Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012407

Physical Location & Seq

Genomic Coordinates Forward (+)

16906271 .. 16910737

Gene Structure 4467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G110700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGAAAAGACGAGGAAGAAATGAGGGGAGAGATTGAGGAGAGGCTGATAAACGAGGAGTACAAGATATGGAAAAAGAACACACCTTTCTTGTACGATCTGGTTATAACCCATGCCCTAGAATGGCCTTCGCTTACAGTCGAGTGGCTTCCGGACCGGGAAGAGCCTCCAGGGAAGGACTATTCTGTGCAGAAGATGATTCTGGGGACCCATACCTCCGAGAACGAGCCTAATTATCTTATGCTTGCTCAGGTACAGCTACCATTGGAGGACGCAGAGAACGATGCTCGCCATTATGATGATGATCGAGCTGAGGTTGGCGGTTTTGGTTGCGCCAATGGCAAGGTGCAAATAATCCAGCAAATAAATCATGATGGAGAGGTTAATCGAGCTCGTTATATGCCTCAGAATCCATTTATTATTGCGACAAAGACCGTCAATGCTGAAGTTTTTGTGTTCGATTATAGCAAACACCCATCTAAGCCTCCTTTAGATGGTGCATGCAGTCCTGACTTGAGGCTGAGGGGCCACAGCACTGAAGGATATGGTTTATCATGGAGTAAGTTCAAGCAGGGTCATTTACTCAGTGGTTCTGATGATGCTCAGATATGCCTGTGGGATATTAACGCGACTCCCAAGAACAAAACCCTTGAGGCTATGCAAATATTTAAGGTTCATGAAGGTGTGGTAGAAGACGTAGCATGGCATTTGAGGCATGAATACTTATTTGGTTCTGTTGGTGATGATCAATACCTTCTTATATGGGATCTCCGGACTCCATCCGTTACCAAGCCTGTCCAATCTGTAGTTGCTCATCAAAGTGAAGTTAACTGTTTGGCATTCAATCCCTTCAATGAATGGGTTGTTGCAACTGGATCCACTGACAAAACTGTTAAGCTGTTTGATCTACGCAAAATCAATACTGCTCTCCACACCTTTGATTGCCATAAGGAGGAGGTTTTCCAAGTCGGTTGGAATCCGAAAAATGAAACTATCTTAGCTTCTTGTTGCCTTGGCAGGCGACTCATGGTGTGGGATCTTAGCAGAATCGATGAAGAGCAGACACCAGAGGATGCTGAAGATGGTCCACCAGAGTTGCTTTTTATTCATGGTGGTCACACCAGTAAAATATCTGATTTTTCGTGGAACCCATGTGAAGATTGGGTTGTTGCTAGTGTTGCTGAAGATAACATACTCCAAATCTGGCAGATGGCCGAGAACATTTACCATGACGAAGATGATTTACCCGAAGAGCCGGCAAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

423

Amino Acids

48.22

Weight (kDa)

4.72

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58230
fragaria_vesca	FvH4_7g08380 FvH4_7g08380
malus_domestica	MD02G1228600.v1.1 MD07G1083900.v1.1
prunus_persica	Prupe.2G110700_v2.0.a1
pyrus_communis	pycom02g19730 pycom07g06780
rosa_chinensis	RchiOBHm_Chr1g0340261
rosa_laevigata	RLG00000029008
rosa_multiflora	Rmu_sc0001836.1_g000007 Rmu_sc0005193.1_g000010
rosa_roxburghii	Rroxscaffold_4G00311130
rosa_rugosa	Rorug01G0164500.1
rosa_samantha	Rh1AG179200 Rh1BG147400 Rh1CG166100 Rh1DG179300
rosa_wichuraiana	Rw1G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AccII	CGCG	1 cut(s)	629
AccIII	TCCGGA	2 cut(s)	151, 771
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	4 cut(s)	774, 870, 883, 1044
AcoI	YGGCCR	1 cut(s)	1212
AcuI	CTGAAG	4 cut(s)	465, 558, 1098, 1203
AfaI	GTAC	3 cut(s)	62, 95, 255
AfiI	CCNNNNNNNGG	3 cut(s)	123, 494, 952
AgsI	TTSAA	3 cut(s)	568, 844, 853
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	711, 743
AluBI	AGCT	5 cut(s)	259, 311, 392, 898, 1001
AluI	AGCT	5 cut(s)	259, 311, 392, 898, 1001
Alw21I	GWGCWC	1 cut(s)	394
AlwI	GGATC	4 cut(s)	774, 870, 883, 1044
Aor13HI	TCCGGA	2 cut(s)	151, 771
AoxI	GGCC	3 cut(s)	125, 526, 1212
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	4 cut(s)	154, 207, 526, 1085
AsuC2I	CCSGG	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	3 cut(s)	154, 207, 1085
BamHI	GGATCC	1 cut(s)	875
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	4 cut(s)	1176, 1208, 1227, 1259
BbsI	GAAGAC	1 cut(s)	699
Bbv12I	GWGCWC	1 cut(s)	394
BbvCI	CCTCAGC	2 cut(s)	312, 521
BccI	CCATC	6 cut(s)	368, 484, 488, 787, 1076, 1204
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	158
BfaI	CTAG	2 cut(s)	119, 1173
BfmI	CTRYAG	1 cut(s)	804
Bme1390I	CCNGG	2 cut(s)	158, 171
Bme18I	GGWCC	3 cut(s)	154, 207, 1085
BmgT120I	GGNCC	4 cut(s)	154, 207, 526, 1085
BmiI	GGNNCC	5 cut(s)	208, 209, 527, 877, 1148
BmrFI	CCNGG	2 cut(s)	158, 171
BmsI	GCATC	3 cut(s)	274, 589, 1063
BpiI	GAAGAC	1 cut(s)	699
BpmI	CTGGAG	1 cut(s)	153
Bpu10I	CCTNAGC	3 cut(s)	249, 312, 521
BpuEI	CTTGAG	2 cut(s)	535, 671
BpuMI	CCSGG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	1050
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	170, 1012
BsaWI	WCCGGW	2 cut(s)	151, 771
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 494, 952
Bse118I	RCCGGY	1 cut(s)	1255
Bse1I	ACTGG	2 cut(s)	877, 1122
Bse8I	GATNNNNATC	1 cut(s)	303
BseAI	TCCGGA	2 cut(s)	151, 771
BseBI	CCWGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	1050
BseDI	CCNNGG	2 cut(s)	170, 1012
BseGI	GGATG	2 cut(s)	779, 1078
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	123, 494, 952
BseMII	CTCAG	6 cut(s)	263, 303, 419, 512, 598, 617
BseNI	ACTGG	2 cut(s)	877, 1122
BseRI	GAGGAG	3 cut(s)	53, 71, 968
BsgI	GTGCAG	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	629
BshFI	GGCC	3 cut(s)	127, 528, 1214
BshVI	ATCGAT	1 cut(s)	1050
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	4 cut(s)	152, 157, 772, 1256
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	3 cut(s)	123, 494, 952
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	839
BsnI	GGCC	3 cut(s)	127, 528, 1214
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	2 cut(s)	151, 771
Bsp143I	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	3 cut(s)	127, 528, 1214
BspCNI	CTCAG	6 cut(s)	262, 304, 418, 513, 597, 616
BspDI	ATCGAT	1 cut(s)	1050
BspEI	TCCGGA	2 cut(s)	151, 771
BspFNI	CGCG	1 cut(s)	629
BspHI	TCATGA	2 cut(s)	370, 676
BspLI	GGNNCC	5 cut(s)	208, 209, 527, 877, 1148
BspPI	GGATC	4 cut(s)	774, 870, 883, 1044
BspQI	GCTCTTC	3 cut(s)	156, 1050, 1245
BsrFI	RCCGGY	1 cut(s)	1255
BsrI	ACTGG	2 cut(s)	877, 1122
BssAI	RCCGGY	1 cut(s)	1255
BssECI	CCNNGG	2 cut(s)	170, 1012
BssMI	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
BssT1I	CCWWGG	1 cut(s)	1012
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	4 cut(s)	139, 436, 833, 892
Bst6I	CTCTTC	3 cut(s)	156, 1050, 1245
BstC8I	GCNNGC	5 cut(s)	246, 289, 502, 1019, 1257
BstF5I	GGATG	2 cut(s)	779, 1078
BstFNI	CGCG	1 cut(s)	629
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	7 cut(s)	100, 307, 748, 769, 878, 907, 1039
BstMBI	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
BstMWI	GCNNNNNNNGC	4 cut(s)	339, 712, 1178, 1261
BstNI	CCWGG	1 cut(s)	171
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	2 cut(s)	156, 169
BstSFI	CTRYAG	1 cut(s)	804
BstUI	CGCG	1 cut(s)	629
BstV2I	GAAGAC	1 cut(s)	699
BstX2I	RGATCY	3 cut(s)	766, 875, 1036
BstYI	RGATCY	3 cut(s)	766, 875, 1036
Bsu15I	ATCGAT	1 cut(s)	1050
BsuRI	GGCC	3 cut(s)	127, 528, 1214
BsuTUI	ATCGAT	1 cut(s)	1050
BtsCI	GGATG	2 cut(s)	779, 1078
BtsIMutI	CAGTG	3 cut(s)	534, 592, 879
Cac8I	GCNNGC	5 cut(s)	246, 289, 502, 1019, 1257
CciI	TCATGA	2 cut(s)	370, 676
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	1255
Cfr13I	GGNCC	4 cut(s)	154, 207, 526, 1085
ClaI	ATCGAT	1 cut(s)	1050
CpoI	CGGWCCG	1 cut(s)	154
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	3 cut(s)	61, 94, 254
CspCI	CAANNNNNGTGG	2 cut(s)	1077, 1112
CspI	CGGWCCG	1 cut(s)	154
CviQI	GTAC	3 cut(s)	61, 94, 254
DpnI	GATC	7 cut(s)	99, 306, 747, 768, 877, 906, 1038
DpnII	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
EaeI	YGGCCR	1 cut(s)	1212
Eam1104I	CTCTTC	3 cut(s)	156, 1050, 1245
EarI	CTCTTC	3 cut(s)	156, 1050, 1245
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	1012
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	3 cut(s)	154, 207, 1085
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	4 cut(s)	465, 558, 1098, 1203
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	1012
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	1012
FaqI	GGGAC	1 cut(s)	220
FbaI	TGATCA	1 cut(s)	745
FokI	GGATG	2 cut(s)	766, 1085
FriOI	GRGCYC	1 cut(s)	394
FspBI	CTAG	2 cut(s)	119, 1173
GlaI	GCGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	3 cut(s)	127, 528, 1214
HapII	CCGG	4 cut(s)	152, 157, 772, 1256
HgaI	GACGC	1 cut(s)	281
HhaI	GCGC	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	7 cut(s)	199, 409, 631, 775, 976, 1023, 1047
HpaI	GTTAAC	1 cut(s)	829
HpaII	CCGG	4 cut(s)	152, 157, 772, 1256
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	2 cut(s)	829, 1088
Hpy188I	TCNGA	6 cut(s)	220, 408, 595, 606, 981, 1135
Hpy188III	TCNNGA	5 cut(s)	152, 371, 509, 677, 772
Hpy8I	GTNNAC	2 cut(s)	829, 1088
HpyAV	CCTTC	6 cut(s)	138, 169, 533, 674, 764, 859
HpyCH4III	ACNGT	4 cut(s)	139, 436, 833, 892
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	6 cut(s)	190, 349, 500, 504, 661, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	339, 712, 1178, 1261
HpySE526I	ACGT	1 cut(s)	696
HspAI	GCGC	1 cut(s)	333
KflI	GGGWCCC	1 cut(s)	207
Kpn2I	TCCGGA	2 cut(s)	151, 771
KroI	GCCGGC	1 cut(s)	1255
KroNI	GCCGGC	1 cut(s)	1257
Ksp22I	TGATCA	1 cut(s)	745
KspAI	GTTAAC	1 cut(s)	829
Kzo9I	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
LguI	GCTCTTC	3 cut(s)	156, 1050, 1245
LweI	GCATC	3 cut(s)	274, 589, 1063
MaeI	CTAG	2 cut(s)	119, 1173
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	784, 1115
MalI	GATC	7 cut(s)	99, 306, 747, 768, 877, 906, 1038
MboI	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
MflI	RGATCY	3 cut(s)	766, 875, 1036
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	1 cut(s)	232
MlyI	GAGTC	3 cut(s)	625, 769, 1017
MmeI	TCCRAC	1 cut(s)	953
MroI	TCCGGA	2 cut(s)	151, 771
MroNI	GCCGGC	1 cut(s)	1255
MseI	TTAA	5 cut(s)	384, 624, 669, 828, 894
MslI	CAYNNNNRTG	3 cut(s)	297, 681, 819
MspI	CCGG	4 cut(s)	152, 157, 772, 1256
MspR9I	CCNGG	2 cut(s)	158, 171
Mva1269I	GAATGC	1 cut(s)	839
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	629
MwoI	GCNNNNNNNGC	4 cut(s)	339, 712, 1178, 1261
NaeI	GCCGGC	1 cut(s)	1257
NciI	CCSGG	1 cut(s)	158
NdeII	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
NgoMIV	GCCGGC	1 cut(s)	1255
NlaIV	GGNNCC	5 cut(s)	208, 209, 527, 877, 1148
NmeAIII	GCCGAG	1 cut(s)	1240
NmuCI	GTSAC	1 cut(s)	1115
NspI	RCATGY	1 cut(s)	504
PaeI	GCATGC	1 cut(s)	504
PagI	TCATGA	2 cut(s)	370, 676
PciSI	GCTCTTC	3 cut(s)	156, 1050, 1245
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PctI	GAATGC	1 cut(s)	839
PdiI	GCCGGC	1 cut(s)	1257
PfeI	GAWTC	4 cut(s)	199, 409, 976, 1047
PleI	GAGTC	3 cut(s)	625, 769, 1017
PpsI	GAGTC	3 cut(s)	625, 769, 1017
PpuMI	RGGWCCY	1 cut(s)	207
PsiI	TTATAA	1 cut(s)	107
Psp124BI	GAGCTC	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	5 cut(s)	208, 209, 527, 877, 1148
PspPI	GGNCC	4 cut(s)	154, 207, 526, 1085
PspPPI	RGGWCCY	1 cut(s)	207
PsuI	RGATCY	3 cut(s)	766, 875, 1036
RsaI	GTAC	3 cut(s)	62, 95, 255
RsaNI	GTAC	3 cut(s)	61, 94, 254
RseI	CAYNNNNRTG	3 cut(s)	297, 681, 819
Rsr2I	CGGWCCG	1 cut(s)	154
RsrII	CGGWCCG	1 cut(s)	154
SacI	GAGCTC	1 cut(s)	394
SapI	GCTCTTC	3 cut(s)	156, 1050, 1245
SaqAI	TTAA	5 cut(s)	384, 624, 669, 828, 894
Sau3AI	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
Sau96I	GGNCC	4 cut(s)	154, 207, 526, 1085
SchI	GAGTC	3 cut(s)	625, 769, 1017
ScrFI	CCNGG	2 cut(s)	158, 171
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	3 cut(s)	274, 589, 1063
SfcI	CTRYAG	1 cut(s)	804
SinI	GGWCC	3 cut(s)	154, 207, 1085
SmiMI	CAYNNNNRTG	3 cut(s)	297, 681, 819
SmlI	CTYRAG	2 cut(s)	514, 650
SmoI	CTYRAG	2 cut(s)	514, 650
SphI	GCATGC	1 cut(s)	504
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	321
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	2 cut(s)	119, 1173
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	2 cut(s)	156, 169
StyI	CCWWGG	1 cut(s)	1012
TaaI	ACNGT	4 cut(s)	139, 436, 833, 892
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	5 cut(s)	141, 307, 388, 459, 1050
TasI	AATT	1 cut(s)	232
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	4 cut(s)	199, 409, 976, 1047
Tru1I	TTAA	5 cut(s)	384, 624, 669, 828, 894
Tru9I	TTAA	5 cut(s)	384, 624, 669, 828, 894
TscAI	CASTG	3 cut(s)	541, 592, 886
TseFI	GTSAC	1 cut(s)	1115
Tsp45I	GTSAC	1 cut(s)	1115
TspDTI	ATGAA	7 cut(s)	665, 693, 732, 870, 1002, 1068, 1097
TspGWI	ACGGA	1 cut(s)	772
TspRI	CASTG	3 cut(s)	541, 592, 886
VpaK11BI	GGWCC	3 cut(s)	154, 207, 1085
XceI	RCATGY	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1158
XspI	CTAG	2 cut(s)	119, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.