Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0018501

Physical Location & Seq

Genomic Coordinates Reverse (-)

13477160 .. 13478565

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G085200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGTTTACTCTGAGCACAAAAGCATTACTGTTCTTATGCTTCCATGGCTAGCTCACGGCCACATTTCTCCCTTCCTAGAGCTTGCCAAGAAGCTTACCTCTAAGAGAAATTTTCACATCTTTATTTGTTCCACGCCTGTCAATCTCACCTCCATTAAGCCAAAACTCTCTCCAAAATACTCTCATTGCATTGAATTTGTGGAACTTCATCTTCCACATGAAGAGTTGCCTGAATTGCCACCTCATTACCACACCACCAATGGCCTCCCTCCTCATCTCATGTCCACTCTCAAAAGGGCCTTCGACATGTCCAGCAATAACTTCTCCAACATCCTCACAACCCTAAAGCCAGATTTGCTCATTTATGATTTTATTCCACCATGGGCACCCTCTCAAGCTTCGTTGCAAAATATTCCATCGGTCCGGTTCATCACCACCAGTGCTGCCTTGAGCTCACTTCGTGTTCACCATCTCAAGAACCCTCGTGTCAAGTTTCCTTTTCCTTCGATCTATCTTCGAGATTACGAAGCTAAAAAGTTCAACAATCTGTTAGAACCTTCGTCAAATGACATCAACGACGGAGACCGCGTTCAGCAATGCAGTGCTCGATCATGCAACATCATTTTGGTGAAGACATCTAGAGAGATTGAAGCAAAATATGTTGATTATCTCTCTGGTTTAATGGGGAAGAAGATCGTGCCAGTTGGTCCGCTTGTTCAAGAGCCAATGGATCTAAAAGTTGATGAGGAAACATGGATCATGAAATGGATGAACAAAAGGGAAAGGTCTTCGGTTGTTTATGTTTGCTTTGGGAGTGAGTACTTTTTGTCCAGGGAGCAAATCGAAGAGGTAGCTCATGGGTTAGAGCTTAGCAAAGTGAGCTTTATTTGGGTTATAAGATTTCCAAAGGAAGAGAAAGGTAAAAGAGTTGAAGAGGTGTTACCAGAAGGGTTTTTAGAGAGGGTGGGGGAGAAGGGAATTATAGTGGAGGGTTGGGCTCCGCAGGCAAACATATTGAAGCATTCAAGGGTTGGTGGGTTTGTGAGTCACTGTGGATGGAGCTCAGTGTTGGAGAGCATCAAGTTTGGTGTTCCAATTATAGCCATGCCTATGCATCTTGACCAGCCAATTAACGCTAGATTAGTAGAGGAGGTGGGTGTTGGTGTGGAGGTTAAAAGAACAGGAGAAGGAATTTTGCAAAGAGAAGAGATGGCGAAGGTGATCAGAAAGGTGGTTGTGGAGAAAATTGGAGAGGGCATGAGAAAAAAGGCATTGGAATTAAGAGACAACATGAAAAACAAAGATGGAGAGATAGATGGGGTCGTGGAGGAATTGATGCAATTTGTAGGAGAAGGGAAACAAATATCTACTTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

460

Amino Acids

52.2

Weight (kDa)

8.35

Isoelectric Point (pI)

52.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018501)

Species	Orthologous Gene IDs
malus_domestica	MD02G1248500.v1.1 MD07G1067600.v1.1 MD07G1067700.v1.1
prunus_persica	Prupe.2G084900_v2.0.a1 Prupe.2G085000_v2.0.a1 Prupe.2G085200_v2.0.a1 Prupe.2G085700_v2.0.a1 Prupe.2G086000_v2.0.a1
pyrus_communis	pycom07g05170 pycom07g05190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	896
AccB1I	GGYRCC	1 cut(s)	385
AccII	CGCG	1 cut(s)	588
AciI	CCGC	3 cut(s)	586, 710, 1001
AclWI	GGATC	2 cut(s)	738, 764
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	3 cut(s)	109, 194, 1191
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	1 cut(s)	821
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	7 cut(s)	194, 541, 650, 719, 932, 1018, 1026
AjnI	CCWGG	1 cut(s)	830
AloI	GAACNNNNNNTCC	2 cut(s)	573, 605
Alw21I	GWGCWC	4 cut(s)	18, 455, 607, 1064
Alw26I	GTCTC	2 cut(s)	576, 1278
AlwI	GGATC	2 cut(s)	738, 764
AoxI	GGCC	3 cut(s)	58, 262, 297
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	3 cut(s)	109, 194, 1191
AspS9I	GGNCC	3 cut(s)	297, 421, 707
AsuHPI	GGTGA	5 cut(s)	139, 424, 458, 640, 1231
AsuNHI	GCTAGC	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	421, 707
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	3 cut(s)	455, 1000, 1064
BarI	GAAGNNNNNNTAC	2 cut(s)	924, 956
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	2 cut(s)	638, 780
Bbv12I	GWGCWC	4 cut(s)	18, 455, 607, 1064
BbvI	GCAGC	1 cut(s)	430
BccI	CCATC	6 cut(s)	424, 477, 1050, 1204, 1298, 1310
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	1 cut(s)	832
BclI	TGATCA	1 cut(s)	1221
BcoDI	GTCTC	2 cut(s)	576, 1278
BfaI	CTAG	4 cut(s)	50, 77, 639, 1137
BisI	GCNGC	1 cut(s)	444
BlpI	GCTNAGC	1 cut(s)	869
BlsI	GCNGC	1 cut(s)	445
BmcAI	AGTACT	1 cut(s)	821
Bme1390I	CCNGG	1 cut(s)	832
Bme18I	GGWCC	2 cut(s)	421, 707
BmgT120I	GGNCC	3 cut(s)	297, 421, 707
BmiI	GGNNCC	2 cut(s)	387, 999
BmrFI	CCNGG	1 cut(s)	832
BmsI	GCATC	3 cut(s)	1086, 1123, 1326
BmtI	GCTAGC	1 cut(s)	53
BpiI	GAAGAC	2 cut(s)	638, 780
Bpu1102I	GCTNAGC	1 cut(s)	869
BpuEI	CTTGAG	3 cut(s)	378, 458, 469
BsaI	GGTCTC	1 cut(s)	576
BsaJI	CCNNGG	3 cut(s)	44, 380, 831
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	573, 603
Bse1I	ACTGG	2 cut(s)	438, 701
Bse3DI	GCAATG	2 cut(s)	184, 602
BseBI	CCWGG	1 cut(s)	832
BseDI	CCNNGG	3 cut(s)	44, 380, 831
BseGI	GGATG	3 cut(s)	330, 774, 1061
BseMI	GCAATG	2 cut(s)	184, 602
BseMII	CTCAG	1 cut(s)	1077
BseNI	ACTGG	2 cut(s)	438, 701
BseRI	GAGGAG	2 cut(s)	261, 1163
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	430
Bsh1236I	CGCG	1 cut(s)	588
BshFI	GGCC	3 cut(s)	60, 264, 299
BshNI	GGYRCC	1 cut(s)	385
BsiHKAI	GWGCWC	4 cut(s)	18, 455, 607, 1064
BsiSI	CCGG	1 cut(s)	424
BsmAI	GTCTC	2 cut(s)	576, 1278
BsmI	GAATGC	1 cut(s)	1021
BsnI	GGCC	3 cut(s)	60, 264, 299
Bso31I	GGTCTC	1 cut(s)	576
Bsp1286I	GDGCHC	6 cut(s)	18, 388, 455, 607, 1000, 1064
Bsp143I	GATC	6 cut(s)	507, 608, 693, 730, 756, 1221
Bsp1720I	GCTNAGC	1 cut(s)	869
Bsp19I	CCATGG	2 cut(s)	44, 380
BspACI	CCGC	3 cut(s)	586, 710, 1001
BspANI	GGCC	3 cut(s)	60, 264, 299
BspCNI	CTCAG	2 cut(s)	4, 1076
BspFNI	CGCG	1 cut(s)	588
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	2 cut(s)	387, 999
BspOI	GCTAGC	1 cut(s)	53
BspPI	GGATC	2 cut(s)	738, 764
BspT107I	GGYRCC	1 cut(s)	385
BspTNI	GGTCTC	1 cut(s)	576
BsrDI	GCAATG	2 cut(s)	184, 602
BsrI	ACTGG	2 cut(s)	438, 701
BssECI	CCNNGG	3 cut(s)	44, 380, 831
BssMI	GATC	6 cut(s)	507, 608, 693, 730, 756, 1221
BssSI	CACGAG	1 cut(s)	483
BssT1I	CCWWGG	2 cut(s)	44, 380
Bst2BI	CACGAG	1 cut(s)	483
Bst2UI	CCWGG	1 cut(s)	832
Bst4CI	ACNGT	2 cut(s)	31, 1052
Bst6I	CTCTTC	5 cut(s)	216, 840, 906, 927, 1200
BstC8I	GCNNGC	3 cut(s)	51, 84, 1005
BstDEI	CTNAG	4 cut(s)	12, 102, 869, 1063
BstDSI	CCRYGG	2 cut(s)	44, 380
BstF5I	GGATG	3 cut(s)	330, 774, 1061
BstFNI	CGCG	1 cut(s)	588
BstKTI	GATC	6 cut(s)	510, 611, 696, 733, 759, 1224
BstMAI	GTCTC	2 cut(s)	576, 1278
BstMBI	GATC	6 cut(s)	507, 608, 693, 730, 756, 1221
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 235, 355, 879, 1004
BstNI	CCWGG	1 cut(s)	832
BstNSI	RCATGY	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	830
BstSLI	GKGCMC	1 cut(s)	388
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	1 cut(s)	430
BstV2I	GAAGAC	2 cut(s)	638, 780
BstX2I	RGATCY	1 cut(s)	730
BstYI	RGATCY	1 cut(s)	730
BsuRI	GGCC	3 cut(s)	60, 264, 299
BtgI	CCRYGG	2 cut(s)	44, 380
BtsCI	GGATG	3 cut(s)	330, 774, 1061
BtsI	GCAGTG	1 cut(s)	607
BtsIMutI	CAGTG	4 cut(s)	445, 607, 1048, 1071
Cac8I	GCNNGC	3 cut(s)	51, 84, 1005
CciI	TCATGA	1 cut(s)	759
Cfr13I	GGNCC	3 cut(s)	297, 421, 707
CpoI	CGGWCCG	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	820
CspI	CGGWCCG	1 cut(s)	421
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	4 cut(s)	12, 102, 869, 1063
DpnI	GATC	6 cut(s)	509, 610, 695, 732, 758, 1223
DpnII	GATC	6 cut(s)	507, 608, 693, 730, 756, 1221
DraIII	CACNNNGTG	1 cut(s)	461
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	5 cut(s)	216, 840, 906, 927, 1200
EarI	CTCTTC	5 cut(s)	216, 840, 906, 927, 1200
Ecl136II	GAGCTC	2 cut(s)	453, 1062
Eco130I	CCWWGG	2 cut(s)	44, 380
Eco24I	GRGCYC	3 cut(s)	455, 1000, 1064
Eco31I	GGTCTC	1 cut(s)	576
Eco47I	GGWCC	2 cut(s)	421, 707
Eco53kI	GAGCTC	2 cut(s)	453, 1062
EcoICRI	GAGCTC	2 cut(s)	453, 1062
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	830
EcoT14I	CCWWGG	2 cut(s)	44, 380
EcoT22I	ATGCAT	1 cut(s)	1116
EcoT38I	GRGCYC	3 cut(s)	455, 1000, 1064
ErhI	CCWWGG	2 cut(s)	44, 380
FbaI	TGATCA	1 cut(s)	1221
Fnu4HI	GCNGC	1 cut(s)	444
FokI	GGATG	3 cut(s)	317, 781, 1068
FriOI	GRGCYC	3 cut(s)	455, 1000, 1064
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	4 cut(s)	50, 77, 639, 1137
GluI	GCNGC	1 cut(s)	444
HaeIII	GGCC	3 cut(s)	60, 264, 299
HapII	CCGG	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	92, 396
HinfI	GANTC	1 cut(s)	1045
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	5 cut(s)	139, 424, 458, 640, 1231
Hpy166II	GTNNAC	3 cut(s)	7, 285, 466
Hpy188I	TCNGA	2 cut(s)	13, 1226
Hpy188III	TCNNGA	6 cut(s)	475, 518, 639, 719, 760, 1118
Hpy8I	GTNNAC	3 cut(s)	7, 285, 466
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	9 cut(s)	82, 310, 513, 567, 941, 967, 1181, 1210, 1346
HpyCH4III	ACNGT	2 cut(s)	31, 1052
HpyCH4V	TGCA	7 cut(s)	189, 406, 600, 615, 1114, 1198, 1339
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 235, 355, 879, 1004
HpyF3I	CTNAG	4 cut(s)	12, 102, 869, 1063
Ksp22I	TGATCA	1 cut(s)	1221
Kzo9I	GATC	6 cut(s)	507, 608, 693, 730, 756, 1221
LmnI	GCTCC	3 cut(s)	835, 1003, 1059
Lsp1109I	GCAGC	1 cut(s)	430
LweI	GCATC	3 cut(s)	1086, 1123, 1326
MaeI	CTAG	4 cut(s)	50, 77, 639, 1137
MaeIII	GTNAC	2 cut(s)	939, 1046
MalI	GATC	6 cut(s)	509, 610, 695, 732, 758, 1223
MboI	GATC	6 cut(s)	507, 608, 693, 730, 756, 1221
MflI	RGATCY	1 cut(s)	730
MhlI	GDGCHC	6 cut(s)	18, 388, 455, 607, 1000, 1064
MlyI	GAGTC	1 cut(s)	1054
MmeI	TCCRAC	2 cut(s)	351, 1050
Mph1103I	ATGCAT	1 cut(s)	1116
MseI	TTAA	6 cut(s)	156, 680, 1131, 1173, 1280, 1374
MslI	CAYNNNNRTG	2 cut(s)	626, 1109
MspI	CCGG	1 cut(s)	424
MspR9I	CCNGG	1 cut(s)	832
Mva1269I	GAATGC	1 cut(s)	1021
MvaI	CCWGG	1 cut(s)	832
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	5 cut(s)	46, 235, 355, 879, 1004
NcoI	CCATGG	2 cut(s)	44, 380
NdeII	GATC	6 cut(s)	507, 608, 693, 730, 756, 1221
NheI	GCTAGC	1 cut(s)	49
NlaIV	GGNNCC	2 cut(s)	387, 999
NmuCI	GTSAC	1 cut(s)	1046
NsiI	ATGCAT	1 cut(s)	1116
NspI	RCATGY	1 cut(s)	310
PagI	TCATGA	1 cut(s)	759
PciI	ACATGT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PctI	GAATGC	1 cut(s)	1021
PkrI	GCNGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	1053
PpsI	GAGTC	1 cut(s)	1053
PscI	ACATGT	1 cut(s)	306
PsiI	TTATAA	1 cut(s)	896
Psp124BI	GAGCTC	2 cut(s)	455, 1064
Psp6I	CCWGG	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	830
PspN4I	GGNNCC	2 cut(s)	387, 999
PspPI	GGNCC	3 cut(s)	297, 421, 707
PsuI	RGATCY	1 cut(s)	730
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
RseI	CAYNNNNRTG	2 cut(s)	626, 1109
Rsr2I	CGGWCCG	1 cut(s)	421
RsrII	CGGWCCG	1 cut(s)	421
SacI	GAGCTC	2 cut(s)	455, 1064
SaqAI	TTAA	6 cut(s)	156, 680, 1131, 1173, 1280, 1374
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	6 cut(s)	507, 608, 693, 730, 756, 1221
Sau96I	GGNCC	3 cut(s)	297, 421, 707
ScaI	AGTACT	1 cut(s)	821
SchI	GAGTC	1 cut(s)	1054
ScrFI	CCNGG	1 cut(s)	832
SduI	GDGCHC	6 cut(s)	18, 388, 455, 607, 1000, 1064
SfaNI	GCATC	3 cut(s)	1086, 1123, 1326
SinI	GGWCC	2 cut(s)	421, 707
SmiMI	CAYNNNNRTG	2 cut(s)	626, 1109
SmlI	CTYRAG	3 cut(s)	393, 448, 473
SmoI	CTYRAG	3 cut(s)	393, 448, 473
SsiI	CCGC	3 cut(s)	586, 710, 1001
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	4 cut(s)	50, 77, 639, 1137
SstI	GAGCTC	2 cut(s)	455, 1064
StyD4I	CCNGG	1 cut(s)	830
StyI	CCWWGG	2 cut(s)	44, 380
TaaI	ACNGT	2 cut(s)	31, 1052
TaqI	TCGA	5 cut(s)	303, 506, 517, 607, 843
TaqII	GACCGA	1 cut(s)	409
TatI	WGTACW	1 cut(s)	819
Tru1I	TTAA	6 cut(s)	156, 680, 1131, 1173, 1280, 1374
Tru9I	TTAA	6 cut(s)	156, 680, 1131, 1173, 1280, 1374
TscAI	CASTG	4 cut(s)	445, 607, 1055, 1071
TseFI	GTSAC	1 cut(s)	1046
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	1046
TspDTI	ATGAA	6 cut(s)	197, 234, 418, 776, 785, 1307
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	4 cut(s)	445, 607, 1055, 1071
VpaK11BI	GGWCC	2 cut(s)	421, 707
XapI	RAATTY	3 cut(s)	109, 194, 1191
XbaI	TCTAGA	1 cut(s)	638
XceI	RCATGY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XspI	CTAG	4 cut(s)	50, 77, 639, 1137
ZrmI	AGTACT	1 cut(s)	821
Zsp2I	ATGCAT	1 cut(s)	1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.