Rh1AG179200

msi1, mee70, atmsi1 msi1 (multicopy supressor of ira1)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
34032214 .. 34038279
6066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG179200.1

Sequence Viewer

Length: 1050 bp
ATGGGCAAAGACGACGAGGAGATGCGGGGCGAGATTGAGGAGAGGCTAGTCAACGAGGAGTACAAGATATGGAAGAAGAACACTCCCTTTCTCTACGATCTGGTCATAACTCACGCCCTGGAGTGGCCGTCCCTCACCGTCGAGTGGCTGCCGGACCGGGAGGAGCCGCCGGGGAAGGACTACTCGGTGCAGAAGATGATATTGGGGACGCACACCTCGGAAAATGAGCCCAATTATCTTATGCTCGCGCAGGTCCAGCTGCCGTTGGAGGACGCGGAGAACGATGCTCGTAATTATGACGATGATCGTGCCGAGGCTGGAGGTTTCGGCTGCGCTAATGGCAAGGTGCAAATAATCCAGCAAATAAACCATGATGGAGAGGTTAATCGGGCTCGTTATATGCCTCAGAATCCATTTATTATTGCCACAAAAACTGTCAGTGCTGAAGTTTTTGTGTTTGATTATAGCAAACACCCATCTAAGCCTCCTTTAGATGGTGCATGCAGTCCTGATTTGAGGCTCAGGGGTCATAGCACTGAAGGATATGGTTTATCATGGAGTAAGTTCAAGCAGGGTCATTTACTCAGTGGTTCTGATGATGCGCAAATATGTTTGTGGGATATCAATGCAAATTCTAAGAACAAGACCCTGGAGGCTACTCAGATATTTAAGGTCCACGAAGGTGTTGTAGAAGATGTAGCATGGCATTTGAGGCATGAATATTTATTCGGTTCTGTTGGTGATGATCAATACCTTCTGATATGGGATCTCCGGACTCCATCAGTTACCAAGCCTGTCCAATCTGTAGTTGCTCATCAAAGTGAGGTCAACTGTTTGGCTTTCAATCCCTTTAATGAATGGGTGGTTGCAACTGGGTCCACTGACAAAACTGTCAAGCTGTTTGATCTACGCAAAATCAGTACCGCTCTCCACACCTTTGATTGCCATAAGGAGGAGGTTTTCCAAGTCGGTTGGAATCCGAAGAATGAGACTATCTTAGCTTCTTGTTGTCTTGGCAGGAGACTGATGGTGTGGGATCTTAGCAGGTAA

Protein Analysis

349

Amino Acids

39.77

Weight (kDa)

5.15

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAF1C_H4-bd PF12265 19 - 88 1.3e-31 Histone-binding protein RBBP4 or subunit C of CAF1 complex
Beta-prop_THOC3 PF25174 115 - 219 2.6e-06 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 123 - 288 1.1e-12 WDR3 first beta-propeller domain
Beta-prop_CAF1B_HIR1 PF24105 173 - 263 6.7e-09 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 174 - 347 5.7e-16 Prp19 WD40 domain
WD40_CDC20-Fz PF24807 175 - 346 4.6e-19 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 177 - 331 4.4e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 178 - 267 8.1e-12 THOC3 beta-propeller domain
WD40_Gbeta PF25391 181 - 306 1.5e-09 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 191 - 348 1.1e-10 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 194 - 302 4e-06 WDR3 second beta-propeller domain
WDR55 PF24796 214 - 346 5.5e-10 WDR55
Beta-prop_WDR5 PF25175 216 - 348 7.9e-20 WDR5 beta-propeller domain
Beta-prop_EIPR1 PF23609 226 - 301 2.6e-11 EIPR1 beta-propeller
Beta-prop_EML PF23409 252 - 345 4.7e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40 PF00400 264 - 302 5.2e-09 WD domain, G-beta repeat
Beta-prop_WDR3_1st PF25173 266 - 347 9.9e-11 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 267 - 348 7.8e-06 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 270 - 348 1.8e-07 WDHD1 first WD40 domain
Beta-prop_THOC3 PF25174 272 - 347 9.5e-13 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012407)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 890
Acc16I TGCGCA 1 cut(s) 603
Acc36I ACCTGC 2 cut(s) 241, 1035
AccBSI CCGCTC 1 cut(s) 926
AccII CGCG 2 cut(s) 248, 275
AccIII TCCGGA 1 cut(s) 771
AciI CCGC 4 cut(s) 25, 167, 275, 924
AclWI GGATC 2 cut(s) 774, 1044
AcoI YGGCCR 1 cut(s) 125
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 2 cut(s) 465, 558
AfaI GTAC 2 cut(s) 62, 922
AfiI CCNNNNNNNGG 4 cut(s) 123, 144, 494, 952
AgsI TTSAA 2 cut(s) 568, 844
AjnI CCWGG 2 cut(s) 117, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 3 cut(s) 259, 898, 1001
AluI AGCT 3 cut(s) 259, 898, 1001
Alw26I GTCTC 2 cut(s) 983, 1015
AlwI GGATC 2 cut(s) 774, 1044
Aor13HI TCCGGA 1 cut(s) 771
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 3 cut(s) 148, 259, 330
ApoI RAATTY 1 cut(s) 631
AspLEI GCGC 3 cut(s) 250, 335, 604
AspS9I GGNCC 4 cut(s) 154, 253, 673, 876
AsuC2I CCSGG 2 cut(s) 158, 171
AsuHPI GGTGA 2 cut(s) 127, 752
AvaII GGWCC 4 cut(s) 154, 253, 673, 876
BanII GRGCYC 2 cut(s) 231, 394
BbvI GCAGC 3 cut(s) 135, 246, 317
BccI CCATC 5 cut(s) 368, 484, 488, 787, 1021
BceAI ACGGC 2 cut(s) 112, 247
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 2 cut(s) 119, 650
BclI TGATCA 1 cut(s) 745
BcnI CCSGG 2 cut(s) 158, 171
BcoDI GTCTC 2 cut(s) 983, 1015
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 804
BfuAI ACCTGC 2 cut(s) 241, 1035
BisI GCNGC 4 cut(s) 149, 167, 260, 331
BlsI GCNGC 4 cut(s) 150, 168, 261, 332
Bme1390I CCNGG 4 cut(s) 119, 158, 171, 650
Bme18I GGWCC 4 cut(s) 154, 253, 673, 876
BmgT120I GGNCC 4 cut(s) 154, 253, 673, 876
BmiI GGNNCC 2 cut(s) 165, 877
BmrFI CCNGG 4 cut(s) 119, 158, 171, 650
BmrI ACTGGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 12, 274, 589
BmuI ACTGGG 1 cut(s) 882
BpmI CTGGAG 3 cut(s) 140, 339, 671
Bpu10I CCTNAGC 1 cut(s) 521
BpuMI CCSGG 2 cut(s) 158, 171
BsaJI CCNNGG 5 cut(s) 117, 170, 216, 312, 648
BsaWI WCCGGW 1 cut(s) 771
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 123, 144, 494, 952
Bse1I ACTGG 1 cut(s) 877
BseAI TCCGGA 1 cut(s) 771
BseBI CCWGG 2 cut(s) 119, 650
BseDI CCNNGG 5 cut(s) 117, 170, 216, 312, 648
BseLI CCNNNNNNNGG 4 cut(s) 123, 144, 494, 952
BseMII CTCAG 4 cut(s) 419, 535, 598, 674
BseNI ACTGG 1 cut(s) 877
BseRI GAGGAG 5 cut(s) 32, 53, 71, 176, 968
BseXI GCAGC 3 cut(s) 135, 246, 317
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 2 cut(s) 248, 275
BshFI GGCC 1 cut(s) 127
BsiSI CCGG 4 cut(s) 152, 157, 170, 772
BslFI GGGAC 2 cut(s) 115, 220
BslI CCNNNNNNNGG 4 cut(s) 123, 144, 494, 952
BsmAI GTCTC 2 cut(s) 983, 1015
BsmFI GGGAC 2 cut(s) 115, 220
BsnI GGCC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 231, 394
Bsp13I TCCGGA 1 cut(s) 771
Bsp143I GATC 6 cut(s) 97, 304, 745, 766, 904, 1036
BspACI CCGC 4 cut(s) 25, 167, 275, 924
BspANI GGCC 1 cut(s) 127
BspCNI CTCAG 4 cut(s) 418, 534, 597, 673
BspEI TCCGGA 1 cut(s) 771
BspFNI CGCG 2 cut(s) 248, 275
BspLI GGNNCC 2 cut(s) 165, 877
BspMI ACCTGC 2 cut(s) 241, 1035
BspPI GGATC 2 cut(s) 774, 1044
BsrBI CCGCTC 1 cut(s) 926
BsrI ACTGG 1 cut(s) 877
BssECI CCNNGG 5 cut(s) 117, 170, 216, 312, 648
BssMI GATC 6 cut(s) 97, 304, 745, 766, 904, 1036
Bst2UI CCWGG 2 cut(s) 119, 650
Bst4CI ACNGT 4 cut(s) 139, 436, 833, 892
BstC8I GCNNGC 2 cut(s) 246, 502
BstDEI CTNAG 8 cut(s) 405, 480, 521, 584, 636, 660, 997, 1040
BstFNI CGCG 2 cut(s) 248, 275
BstHHI GCGC 3 cut(s) 250, 335, 604
BstKTI GATC 6 cut(s) 100, 307, 748, 769, 907, 1039
BstMAI GTCTC 2 cut(s) 983, 1015
BstMBI GATC 6 cut(s) 97, 304, 745, 766, 904, 1036
BstMWI GCNNNNNNNGC 3 cut(s) 256, 339, 712
BstNI CCWGG 2 cut(s) 119, 650
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 4 cut(s) 117, 156, 169, 648
BstSFI CTRYAG 1 cut(s) 804
BstUI CGCG 2 cut(s) 248, 275
BstV1I GCAGC 3 cut(s) 135, 246, 317
BstX2I RGATCY 2 cut(s) 766, 1036
BstYI RGATCY 2 cut(s) 766, 1036
BsuRI GGCC 1 cut(s) 127
BtsIMutI CAGTG 4 cut(s) 445, 534, 592, 879
BveI ACCTGC 2 cut(s) 241, 1035
Cac8I GCNNGC 2 cut(s) 246, 502
CfoI GCGC 3 cut(s) 250, 335, 604
Cfr13I GGNCC 4 cut(s) 154, 253, 673, 876
CpoI CGGWCCG 1 cut(s) 154
CseI GACGC 2 cut(s) 217, 281
Csp6I GTAC 2 cut(s) 61, 921
CspI CGGWCCG 1 cut(s) 154
CviAII CATG 5 cut(s) 371, 501, 555, 702, 716
CviQI GTAC 2 cut(s) 61, 921
DdeI CTNAG 8 cut(s) 405, 480, 521, 584, 636, 660, 997, 1040
DpnI GATC 6 cut(s) 99, 306, 747, 768, 906, 1038
DpnII GATC 6 cut(s) 97, 304, 745, 766, 904, 1036
DrdI GACNNNNNNGTC 1 cut(s) 890
DseDI GACNNNNNNGTC 1 cut(s) 890
EaeI YGGCCR 1 cut(s) 125
Eco24I GRGCYC 2 cut(s) 231, 394
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 4 cut(s) 154, 253, 673, 876
Eco57I CTGAAG 2 cut(s) 465, 558
EcoRII CCWGG 2 cut(s) 117, 648
EcoRV GATATC 1 cut(s) 622
EcoT38I GRGCYC 2 cut(s) 231, 394
FaeI CATG 5 cut(s) 374, 504, 558, 705, 719
FaqI GGGAC 2 cut(s) 115, 220
FatI CATG 5 cut(s) 370, 500, 554, 701, 715
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 4 cut(s) 149, 167, 260, 331
FriOI GRGCYC 2 cut(s) 231, 394
Fsp4HI GCNGC 4 cut(s) 149, 167, 260, 331
FspBI CTAG 1 cut(s) 47
FspI TGCGCA 1 cut(s) 603
GlaI GCGC 3 cut(s) 249, 334, 603
GluI GCNGC 4 cut(s) 149, 167, 260, 331
GsuI CTGGAG 3 cut(s) 140, 339, 671
HaeIII GGCC 1 cut(s) 127
HapII CCGG 4 cut(s) 152, 157, 170, 772
HgaI GACGC 2 cut(s) 217, 281
HhaI GCGC 3 cut(s) 250, 335, 604
Hin1II CATG 5 cut(s) 374, 504, 558, 705, 719
Hin6I GCGC 3 cut(s) 248, 333, 602
HinP1I GCGC 3 cut(s) 248, 333, 602
HincII GTYRAC 2 cut(s) 52, 829
HindII GTYRAC 2 cut(s) 52, 829
HinfI GANTC 3 cut(s) 409, 775, 976
HpaII CCGG 4 cut(s) 152, 157, 170, 772
HphI GGTGA 2 cut(s) 127, 752
Hpy166II GTNNAC 4 cut(s) 52, 676, 829, 879
Hpy188I TCNGA 6 cut(s) 220, 408, 595, 663, 759, 981
Hpy188III TCNNGA 2 cut(s) 509, 772
Hpy8I GTNNAC 4 cut(s) 52, 676, 829, 879
Hpy99I CGWCG 2 cut(s) 17, 143
HpyAV CCTTC 4 cut(s) 169, 533, 674, 764
HpyCH4III ACNGT 4 cut(s) 139, 436, 833, 892
HpyCH4V TGCA 6 cut(s) 190, 349, 500, 504, 629, 869
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 339, 712
HpyF3I CTNAG 8 cut(s) 405, 480, 521, 584, 636, 660, 997, 1040
Hsp92II CATG 5 cut(s) 374, 504, 558, 705, 719
HspAI GCGC 3 cut(s) 248, 333, 602
Kpn2I TCCGGA 1 cut(s) 771
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 6 cut(s) 97, 304, 745, 766, 904, 1036
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 3 cut(s) 135, 246, 317
LweI GCATC 3 cut(s) 12, 274, 589
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 784
MalI GATC 6 cut(s) 99, 306, 747, 768, 906, 1038
MbiI CCGCTC 1 cut(s) 926
MboI GATC 6 cut(s) 97, 304, 745, 766, 904, 1036
MboII GAAGA 5 cut(s) 85, 88, 205, 704, 994
MflI RGATCY 2 cut(s) 766, 1036
MhlI GDGCHC 2 cut(s) 231, 394
MluCI AATT 3 cut(s) 232, 292, 631
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 2 cut(s) 246, 953
MroI TCCGGA 1 cut(s) 771
MseI TTAA 3 cut(s) 384, 669, 852
MslI CAYNNNNRTG 2 cut(s) 681, 819
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 4 cut(s) 152, 157, 170, 772
MspR9I CCNGG 4 cut(s) 119, 158, 171, 650
MvaI CCWGG 2 cut(s) 119, 650
MvnI CGCG 2 cut(s) 248, 275
MwoI GCNNNNNNNGC 3 cut(s) 256, 339, 712
NciI CCSGG 2 cut(s) 158, 171
NdeII GATC 6 cut(s) 97, 304, 745, 766, 904, 1036
NlaIII CATG 5 cut(s) 374, 504, 558, 705, 719
NlaIV GGNNCC 2 cut(s) 165, 877
NmeAIII GCCGAG 1 cut(s) 337
NsbI TGCGCA 1 cut(s) 603
NspI RCATGY 1 cut(s) 504
OliI CACNNNNGTG 1 cut(s) 681
PaeI GCATGC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 2 cut(s) 409, 976
PkrI GCNGC 4 cut(s) 150, 168, 261, 332
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Psp6I CCWGG 2 cut(s) 117, 648
PspGI CCWGG 2 cut(s) 117, 648
PspN4I GGNNCC 2 cut(s) 165, 877
PspPI GGNCC 4 cut(s) 154, 253, 673, 876
PsuI RGATCY 2 cut(s) 766, 1036
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 2 cut(s) 62, 922
RsaNI GTAC 2 cut(s) 61, 921
RseI CAYNNNNRTG 2 cut(s) 681, 819
Rsr2I CGGWCCG 1 cut(s) 154
RsrII CGGWCCG 1 cut(s) 154
SaqAI TTAA 3 cut(s) 384, 669, 852
SatI GCNGC 4 cut(s) 149, 167, 260, 331
Sau3AI GATC 6 cut(s) 97, 304, 745, 766, 904, 1036
Sau96I GGNCC 4 cut(s) 154, 253, 673, 876
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 4 cut(s) 119, 158, 171, 650
SduI GDGCHC 2 cut(s) 231, 394
SfaNI GCATC 3 cut(s) 12, 274, 589
SfcI CTRYAG 1 cut(s) 804
SinI GGWCC 4 cut(s) 154, 253, 673, 876
SmiMI CAYNNNNRTG 2 cut(s) 681, 819
SphI GCATGC 1 cut(s) 504
Sse9I AATT 3 cut(s) 232, 292, 631
SsiI CCGC 4 cut(s) 25, 167, 275, 924
SspI AATATT 1 cut(s) 722
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 4 cut(s) 117, 156, 169, 648
TaaI ACNGT 4 cut(s) 139, 436, 833, 892
TaqI TCGA 1 cut(s) 141
TasI AATT 3 cut(s) 232, 292, 631
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 2 cut(s) 409, 976
Tru1I TTAA 3 cut(s) 384, 669, 852
Tru9I TTAA 3 cut(s) 384, 669, 852
TscAI CASTG 4 cut(s) 445, 541, 592, 886
TseI GCWGC 3 cut(s) 148, 259, 330
TspDTI ATGAA 2 cut(s) 732, 870
TspRI CASTG 4 cut(s) 445, 541, 592, 886
VpaK11BI GGWCC 4 cut(s) 154, 253, 673, 876
XapI RAATTY 1 cut(s) 631
XceI RCATGY 1 cut(s) 504
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.