 486, 541
PspPI GGNCC 3 cut(s) 208, 315, 677
PstI CTGCAG 1 cut(s) 518
PvuII CAGCTG 1 cut(s) 498
RsaI GTAC 3 cut(s) 305, 597, 812
RsaNI GTAC 3 cut(s) 304, 596, 811
RseI CAYNNNNRTG 3 cut(s) 172, 353, 472
SapI GCTCTTC 1 cut(s) 415
SaqAI TTAA 4 cut(s) 423, 522, 863, 1006
Sau3AI GATC 2 cut(s) 285, 804
Sau96I GGNCC 3 cut(s) 208, 315, 677
SchI GAGTC 2 cut(s) 322, 694
ScrFI CCNGG 4 cut(s) 212, 217, 244, 741
SduI GDGCHC 3 cut(s) 192, 299, 469
SfaNI GCATC 4 cut(s) 361, 560, 580, 627
SfcI CTRYAG 2 cut(s) 133, 514
SinI GGWCC 1 cut(s) 208
SmiMI CAYNNNNRTG 3 cut(s) 172, 353, 472
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
Sse9I AATT 4 cut(s) 870, 888, 961, 991
SsiI CCGC 2 cut(s) 159, 650
SspMI CTAG 3 cut(s) 239, 581, 834
StyD4I CCNGG 4 cut(s) 210, 215, 242, 739
StyI CCWWGG 2 cut(s) 204, 833
TaaI ACNGT 3 cut(s) 137, 787, 946
TaiI ACGT 2 cut(s) 189, 305
TasI AATT 4 cut(s) 870, 888, 961, 991
TatI WGTACW 1 cut(s) 810
TfiI GAWTC 1 cut(s) 953
Tru1I TTAA 4 cut(s) 423, 522, 863, 1006
Tru9I TTAA 4 cut(s) 423, 522, 863, 1006
TscAI CASTG 6 cut(s) 373, 479, 648, 759, 777, 937
TseFI GTSAC 3 cut(s) 561, 750, 768
Tsp45I GTSAC 3 cut(s) 561, 750, 768
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 6 cut(s) 373, 479, 648, 759, 777, 937
Van91I CCANNNNNTGG 2 cut(s) 199, 229
VpaK11BI GGWCC 1 cut(s) 208
XmaJI CCTAGG 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 132
XspI CTAG 3 cut(s) 239, 581, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.