Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012407

Physical Location & Seq

Genomic Coordinates Reverse (-)

17663957 .. 17668038

Gene Structure 4082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGCAAAGACGACGAAGAAATGAGGGGAGAGATAGAGGAGCGGCTGATAAACGAGGAGTACAAGATATGGAAGAAGAACACACCGTTTTTGTACGATCTGGTCATAACCCATGCCTTAGAATGGCCGTCGCTTACGGTGGAGTGGCTTCCCGACCGAGAAGAGCCTCCGGGGAAGGACTATTCGGTGCAGAAGATGATTTTGGGGACCCACACCTCCGAGAACGAGCCAAATTACCTTATGCTTGCTCAGGTCCAGTTGCCATTGGAGGATGCCGAGAACGATGCTCGCCATTATGACGATGATCGAGCAGAGGTTGGCGGTTTCGGTTGCGCCAATGGAAAGGTGCAAATAATCCAGCAAATAAATCATGATGGAGAGGTTAATCGGGCTCGATATATGCCTCAGAATCCATTTATTATTGCCACAAAGACTGTTAATGCTGAAGTTTTTGTGTTCGATTATAGCAAACATCCATCGAAGCCTCCATTGGATGGTGCATGCAGTCCTGATTTGAGGCTGAGGGGCCACAGCACTGAAGGATATGGTTTATCGTGGAGTAAGTTCAAGCAGGGTCATTTACTCAGTGGTTCGGATGATGCTCAGATATGCCTGTGGGACATTAATGCGACTGCTAAGAACAAAACTCTTGAAGCTATGCAGATATTTAAGGTTCATGAAGGTGTTGTGGAAGATGTAGCATGGCATTTGAGGCATGAATACTTATTTGGTTCTGTTGGTGATGATCAATACCTTCTCATATGGGATCTCCGGACTCCATCAGTTACCAAGCCTGTCCAATCTGTGGTTGCTCATCAGAGTGAGGTTAACTGTTTGGCTTTCAATCCCTTCAATGAATGGGTTGTTGCAACTGGATCGACTGACAAAACTGTTAAGCTGTTTGATCTACGCAAAATCAATACTGCACTCCACACCTTTGATTGCCATAAGGAGGAGGTTTTCCAAGTCGGTTGGAATCCAAAGAATGAAACTATCTTAGCTTCATGTTGTCTTGGTAGGAGACTCATGGTTTGGGATCTTAGCAGAATTGATGAAGAGCAGACACCAGAGGATGCAGAAGACGGCCCCCCAGAGTTGCTTTTTATTCATGGGGGTCACACCAGTAAAATATCTGATTTTTCGTGGAACCCGTGTGAAGATTGGGTTATTTCTAGCGTGGCTGAAGATAACATACTCCAGATTTGGCAGATGGCAGAGAACATTTACCATGACGAAGATGATTTACCTGAAGAACCGGCAAAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

CAF1C_H4-bd WD40

Protein Analysis

423

Amino Acids

48.21

Weight (kDa)

4.72

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012407)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58230
fragaria_vesca	FvH4_7g08380 FvH4_7g08380
malus_domestica	MD02G1228600.v1.1 MD07G1083900.v1.1
prunus_persica	Prupe.2G110700_v2.0.a1
pyrus_communis	pycom02g19730 pycom07g06780
rosa_chinensis	RchiOBHm_Chr1g0340261
rosa_laevigata	RLG00000029008
rosa_multiflora	Rmu_sc0001836.1_g000007 Rmu_sc0005193.1_g000010
rosa_roxburghii	Rroxscaffold_4G00311130
rosa_rugosa	Rorug01G0164500.1
rosa_samantha	Rh1AG179200 Rh1BG147400 Rh1CG166100 Rh1DG179300
rosa_wichuraiana	Rw1G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	494, 805
AccBSI	CCGCTC	1 cut(s)	43
AccIII	TCCGGA	1 cut(s)	771
AciI	CCGC	2 cut(s)	43, 321
AclWI	GGATC	3 cut(s)	774, 883, 1044
AcoI	YGGCCR	1 cut(s)	125
AcuI	CTGAAG	4 cut(s)	465, 558, 1203, 1269
AfaI	GTAC	2 cut(s)	62, 95
AfiI	CCNNNNNNNGG	4 cut(s)	123, 494, 805, 952
AgsI	TTSAA	4 cut(s)	568, 653, 844, 853
AjuI	GAANNNNNNNTTGG	6 cut(s)	185, 217, 473, 505, 711, 743
AluBI	AGCT	3 cut(s)	656, 898, 1001
AluI	AGCT	3 cut(s)	656, 898, 1001
Alw26I	GTCTC	1 cut(s)	1015
AlwI	GGATC	3 cut(s)	774, 883, 1044
Aor13HI	TCCGGA	1 cut(s)	771
AoxI	GGCC	3 cut(s)	125, 526, 1084
ArsI	GACNNNNNNTTYG	2 cut(s)	1014, 1046
AseI	ATTAAT	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	4 cut(s)	207, 253, 526, 1085
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	2 cut(s)	207, 253
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	4 cut(s)	1176, 1208, 1227, 1259
BbsI	GAAGAC	1 cut(s)	1086
BbvCI	CCTCAGC	1 cut(s)	521
BccI	CCATC	5 cut(s)	368, 484, 488, 787, 1204
BceAI	ACGGC	2 cut(s)	112, 1099
BcgI	CGANNNNNNTGC	4 cut(s)	266, 300, 858, 892
BclI	TGATCA	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	1015
BfaI	CTAG	1 cut(s)	1173
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	2 cut(s)	207, 253
BmgT120I	GGNCC	4 cut(s)	207, 253, 526, 1085
BmiI	GGNNCC	5 cut(s)	208, 209, 527, 1087, 1148
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	4 cut(s)	262, 274, 589, 1063
BpiI	GAAGAC	1 cut(s)	1086
BpmI	CTGGAG	1 cut(s)	1181
Bpu10I	CCTNAGC	2 cut(s)	249, 521
BpuMI	CCSGG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	1 cut(s)	771
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 494, 805, 952
Bse118I	RCCGGY	1 cut(s)	1255
Bse1I	ACTGG	3 cut(s)	256, 877, 1122
BseAI	TCCGGA	1 cut(s)	771
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	5 cut(s)	277, 472, 499, 601, 1078
BseLI	CCNNNNNNNGG	4 cut(s)	123, 494, 805, 952
BseMII	CTCAG	5 cut(s)	263, 419, 512, 598, 617
BseNI	ACTGG	3 cut(s)	256, 877, 1122
BseRI	GAGGAG	3 cut(s)	53, 71, 968
BsgI	GTGCAG	2 cut(s)	209, 909
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	127, 528, 1086
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	3 cut(s)	170, 772, 1256
BslFI	GGGAC	2 cut(s)	220, 632
BslI	CCNNNNNNNGG	4 cut(s)	123, 494, 805, 952
BsmAI	GTCTC	1 cut(s)	1015
BsmFI	GGGAC	2 cut(s)	220, 632
BsnI	GGCC	3 cut(s)	127, 528, 1086
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	771
Bsp143I	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
BspACI	CCGC	2 cut(s)	43, 321
BspANI	GGCC	3 cut(s)	127, 528, 1086
BspCNI	CTCAG	5 cut(s)	262, 418, 513, 597, 616
BspEI	TCCGGA	1 cut(s)	771
BspHI	TCATGA	2 cut(s)	370, 676
BspLI	GGNNCC	5 cut(s)	208, 209, 527, 1087, 1148
BspPI	GGATC	3 cut(s)	774, 883, 1044
BspQI	GCTCTTC	2 cut(s)	156, 1050
BsrBI	CCGCTC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	1255
BsrI	ACTGG	3 cut(s)	256, 877, 1122
BssAI	RCCGGY	1 cut(s)	1255
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
Bst4CI	ACNGT	5 cut(s)	87, 139, 436, 833, 892
Bst6I	CTCTTC	2 cut(s)	156, 1050
BstC8I	GCNNGC	3 cut(s)	246, 289, 502
BstF5I	GGATG	5 cut(s)	277, 472, 499, 601, 1078
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	7 cut(s)	100, 307, 748, 769, 878, 907, 1039
BstMAI	GTCTC	1 cut(s)	1015
BstMBI	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
BstMCI	CGRYCG	1 cut(s)	157
BstMWI	GCNNNNNNNGC	1 cut(s)	712
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	1086
BstX2I	RGATCY	2 cut(s)	766, 1036
BstYI	RGATCY	2 cut(s)	766, 1036
BsuRI	GGCC	3 cut(s)	127, 528, 1086
BtsCI	GGATG	5 cut(s)	277, 472, 499, 601, 1078
BtsIMutI	CAGTG	2 cut(s)	534, 592
Cac8I	GCNNGC	3 cut(s)	246, 289, 502
CciI	TCATGA	2 cut(s)	370, 676
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	1255
Cfr13I	GGNCC	4 cut(s)	207, 253, 526, 1085
Csp6I	GTAC	2 cut(s)	61, 94
CviQI	GTAC	2 cut(s)	61, 94
DpnI	GATC	7 cut(s)	99, 306, 747, 768, 877, 906, 1038
DpnII	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
EaeI	YGGCCR	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	156, 1050
EarI	CTCTTC	2 cut(s)	156, 1050
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	2 cut(s)	207, 253
Eco57I	CTGAAG	4 cut(s)	465, 558, 1203, 1269
EcoO109I	RGGNCCY	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	394
FaqI	GGGAC	2 cut(s)	220, 632
FauNDI	CATATG	1 cut(s)	761
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	5 cut(s)	284, 459, 506, 608, 1085
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	1173
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	1181
HaeIII	GGCC	3 cut(s)	127, 528, 1086
HapII	CCGG	3 cut(s)	170, 772, 1256
HhaI	GCGC	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HinfI	GANTC	4 cut(s)	409, 775, 976, 1023
HpaI	GTTAAC	1 cut(s)	829
HpaII	CCGG	3 cut(s)	170, 772, 1256
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	829
Hpy188I	TCNGA	6 cut(s)	220, 408, 595, 606, 819, 1135
Hpy188III	TCNNGA	7 cut(s)	152, 371, 509, 650, 677, 772, 1198
Hpy8I	GTNNAC	1 cut(s)	829
Hpy99I	CGWCG	2 cut(s)	17, 133
HpyAV	CCTTC	5 cut(s)	169, 533, 674, 764, 859
HpyCH4III	ACNGT	5 cut(s)	87, 139, 436, 833, 892
HpyCH4V	TGCA	8 cut(s)	190, 349, 500, 504, 661, 869, 926, 1076
HpyF10VI	GCNNNNNNNGC	1 cut(s)	712
HspAI	GCGC	1 cut(s)	333
KflI	GGGWCCC	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	745
KspAI	GTTAAC	1 cut(s)	829
Kzo9I	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
LguI	GCTCTTC	2 cut(s)	156, 1050
LmnI	GCTCC	1 cut(s)	40
LweI	GCATC	4 cut(s)	262, 274, 589, 1063
MaeI	CTAG	1 cut(s)	1173
MaeIII	GTNAC	2 cut(s)	784, 1115
MalI	GATC	7 cut(s)	99, 306, 747, 768, 877, 906, 1038
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
MflI	RGATCY	2 cut(s)	766, 1036
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	2 cut(s)	232, 1047
MlyI	GAGTC	2 cut(s)	769, 1017
MmeI	TCCRAC	1 cut(s)	953
MroI	TCCGGA	1 cut(s)	771
MseI	TTAA	6 cut(s)	384, 438, 624, 669, 828, 894
MslI	CAYNNNNRTG	2 cut(s)	681, 819
MspI	CCGG	3 cut(s)	170, 772, 1256
MspR9I	CCNGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	712
NciI	CCSGG	1 cut(s)	171
NdeI	CATATG	1 cut(s)	761
NdeII	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
NlaIV	GGNNCC	5 cut(s)	208, 209, 527, 1087, 1148
NmeAIII	GCCGAG	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	1115
NspI	RCATGY	1 cut(s)	504
PaeI	GCATGC	1 cut(s)	504
PagI	TCATGA	2 cut(s)	370, 676
PciSI	GCTCTTC	2 cut(s)	156, 1050
PcsI	WCGNNNNNNNCGW	1 cut(s)	1148
PfeI	GAWTC	2 cut(s)	409, 976
PflMI	CCANNNNNTGG	2 cut(s)	494, 805
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	2 cut(s)	769, 1017
PpsI	GAGTC	2 cut(s)	769, 1017
PpuMI	RGGWCCY	1 cut(s)	207
PshBI	ATTAAT	1 cut(s)	624
Psp5II	RGGWCCY	1 cut(s)	207
PspN4I	GGNNCC	5 cut(s)	208, 209, 527, 1087, 1148
PspPI	GGNCC	4 cut(s)	207, 253, 526, 1085
PspPPI	RGGWCCY	1 cut(s)	207
PsuI	RGATCY	2 cut(s)	766, 1036
RsaI	GTAC	2 cut(s)	62, 95
RsaNI	GTAC	2 cut(s)	61, 94
RseI	CAYNNNNRTG	2 cut(s)	681, 819
SapI	GCTCTTC	2 cut(s)	156, 1050
SaqAI	TTAA	6 cut(s)	384, 438, 624, 669, 828, 894
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	7 cut(s)	97, 304, 745, 766, 875, 904, 1036
Sau96I	GGNCC	4 cut(s)	207, 253, 526, 1085
SchI	GAGTC	2 cut(s)	769, 1017
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	4 cut(s)	262, 274, 589, 1063
SinI	GGWCC	2 cut(s)	207, 253
SmiMI	CAYNNNNRTG	2 cut(s)	681, 819
SphI	GCATGC	1 cut(s)	504
Sse9I	AATT	2 cut(s)	232, 1047
SsiI	CCGC	2 cut(s)	43, 321
SspMI	CTAG	1 cut(s)	1173
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	5 cut(s)	87, 139, 436, 833, 892
TaqI	TCGA	5 cut(s)	307, 394, 459, 479, 878
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	232, 1047
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	409, 976
Tru1I	TTAA	6 cut(s)	384, 438, 624, 669, 828, 894
Tru9I	TTAA	6 cut(s)	384, 438, 624, 669, 828, 894
TscAI	CASTG	2 cut(s)	541, 592
TseFI	GTSAC	1 cut(s)	1115
Tsp45I	GTSAC	1 cut(s)	1115
TspDTI	ATGAA	8 cut(s)	665, 693, 732, 870, 993, 1002, 1068, 1097
TspRI	CASTG	2 cut(s)	541, 592
Van91I	CCANNNNNTGG	2 cut(s)	494, 805
VpaK11BI	GGWCC	2 cut(s)	207, 253
VspI	ATTAAT	1 cut(s)	624
XceI	RCATGY	1 cut(s)	504
XspI	CTAG	1 cut(s)	1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.