RLG00000029391

Glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
37952210 .. 37952830
621 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029391

Sequence Viewer

Length: 621 bp
ATGGCCAACACTAAGGTAATTGGTGCTGCATTCTTGATATTGCTCCTTGTGGAGCTATCCTTTGCGGCTAGATCATCAAAGGCCATTAAAGCTAGTGGCGGCCGTGGTGGCGGTGGCGGTGGAGGTGGAGGTAGAGGAGGAGGGGGTGGCTCAGGCTCTGGGTATGGTTCTGGAAAAGGTTCAGGGAGTGGTTCGGGGTATGGTAGTAATGGAGGAGGAGGAGGAGGTGGTGGTGGAGGCGAAGGTGGAGGGGGAGGTGGCGGTGGTGGAACGGGTTTAAATGGTGGTTCTGGGTCAGGATATGGGTCCGGTAGTGGCTCCGGATATGGATCAGGGGGAGGAATTGGAAAAGGTGGAGGGGGAGGAGGTGGAGGTGGTGGTGGCGGAGGAGGTGGTGGTGGTGGAGGCACTGGAAATGGTGGGTCTGGTTATGGGTCGGGATATGGAAGTGGAAGTGGATATGGGAGTGGAGGTGGCAAAGGTGGAGGTGGCGGCGGAGGTGGAGGTGGTGGCGGCGGCGGAGGCGGAGGTGGTAATGGTAGTGGTAGCGGGTCTGGTTATGGGTCAGGCTCAGGCTCAGGCTATGGCAGTGGAGGTGGAGATTATTGGGATTCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

16.3

Weight (kDa)

9.52

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019259)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06591
prunus_persica Prupe.2G093800_v2.0.a1
pyrus_communis pycom02g20880
rosa_chinensis RchiOBHm_Chr1g0335261
rosa_laevigata RLG00000029391
rosa_multiflora Rmu_sc0001790.1_g000004
rosa_roxburghii Rroxscaffold_4G00316110
rosa_samantha Rh1BG111900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 320
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 2 cut(s) 3, 100
AluBI AGCT 2 cut(s) 55, 92
AluI AGCT 2 cut(s) 55, 92
AlwI GGATC 1 cut(s) 337
AlwNI CAGNNNCTG 1 cut(s) 158
Aor13HI TCCGGA 1 cut(s) 320
AoxI GGCC 3 cut(s) 3, 81, 100
ApeKI GCWGC 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 606
AvaII GGWCC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 87
BfaI CTAG 2 cut(s) 69, 93
BglI GCCNNNNNGGC 1 cut(s) 108
BisI GCNGC 6 cut(s) 27, 66, 100, 493, 514, 517
BlsI GCNGC 6 cut(s) 28, 67, 101, 494, 515, 518
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 307, 319
Bpu10I CCTNAGC 3 cut(s) 151, 571, 577
BsaBI GATNNNNATC 1 cut(s) 328
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 2 cut(s) 308, 320
BsaXI ACNNNNNCTCC 2 cut(s) 457, 487
Bse1I ACTGG 1 cut(s) 415
Bse8I GATNNNNATC 1 cut(s) 328
BseAI TCCGGA 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 328
BseMII CTCAG 3 cut(s) 165, 585, 591
BseNI ACTGG 1 cut(s) 415
BseRI GAGGAG 8 cut(s) 150, 153, 228, 231, 234, 237, 378, 402
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 3 cut(s) 5, 83, 102
BsiEI CGRYCG 1 cut(s) 103
BsiSI CCGG 2 cut(s) 309, 321
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 3 cut(s) 5, 83, 102
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 2 cut(s) 71, 329
BspANI GGCC 3 cut(s) 5, 83, 102
BspCNI CTCAG 3 cut(s) 164, 584, 590
BspEI TCCGGA 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 307, 319
BspPI GGATC 1 cut(s) 337
BsrI ACTGG 1 cut(s) 415
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 71, 329
BstDEI CTNAG 4 cut(s) 12, 151, 571, 577
BstDSI CCRYGG 1 cut(s) 103
BstKTI GATC 2 cut(s) 74, 332
BstMBI GATC 2 cut(s) 71, 329
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 89, 108, 522
BstV1I GCAGC 1 cut(s) 13
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 3 cut(s) 5, 83, 102
BtgI CCRYGG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 595
BtsIMutI CAGTG 2 cut(s) 408, 595
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 306
CviAII CATG 1 cut(s) 618
DdeI CTNAG 4 cut(s) 12, 151, 571, 577
DpnI GATC 2 cut(s) 73, 331
DpnII GATC 2 cut(s) 71, 329
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 2 cut(s) 3, 100
EagI CGGCCG 1 cut(s) 100
EciI GGCGGA 4 cut(s) 399, 510, 534, 540
EclXI CGGCCG 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 306
Eco52I CGGCCG 1 cut(s) 100
FaeI CATG 1 cut(s) 621
FatI CATG 1 cut(s) 617
FauI CCCGC 1 cut(s) 542
Fnu4HI GCNGC 6 cut(s) 27, 66, 100, 493, 514, 517
Fsp4HI GCNGC 6 cut(s) 27, 66, 100, 493, 514, 517
FspBI CTAG 2 cut(s) 69, 93
GluI GCNGC 6 cut(s) 27, 66, 100, 493, 514, 517
HaeIII GGCC 3 cut(s) 5, 83, 102
HapII CCGG 2 cut(s) 309, 321
Hin1II CATG 1 cut(s) 621
HinfI GANTC 1 cut(s) 611
HpaII CCGG 2 cut(s) 309, 321
HphI GGTGA 1 cut(s) 606
Hpy188III TCNNGA 5 cut(s) 34, 171, 297, 321, 438
HpyAV CCTTC 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 108, 522
HpyF3I CTNAG 4 cut(s) 12, 151, 571, 577
Hsp92II CATG 1 cut(s) 621
Kpn2I TCCGGA 1 cut(s) 320
Kzo9I GATC 2 cut(s) 71, 329
LmnI GCTCC 3 cut(s) 48, 52, 323
Lsp1109I GCAGC 1 cut(s) 13
MaeI CTAG 2 cut(s) 69, 93
MalI GATC 2 cut(s) 73, 331
MboI GATC 2 cut(s) 71, 329
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 18, 342
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 178
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 87, 278
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 309, 321
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 89, 108, 522
NdeII GATC 2 cut(s) 71, 329
NlaIII CATG 1 cut(s) 621
NlaIV GGNNCC 2 cut(s) 307, 319
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 611
PkrI GCNGC 6 cut(s) 28, 67, 101, 494, 515, 518
PspN4I GGNNCC 2 cut(s) 307, 319
PspPI GGNCC 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 158
SaqAI TTAA 2 cut(s) 87, 278
SatI GCNGC 6 cut(s) 27, 66, 100, 493, 514, 517
Sau3AI GATC 2 cut(s) 71, 329
Sau96I GGNCC 1 cut(s) 306
SinI GGWCC 1 cut(s) 306
Sse9I AATT 2 cut(s) 18, 342
SspMI CTAG 2 cut(s) 69, 93
TasI AATT 2 cut(s) 18, 342
TauI GCSGC 5 cut(s) 68, 102, 495, 516, 519
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 2 cut(s) 87, 278
Tru9I TTAA 2 cut(s) 87, 278
TscAI CASTG 2 cut(s) 415, 595
TseI GCWGC 1 cut(s) 26
TspRI CASTG 2 cut(s) 415, 595
VpaK11BI GGWCC 1 cut(s) 306
XmnI GAANNNNTTC 1 cut(s) 178
XspI CTAG 2 cut(s) 69, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.