pycom02g20880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0019259
Physical Location & Seq
Reverse (-)
18912815 .. 18913429
615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g20880.1

Sequence Viewer

Length: 615 bp
ATGGCCAGCACTAGGGTCATTCGTGCTGCGTTCTTGGTTTTGCTCCTTGTGGAGCTCTCCTTTGCTGCTAGATCACCAAAGGCCATTAGGGGTATCGGTGGTGGCGGCGGTGGCGGAGGTGGTGGAGGGGGCGGTTCAGCTTCTGGGTTCGGGTCTGGGCATGGTTTGGGACATGGGTATGGGAGTGGGTCAGAGTATGGTACTAAAGGCGGAAGCGGAGGCGGTGGAGGTGAAGGAGGGGGCGGTGGCGGTGGATATGGTGAAAAAGGTGGTTATGGGTCTGGATATGGGTCCGGTAGTGGCTCTGGTTATGGGTCTGGTGGTGGCAAAGGAGGAGGTGGAGGTGGAGGTGGGGGAGGCGGCGGTGGTGGAGGTGGTGGAGGCTCGAGTGGAGGTGGTGGGTCAGGTTATGGATCCGGTTATGGAAGTGGAAGTGGCTACGGTAGCGGAGGTGGTAAAGGCGGCGGTGCTGGCGGTGGCAGTGGAGGTGGTGGTGGCGGTGGAGGCGGCCATGGTGGTGGCGGTGGAGGCAGCCATGGTGGTGGTAGTGGCTCTGGTTACGGATCGGGTTATGGGTCCGGATATGGTAAAGGAGGTGGAGGTGATTCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

16.52

Weight (kDa)

9.46

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019259)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06591
prunus_persica Prupe.2G093800_v2.0.a1
pyrus_communis pycom02g20880
rosa_chinensis RchiOBHm_Chr1g0335261
rosa_laevigata RLG00000029391
rosa_multiflora Rmu_sc0001790.1_g000004
rosa_roxburghii Rroxscaffold_4G00316110
rosa_samantha Rh1BG111900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 578
AclWI GGATC 3 cut(s) 408, 421, 571
AcoI YGGCCR 2 cut(s) 3, 508
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 12
AluBI AGCT 2 cut(s) 55, 140
AluI AGCT 2 cut(s) 55, 140
Alw21I GWGCWC 1 cut(s) 57
AlwI GGATC 3 cut(s) 408, 421, 571
AlwNI CAGNNNCTG 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 385
Aor13HI TCCGGA 1 cut(s) 578
AoxI GGCC 3 cut(s) 3, 81, 508
ApeKI GCWGC 3 cut(s) 26, 65, 531
AspS9I GGNCC 2 cut(s) 291, 576
AsuHPI GGTGA 5 cut(s) 66, 242, 272, 600, 614
AvaI CYCGRG 1 cut(s) 385
AvaII GGWCC 2 cut(s) 291, 576
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 57
BbvI GCAGC 3 cut(s) 13, 52, 543
BfaI CTAG 2 cut(s) 12, 69
BisI GCNGC 7 cut(s) 27, 66, 106, 361, 463, 508, 532
BlsI GCNGC 7 cut(s) 28, 67, 107, 362, 464, 509, 533
Bme18I GGWCC 2 cut(s) 291, 576
BmeT110I CYCGRG 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 291, 576
BmiI GGNNCC 3 cut(s) 292, 415, 577
BsaJI CCNNGG 2 cut(s) 511, 535
BsaWI WCCGGW 3 cut(s) 293, 416, 578
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 578
BseDI CCNNGG 2 cut(s) 511, 535
BseLI CCNNNNNNNGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 3 cut(s) 13, 52, 543
BshFI GGCC 3 cut(s) 5, 83, 510
BsiHKAI GWGCWC 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 385
BsiSI CCGG 3 cut(s) 294, 417, 579
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 3 cut(s) 5, 83, 510
BsoBI CYCGRG 1 cut(s) 385
Bsp1286I GDGCHC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 3 cut(s) 71, 413, 563
Bsp19I CCATGG 2 cut(s) 511, 535
BspANI GGCC 3 cut(s) 5, 83, 510
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 3 cut(s) 292, 415, 577
BspPI GGATC 3 cut(s) 408, 421, 571
BssECI CCNNGG 2 cut(s) 511, 535
BssMI GATC 3 cut(s) 71, 413, 563
BssT1I CCWWGG 2 cut(s) 511, 535
Bst4CI ACNGT 1 cut(s) 443
BstC8I GCNNGC 2 cut(s) 7, 472
BstDSI CCRYGG 2 cut(s) 511, 535
BstKTI GATC 3 cut(s) 74, 416, 566
BstMBI GATC 3 cut(s) 71, 413, 563
BstMWI GCNNNNNNNGC 5 cut(s) 111, 444, 471, 504, 528
BstV1I GCAGC 3 cut(s) 13, 52, 543
BstX2I RGATCY 1 cut(s) 413
BstXI CCANNNNNNTGG 2 cut(s) 518, 542
BstYI RGATCY 1 cut(s) 413
BsuRI GGCC 3 cut(s) 5, 83, 510
BtgI CCRYGG 2 cut(s) 511, 535
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 2 cut(s) 7, 472
CaiI CAGNNNCTG 1 cut(s) 143
Cfr13I GGNCC 2 cut(s) 291, 576
Csp6I GTAC 1 cut(s) 201
CviAII CATG 5 cut(s) 161, 173, 512, 536, 612
CviQI GTAC 1 cut(s) 201
DpnI GATC 3 cut(s) 73, 415, 565
DpnII GATC 3 cut(s) 71, 413, 563
EaeI YGGCCR 2 cut(s) 3, 508
EciI GGCGGA 2 cut(s) 129, 225
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 511, 535
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 291, 576
Eco53kI GAGCTC 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 385
EcoICRI GAGCTC 1 cut(s) 55
EcoT14I CCWWGG 2 cut(s) 511, 535
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 2 cut(s) 511, 535
FaeI CATG 5 cut(s) 164, 176, 515, 539, 615
FaqI GGGAC 1 cut(s) 183
FatI CATG 5 cut(s) 160, 172, 511, 535, 611
Fnu4HI GCNGC 7 cut(s) 27, 66, 106, 361, 463, 508, 532
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 7 cut(s) 27, 66, 106, 361, 463, 508, 532
FspBI CTAG 2 cut(s) 12, 69
GluI GCNGC 7 cut(s) 27, 66, 106, 361, 463, 508, 532
HaeIII GGCC 3 cut(s) 5, 83, 510
HapII CCGG 3 cut(s) 294, 417, 579
Hin1II CATG 5 cut(s) 164, 176, 515, 539, 615
HinfI GANTC 1 cut(s) 605
HpaII CCGG 3 cut(s) 294, 417, 579
HphI GGTGA 5 cut(s) 66, 242, 272, 600, 614
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 282, 579
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 111, 444, 471, 504, 528
Hsp92II CATG 5 cut(s) 164, 176, 515, 539, 615
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 3 cut(s) 71, 413, 563
LmnI GCTCC 2 cut(s) 48, 52
Lsp1109I GCAGC 3 cut(s) 13, 52, 543
MaeI CTAG 2 cut(s) 12, 69
MaeIII GTNAC 1 cut(s) 557
MalI GATC 3 cut(s) 73, 415, 565
MboI GATC 3 cut(s) 71, 413, 563
MflI RGATCY 1 cut(s) 413
MhlI GDGCHC 1 cut(s) 57
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 177, 516, 540
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 294, 417, 579
MwoI GCNNNNNNNGC 5 cut(s) 111, 444, 471, 504, 528
NcoI CCATGG 2 cut(s) 511, 535
NdeII GATC 3 cut(s) 71, 413, 563
NlaIII CATG 5 cut(s) 164, 176, 515, 539, 615
NlaIV GGNNCC 3 cut(s) 292, 415, 577
PaeR7I CTCGAG 1 cut(s) 385
PfeI GAWTC 1 cut(s) 605
PkrI GCNGC 7 cut(s) 28, 67, 107, 362, 464, 509, 533
Psp124BI GAGCTC 1 cut(s) 57
PspN4I GGNNCC 3 cut(s) 292, 415, 577
PspPI GGNCC 2 cut(s) 291, 576
PspXI VCTCGAGB 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 413
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 3 cut(s) 177, 516, 540
SacI GAGCTC 1 cut(s) 57
SatI GCNGC 7 cut(s) 27, 66, 106, 361, 463, 508, 532
Sau3AI GATC 3 cut(s) 71, 413, 563
Sau96I GGNCC 2 cut(s) 291, 576
SduI GDGCHC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 385
SinI GGWCC 2 cut(s) 291, 576
SlaI CTCGAG 1 cut(s) 385
SmiMI CAYNNNNRTG 3 cut(s) 177, 516, 540
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
SspMI CTAG 2 cut(s) 12, 69
SstI GAGCTC 1 cut(s) 57
StyI CCWWGG 2 cut(s) 511, 535
TaaI ACNGT 1 cut(s) 443
TaqI TCGA 1 cut(s) 386
TauI GCSGC 4 cut(s) 108, 363, 465, 510
TfiI GAWTC 1 cut(s) 605
TscAI CASTG 1 cut(s) 487
TseI GCWGC 3 cut(s) 26, 65, 531
TspGWI ACGGA 1 cut(s) 576
TspRI CASTG 1 cut(s) 487
VpaK11BI GGWCC 2 cut(s) 291, 576
XhoI CTCGAG 1 cut(s) 385
XspI CTAG 2 cut(s) 12, 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.