Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0019259

Physical Location & Seq

Genomic Coordinates Forward (+)

14858165 .. 14859477

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G093800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCAGCACTAAGGTGATTGGTGCTGCATTCTTGGTTTTGCTCCTCGTGGAGCTCTCCTTTGCTGCTAGGTCATCAAAGGCTATCAACGGAGGTAGGGGTAGTGGTGGTGGAGGTGGAGGAGGAGGAGGAGAGGGAGGAGGAGGTGGTTCAGCATCCGGGTCCGGGTCCGGGTATGGTTCGGGGCATGGCTATGGGAGTGGCACAGGGTATGGTAGTGAAGGAGGAGGCGGTGGAGGTGAAGGTGGAGGCGGTGGTGGTGGTGGTGGATATGGTGCAAATGGTGGTTCTGGGTCGGGATATGGGTCCGGCAGTGGCTCGGGATATGGGTCTGGTGGTGGGAAAGGAGGTGGTGGAGGCAGCGGAGGCGGTAAAGGTGGTGGTGGAGGCGGAGGTGGAGGCTCGGGTTCAGGAAGTGGGTCAGGTTATGGCTCCGGATATGGAAGTGGAAGTGGATATGGAAGCGGAGGCGGCAAGGGAGGTGGCGGTGGCGGTGGTGGTGGAGGAGGTGGCGGTGGTGGCGGCGGTGGAAGTGGCCACGGCGGTGGTAGGGGCTCTGGCTACGGATCAGGTTATGGGTCAGGATACGGTGGTGGAGGCGGGGAAGATGATTCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

16.42

Weight (kDa)

7.91

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019259)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g06591
prunus_persica	Prupe.2G093800_v2.0.a1
pyrus_communis	pycom02g20880
rosa_chinensis	RchiOBHm_Chr1g0335261
rosa_laevigata	RLG00000029391
rosa_multiflora	Rmu_sc0001790.1_g000004
rosa_roxburghii	Rroxscaffold_4G00316110
rosa_samantha	Rh1BG111900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	434
AclWI	GGATC	1 cut(s)	574
AcoI	YGGCCR	2 cut(s)	3, 535
AfiI	CCNNNNNNNGG	2 cut(s)	165, 171
AleI	CACNNNNGTG	2 cut(s)	14, 543
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	574
Ama87I	CYCGRG	2 cut(s)	319, 403
Aor13HI	TCCGGA	1 cut(s)	434
AoxI	GGCC	2 cut(s)	3, 535
ApeKI	GCWGC	3 cut(s)	26, 65, 360
AspS9I	GGNCC	3 cut(s)	162, 168, 306
AsuC2I	CCSGG	3 cut(s)	160, 166, 172
AsuHPI	GGTGA	3 cut(s)	28, 251, 606
AvaI	CYCGRG	2 cut(s)	319, 403
AvaII	GGWCC	3 cut(s)	162, 168, 306
BaeI	ACNNNNGTAYC	2 cut(s)	577, 610
BalI	TGGCCA	2 cut(s)	5, 537
BanII	GRGCYC	2 cut(s)	57, 557
BauI	CACGAG	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	13, 52, 372
BceAI	ACGGC	1 cut(s)	556
BciVI	GTATCC	1 cut(s)	578
BcnI	CCSGG	3 cut(s)	160, 166, 172
BfaI	CTAG	1 cut(s)	69
BfuI	GTATCC	1 cut(s)	578
BisI	GCNGC	5 cut(s)	27, 66, 361, 472, 523
BlsI	GCNGC	5 cut(s)	28, 67, 362, 473, 524
Bme1390I	CCNGG	3 cut(s)	160, 166, 172
Bme18I	GGWCC	3 cut(s)	162, 168, 306
BmeT110I	CYCGRG	2 cut(s)	319, 403
BmgT120I	GGNCC	3 cut(s)	162, 168, 306
BmiI	GGNNCC	4 cut(s)	163, 169, 307, 433
BmrFI	CCNGG	3 cut(s)	160, 166, 172
BmsI	GCATC	1 cut(s)	164
BpuMI	CCSGG	3 cut(s)	160, 166, 172
BsaJI	CCNNGG	1 cut(s)	538
BsaWI	WCCGGW	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 171
BseAI	TCCGGA	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	165, 171
BseRI	GAGGAG	9 cut(s)	35, 135, 138, 141, 144, 153, 156, 240, 519
BseXI	GCAGC	3 cut(s)	13, 52, 372
BshFI	GGCC	2 cut(s)	5, 537
BsiHKAI	GWGCWC	1 cut(s)	57
BsiHKCI	CYCGRG	2 cut(s)	319, 403
BsiSI	CCGG	5 cut(s)	159, 165, 171, 309, 435
BslI	CCNNNNNNNGG	2 cut(s)	165, 171
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	2 cut(s)	5, 537
BsoBI	CYCGRG	2 cut(s)	319, 403
Bsp1286I	GDGCHC	2 cut(s)	57, 557
Bsp13I	TCCGGA	1 cut(s)	434
Bsp143I	GATC	1 cut(s)	566
BspANI	GGCC	2 cut(s)	5, 537
BspEI	TCCGGA	1 cut(s)	434
BspLI	GGNNCC	4 cut(s)	163, 169, 307, 433
BspPI	GGATC	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	1 cut(s)	566
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst4CI	ACNGT	1 cut(s)	590
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	569
BstMBI	GATC	1 cut(s)	566
BstMWI	GCNNNNNNNGC	3 cut(s)	366, 471, 519
BstSCI	CCNGG	3 cut(s)	158, 164, 170
BstV1I	GCAGC	3 cut(s)	13, 52, 372
BstXI	CCANNNNNNTGG	1 cut(s)	545
BsuI	GTATCC	1 cut(s)	578
BsuRI	GGCC	2 cut(s)	5, 537
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	162, 168, 306
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	2 cut(s)	188, 618
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	568
DpnII	GATC	1 cut(s)	566
EaeI	YGGCCR	2 cut(s)	3, 535
EciI	GGCGGA	1 cut(s)	405
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	2 cut(s)	57, 557
Eco47I	GGWCC	3 cut(s)	162, 168, 306
Eco53kI	GAGCTC	1 cut(s)	55
Eco88I	CYCGRG	2 cut(s)	319, 403
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	57, 557
FaeI	CATG	2 cut(s)	191, 621
FatI	CATG	2 cut(s)	187, 617
FauI	CCCGC	1 cut(s)	593
Fnu4HI	GCNGC	5 cut(s)	27, 66, 361, 472, 523
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	2 cut(s)	57, 557
Fsp4HI	GCNGC	5 cut(s)	27, 66, 361, 472, 523
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	5 cut(s)	27, 66, 361, 472, 523
HaeIII	GGCC	2 cut(s)	5, 537
HapII	CCGG	5 cut(s)	159, 165, 171, 309, 435
Hin1II	CATG	2 cut(s)	191, 621
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	5 cut(s)	159, 165, 171, 309, 435
HphI	GGTGA	3 cut(s)	28, 251, 606
Hpy188III	TCNNGA	5 cut(s)	297, 321, 411, 435, 582
HpyAV	CCTTC	2 cut(s)	215, 236
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4V	TGCA	2 cut(s)	29, 278
HpyF10VI	GCNNNNNNNGC	3 cut(s)	366, 471, 519
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	191, 621
Kpn2I	TCCGGA	1 cut(s)	434
Kzo9I	GATC	1 cut(s)	566
LmnI	GCTCC	3 cut(s)	48, 52, 437
Lsp1109I	GCAGC	3 cut(s)	13, 52, 372
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	1 cut(s)	69
MalI	GATC	1 cut(s)	568
MboI	GATC	1 cut(s)	566
MboII	GAAGA	1 cut(s)	617
MhlI	GDGCHC	2 cut(s)	57, 557
MlsI	TGGCCA	2 cut(s)	5, 537
MluNI	TGGCCA	2 cut(s)	5, 537
Mox20I	TGGCCA	2 cut(s)	5, 537
MroI	TCCGGA	1 cut(s)	434
MscI	TGGCCA	2 cut(s)	5, 537
MslI	CAYNNNNRTG	3 cut(s)	14, 192, 543
Msp20I	TGGCCA	2 cut(s)	5, 537
MspA1I	CMGCKG	1 cut(s)	363
MspI	CCGG	5 cut(s)	159, 165, 171, 309, 435
MspR9I	CCNGG	3 cut(s)	160, 166, 172
Mva1269I	GAATGC	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	366, 471, 519
NciI	CCSGG	3 cut(s)	160, 166, 172
NdeII	GATC	1 cut(s)	566
NlaIII	CATG	2 cut(s)	191, 621
NlaIV	GGNNCC	4 cut(s)	163, 169, 307, 433
OliI	CACNNNNGTG	2 cut(s)	14, 543
PctI	GAATGC	1 cut(s)	29
PfeI	GAWTC	1 cut(s)	611
PkrI	GCNGC	5 cut(s)	28, 67, 362, 473, 524
Psp124BI	GAGCTC	1 cut(s)	57
PspN4I	GGNNCC	4 cut(s)	163, 169, 307, 433
PspPI	GGNCC	3 cut(s)	162, 168, 306
RseI	CAYNNNNRTG	3 cut(s)	14, 192, 543
SacI	GAGCTC	1 cut(s)	57
SatI	GCNGC	5 cut(s)	27, 66, 361, 472, 523
Sau3AI	GATC	1 cut(s)	566
Sau96I	GGNCC	3 cut(s)	162, 168, 306
ScrFI	CCNGG	3 cut(s)	160, 166, 172
SduI	GDGCHC	2 cut(s)	57, 557
SfaNI	GCATC	1 cut(s)	164
SinI	GGWCC	3 cut(s)	162, 168, 306
SmiMI	CAYNNNNRTG	3 cut(s)	14, 192, 543
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	158, 164, 170
TaaI	ACNGT	1 cut(s)	590
TauI	GCSGC	2 cut(s)	474, 525
TfiI	GAWTC	1 cut(s)	611
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	3 cut(s)	26, 65, 360
TspGWI	ACGGA	2 cut(s)	105, 579
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	3 cut(s)	162, 168, 306
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.