Rh1BG111900

Glycine-rich cell wall structural protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
19085170 .. 19085643
474 bp
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UTR
Exon/CDS
Intron
Rh1BG111900.1

Sequence Viewer

Length: 474 bp
ATGGCCAACACTAAGGTAATTGGTGCTGCATTCTTGATATTGCTCCTTGTGGAGCTATCCTTTGCGGCTAGATCATTAAAGGCCATTAAAGCTAGTGGCGGCCGTGGTGGTGGTGGCGGTGGCGGTGGAGGTGGAGGAGGAGGAGGGGGTGGCTCAACATCTGGCTCAGGCTCTGGGTATGGTTCGGGAAAAGGTTCAGGGAGTGGTTCGGGGTATGGTAGTAATGGAGGAGGAGGTGGTGGTGGAGGCGAAGGTGGAGGGGGAGGTGGCGGTGGTGGAACGGGTTTAAATGGTGGTTCTGGGTCAGGATATGGGTCCGGTAGTGGCTCCGGATATGGATCAGGGGGAGGAATTGGAAAAGGTGGAGGAGGGGGAGGAGGTGGTGGTGGCGGAGGAGGTGGTGGTGGTGGAGGCACTGGAAATGGTGGGTCTGGTTATGGGTCGGGATATGGAAGTGGAAGTGGAAGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

12.46

Weight (kDa)

9.76

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019259)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g06591
prunus_persica Prupe.2G093800_v2.0.a1
pyrus_communis pycom02g20880
rosa_chinensis RchiOBHm_Chr1g0335261
rosa_laevigata RLG00000029391
rosa_multiflora Rmu_sc0001790.1_g000004
rosa_roxburghii Rroxscaffold_4G00316110
rosa_samantha Rh1BG111900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 329
AciI CCGC 6 cut(s) 65, 99, 117, 123, 270, 390
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 2 cut(s) 3, 100
AluBI AGCT 2 cut(s) 55, 92
AluI AGCT 2 cut(s) 55, 92
AlwI GGATC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 173
Aor13HI TCCGGA 1 cut(s) 329
AoxI GGCC 3 cut(s) 3, 81, 100
ApeKI GCWGC 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 315
AvaII GGWCC 1 cut(s) 315
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 87
BfaI CTAG 2 cut(s) 69, 93
BisI GCNGC 3 cut(s) 27, 66, 100
BlsI GCNGC 3 cut(s) 28, 67, 101
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 316, 328
Bpu10I CCTNAGC 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 103
BsaWI WCCGGW 2 cut(s) 317, 329
Bse1I ACTGG 1 cut(s) 421
Bse8I GATNNNNATC 1 cut(s) 337
BseAI TCCGGA 1 cut(s) 329
BseDI CCNNGG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 337
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 421
BseRI GAGGAG 8 cut(s) 150, 153, 156, 243, 246, 381, 390, 408
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 3 cut(s) 5, 83, 102
BsiEI CGRYCG 1 cut(s) 103
BsiSI CCGG 2 cut(s) 318, 330
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 3 cut(s) 5, 83, 102
Bsp13I TCCGGA 1 cut(s) 329
Bsp143I GATC 2 cut(s) 71, 338
BspACI CCGC 6 cut(s) 65, 99, 117, 123, 270, 390
BspANI GGCC 3 cut(s) 5, 83, 102
BspCNI CTCAG 1 cut(s) 179
BspEI TCCGGA 1 cut(s) 329
BspLI GGNNCC 2 cut(s) 316, 328
BspPI GGATC 1 cut(s) 346
BsrI ACTGG 1 cut(s) 421
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 71, 338
BstDEI CTNAG 2 cut(s) 12, 166
BstDSI CCRYGG 1 cut(s) 103
BstKTI GATC 2 cut(s) 74, 341
BstMBI GATC 2 cut(s) 71, 338
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 13
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 3 cut(s) 5, 83, 102
BtgI CCRYGG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 414
CaiI CAGNNNCTG 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 315
DdeI CTNAG 2 cut(s) 12, 166
DpnI GATC 2 cut(s) 73, 340
DpnII GATC 2 cut(s) 71, 338
DraI TTTAAA 1 cut(s) 288
EaeI YGGCCR 2 cut(s) 3, 100
EagI CGGCCG 1 cut(s) 100
EciI GGCGGA 1 cut(s) 405
EclXI CGGCCG 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 315
Eco52I CGGCCG 1 cut(s) 100
FaiI YATR 6 cut(s) 180, 216, 312, 336, 438, 450
Fnu4HI GCNGC 3 cut(s) 27, 66, 100
Fsp4HI GCNGC 3 cut(s) 27, 66, 100
FspBI CTAG 2 cut(s) 69, 93
GluI GCNGC 3 cut(s) 27, 66, 100
HaeIII GGCC 3 cut(s) 5, 83, 102
HapII CCGG 2 cut(s) 318, 330
HpaII CCGG 2 cut(s) 318, 330
Hpy188III TCNNGA 5 cut(s) 34, 186, 306, 330, 444
HpyAV CCTTC 1 cut(s) 245
HpyCH4V TGCA 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 2 cut(s) 12, 166
Kpn2I TCCGGA 1 cut(s) 329
Kzo9I GATC 2 cut(s) 71, 338
LmnI GCTCC 3 cut(s) 48, 52, 332
Lsp1109I GCAGC 1 cut(s) 13
MaeI CTAG 2 cut(s) 69, 93
MalI GATC 2 cut(s) 73, 340
MboI GATC 2 cut(s) 71, 338
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 18, 351
MluNI TGGCCA 1 cut(s) 5
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 193
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 77, 87, 287
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 318, 330
Mva1269I GAATGC 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 71, 338
NlaIV GGNNCC 2 cut(s) 316, 328
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 193
PkrI GCNGC 3 cut(s) 28, 67, 101
PspN4I GGNNCC 2 cut(s) 316, 328
PspPI GGNCC 1 cut(s) 315
PstNI CAGNNNCTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 77, 87, 287
SatI GCNGC 3 cut(s) 27, 66, 100
Sau3AI GATC 2 cut(s) 71, 338
Sau96I GGNCC 1 cut(s) 315
SinI GGWCC 1 cut(s) 315
Sse9I AATT 2 cut(s) 18, 351
SsiI CCGC 6 cut(s) 65, 99, 117, 123, 270, 390
SspMI CTAG 2 cut(s) 69, 93
TasI AATT 2 cut(s) 18, 351
TauI GCSGC 2 cut(s) 68, 102
Tru1I TTAA 3 cut(s) 77, 87, 287
Tru9I TTAA 3 cut(s) 77, 87, 287
TscAI CASTG 1 cut(s) 421
TseI GCWGC 1 cut(s) 26
TspRI CASTG 1 cut(s) 421
VpaK11BI GGWCC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 193
XspI CTAG 2 cut(s) 69, 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.