Prupe.2G140200_v2.0.a1

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014567
Physical Location & Seq
Forward (+)
19693638 .. 19695879
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G140200.1

Sequence Viewer

Length: 1500 bp
ATGACAGAAATGGATGATGGCTCTTCGAGACCTCCACAAATCTCTGAAATGTTTCAGAAATTCGCTCTCGCTTTCAAGACCAAAACTTTCGAGTTCTTTGCTGAAGAGGAAGCTGAGGACTCCGATAGCTTAGCACTTCTCGACTCTGCTGAAGAGGTCATCACAGACCAGAAGGTCGTCGTCATCAAACCAGACGGAGCAGCGGCGGACCACAAGGACTCACAGCTACAAATTACACCGAAGAAGCCTAATTTGAGCGAAACCCAAGTGAAGAAACCAGAGCTTTCGGCGGTTACAAGGTCTTTGAGCAGAACCCAGATCAGACCTATCAATACCCAGATGACCCAGACTCTGCTTTCGTCGATTTTTGCTACGGTTTCGTCGTTTGAAGCTTCGTACCTTCAATTACAGACTGCCCATGTGCCTTTTGTTGAAGAAAATCTCAAGGCAGCTGATCGAGCTCTGATCTCTCACCTTCAGAGGCTCTCAGAATTCAAGCATTTTTATAGAGATTTTTGTACAAGTTCTAATTTTGGTTCTGATATTCCAATTGGGTCTTGCTTGGAAGCTCAGGTGCAAGAGAATCAGAGCAAGCTTAGGACTTTGGGAACCATGTCCAACAGGTTACAGACAGAGATTGATCAAAAAGACAATGAAGTTATGGCTCTGAGGAAAAAATTGGGTGAGATTCAAAAGTCTAATTTGAAACTATCTAAGAGGTTATCTGCTACTTTGAATTCTCCTTGTGAAGTTTTGTTGTCCGTTAGAGTCTTTGATTCGGTTCTACATGATGCTTGTAGATTAACACACAGATTTACTAAAATTTTGATAACTTTGATGGAGAAAGCTGGGTGGGATTTAGATTTGGCTGCTAATTTAGTTCATCCTGATATTGAGTATGTTAAAAAAGCGCATAACCGGTATGCTTTCTTGTCATATGTTTGTTTGGGAATGTTCAAAGGTTTTGATTCAAAAGGTTTTGGTTTAGATGAGAGTGATATGTTGTGTAATGGGCATGGTCCGGAGTTGGATAAGAATAAGGCTTCTTTGAAGCAATTACTTGAGCACGCGTCAAGCAATCCAATGGAGTTGTTAAGTAGAAATCAAAACTGTGAATTTTCAAGATTTTGTGAGAGCAAGTATCAAGAGATTATCCACCCCACCGTGGAATCTTCAATTTTTAGTAATTTGGATAGAAACCAAGTTGTGTTGAGTTCATGGAGGTCTTTGAGTGTATTCTATGATTCATTCGTTAGCATGGCTAGCTCAATATGGATGCTCCAAAAGTTGGCCTACTCCTTTGATCCAGCGGTTGAGATATTCCAAGTGGAAAGAGGCATAGATTTTTCAATCGTGTATATGGAAGATGTCACTAGGAGATTAATGTTGCCAAGTACAACCAGGATGAAAGTTGGGTTTACAGTGGTTCCGGGTTTTAAGATTGGAAGGACAGTAATTCAATCCCAGGTTTATTTAAGTGGCCTGAAATGTACAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

500

Amino Acids

56.41

Weight (kDa)

6.06

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014567)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60680
fragaria_vesca FvH4_7g11240
malus_domestica MD02G1208300.v1.1 MD07G1117100.v1.1
prunus_persica Prupe.2G140200_v2.0.a1
pyrus_communis pycom02g17060 pycom07g10760
rosa_chinensis RchiOBHm_Chr1g0349381
rosa_laevigata RLG00000028553
rosa_multiflora Rmu_sc0004208.1_g000009
rosa_roxburghii Rroxscaffold_4G00305590
rosa_rugosa Rorug01G0203100
rosa_samantha Rh1AG220500 Rh1BG186500 Rh1CG205600 Rh1DG216000
rosa_wichuraiana Rw1G018750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AccB7I CCANNNNNTGG 1 cut(s) 1288
AccII CGCG 1 cut(s) 1070
AccIII TCCGGA 1 cut(s) 1021
AciI CCGC 4 cut(s) 203, 206, 290, 1310
AclWI GGATC 1 cut(s) 1298
AcsI RAATTY 5 cut(s) 59, 491, 736, 822, 1115
AcuI CTGAAG 3 cut(s) 123, 171, 461
AfaI GTAC 4 cut(s) 398, 520, 1396, 1492
AfiI CCNNNNNNNGG 2 cut(s) 1165, 1288
AflIII ACRYGT 1 cut(s) 1068
AgeI ACCGGT 1 cut(s) 918
AjnI CCWGG 2 cut(s) 1400, 1464
Alw21I GWGCWC 2 cut(s) 463, 1068
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 1298
AlwNI CAGNNNCTG 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 1021
AoxI GGCC 2 cut(s) 1290, 1480
ApeKI GCWGC 3 cut(s) 200, 449, 869
ApoI RAATTY 5 cut(s) 59, 491, 736, 822, 1115
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AseI ATTAAT 1 cut(s) 1382
AsiGI ACCGGT 1 cut(s) 918
Asp700I GAANNNNTTC 1 cut(s) 51
AspLEI GCGC 1 cut(s) 913
AspS9I GGNCC 2 cut(s) 208, 1019
AsuC2I CCSGG 1 cut(s) 1431
AsuHPI GGTGA 2 cut(s) 464, 695
AsuNHI GCTAGC 1 cut(s) 1262
AvaII GGWCC 2 cut(s) 208, 1019
BanII GRGCYC 1 cut(s) 463
Bbv12I GWGCWC 2 cut(s) 463, 1068
BbvCI CCTCAGC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 212, 461, 856
BccI CCATC 2 cut(s) 11, 832
BcgI CGANNNNNNTGC 2 cut(s) 80, 114
BciT130I CCWGG 2 cut(s) 1402, 1466
BclI TGATCA 1 cut(s) 640
BcnI CCSGG 1 cut(s) 1431
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 2 cut(s) 1263, 1374
BisI GCNGC 4 cut(s) 201, 204, 450, 870
BlpI GCTNAGC 1 cut(s) 130
BlsI GCNGC 4 cut(s) 202, 205, 451, 871
Bme1390I CCNGG 3 cut(s) 1402, 1431, 1466
Bme18I GGWCC 2 cut(s) 208, 1019
BmgT120I GGNCC 2 cut(s) 208, 1019
BmiI GGNNCC 2 cut(s) 610, 1428
BmrFI CCNGG 3 cut(s) 1402, 1431, 1466
BmsI GCATC 2 cut(s) 781, 1266
BmtI GCTAGC 1 cut(s) 1266
Bpu10I CCTNAGC 3 cut(s) 114, 570, 596
Bpu1102I GCTNAGC 1 cut(s) 130
BpuEI CTTGAG 2 cut(s) 428, 1082
BpuMI CCSGG 1 cut(s) 1431
BsaI GGTCTC 1 cut(s) 22
BsaJI CCNNGG 2 cut(s) 1164, 1464
BsaWI WCCGGW 2 cut(s) 918, 1021
Bsc4I CCNNNNNNNGG 2 cut(s) 1165, 1288
Bse118I RCCGGY 1 cut(s) 918
BseAI TCCGGA 1 cut(s) 1021
BseBI CCWGG 2 cut(s) 1402, 1466
BseDI CCNNGG 2 cut(s) 1164, 1464
BseGI GGATG 4 cut(s) 19, 883, 1281, 1410
BseLI CCNNNNNNNGG 2 cut(s) 1165, 1288
BseMII CTCAG 4 cut(s) 105, 501, 584, 659
BseXI GCAGC 3 cut(s) 212, 461, 856
BseYI CCCAGC 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 1070
BshFI GGCC 2 cut(s) 1292, 1482
BshTI ACCGGT 1 cut(s) 918
BsiHKAI GWGCWC 2 cut(s) 463, 1068
BsiSI CCGG 3 cut(s) 919, 1022, 1430
BslI CCNNNNNNNGG 2 cut(s) 1165, 1288
BsmAI GTCTC 1 cut(s) 22
BsnI GGCC 2 cut(s) 1292, 1482
Bso31I GGTCTC 1 cut(s) 22
Bsp1286I GDGCHC 2 cut(s) 463, 1068
Bsp13I TCCGGA 1 cut(s) 1021
Bsp1407I TGTACA 2 cut(s) 518, 1490
Bsp143I GATC 5 cut(s) 318, 454, 465, 640, 1303
Bsp1720I GCTNAGC 1 cut(s) 130
BspACI CCGC 4 cut(s) 203, 206, 290, 1310
BspANI GGCC 2 cut(s) 1292, 1482
BspCNI CTCAG 4 cut(s) 106, 500, 583, 660
BspEI TCCGGA 1 cut(s) 1021
BspFNI CGCG 1 cut(s) 1070
BspLI GGNNCC 2 cut(s) 610, 1428
BspOI GCTAGC 1 cut(s) 1266
BspPI GGATC 1 cut(s) 1298
BspQI GCTCTTC 1 cut(s) 28
BspTNI GGTCTC 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 918
BsrGI TGTACA 2 cut(s) 518, 1490
BssAI RCCGGY 1 cut(s) 918
BssECI CCNNGG 2 cut(s) 1164, 1464
BssMI GATC 5 cut(s) 318, 454, 465, 640, 1303
Bst2UI CCWGG 2 cut(s) 1402, 1466
Bst4CI ACNGT 5 cut(s) 376, 1112, 1165, 1423, 1453
Bst6I CTCTTC 3 cut(s) 28, 99, 147
BstAUI TGTACA 2 cut(s) 518, 1490
BstC8I GCNNGC 3 cut(s) 593, 1068, 1264
BstDEI CTNAG 7 cut(s) 114, 130, 487, 570, 596, 668, 714
BstDSI CCRYGG 1 cut(s) 1164
BstF5I GGATG 4 cut(s) 19, 883, 1281, 1410
BstFNI CGCG 1 cut(s) 1070
BstHHI GCGC 1 cut(s) 913
BstKTI GATC 5 cut(s) 321, 457, 468, 643, 1306
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 5 cut(s) 318, 454, 465, 640, 1303
BstMWI GCNNNNNNNGC 2 cut(s) 458, 1263
BstNI CCWGG 2 cut(s) 1402, 1466
BstSCI CCNGG 3 cut(s) 1400, 1429, 1464
BstUI CGCG 1 cut(s) 1070
BstV1I GCAGC 3 cut(s) 212, 461, 856
BsuRI GGCC 2 cut(s) 1292, 1482
BtgI CCRYGG 1 cut(s) 1164
BtsCI GGATG 4 cut(s) 19, 883, 1281, 1410
BtsIMutI CAGTG 1 cut(s) 1428
Cac8I GCNNGC 3 cut(s) 593, 1068, 1264
CaiI CAGNNNCTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 913
Cfr10I RCCGGY 1 cut(s) 918
Cfr13I GGNCC 2 cut(s) 208, 1019
CseI GACGC 1 cut(s) 1059
Csp6I GTAC 4 cut(s) 397, 519, 1395, 1491
CspAI ACCGGT 1 cut(s) 918
CviAII CATG 6 cut(s) 419, 613, 788, 1016, 1218, 1258
CviQI GTAC 4 cut(s) 397, 519, 1395, 1491
DdeI CTNAG 7 cut(s) 114, 130, 487, 570, 596, 668, 714
DpnI GATC 5 cut(s) 320, 456, 467, 642, 1305
DpnII GATC 5 cut(s) 318, 454, 465, 640, 1303
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 3 cut(s) 28, 99, 147
EarI CTCTTC 3 cut(s) 28, 99, 147
EciI GGCGGA 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 461
Eco24I GRGCYC 1 cut(s) 463
Eco31I GGTCTC 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 208, 1019
Eco53kI GAGCTC 1 cut(s) 461
Eco57I CTGAAG 3 cut(s) 123, 171, 461
EcoICRI GAGCTC 1 cut(s) 461
EcoRI GAATTC 2 cut(s) 491, 736
EcoRII CCWGG 2 cut(s) 1400, 1464
EcoT38I GRGCYC 1 cut(s) 463
FaeI CATG 6 cut(s) 422, 616, 791, 1019, 1221, 1261
FatI CATG 6 cut(s) 418, 612, 787, 1015, 1217, 1257
FauNDI CATATG 1 cut(s) 937
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 4 cut(s) 201, 204, 450, 870
FokI GGATG 4 cut(s) 26, 870, 1288, 1417
FriOI GRGCYC 1 cut(s) 463
Fsp4HI GCNGC 4 cut(s) 201, 204, 450, 870
FspBI CTAG 2 cut(s) 1263, 1374
GlaI GCGC 1 cut(s) 912
GluI GCNGC 4 cut(s) 201, 204, 450, 870
GsaI CCCAGC 1 cut(s) 852
HaeIII GGCC 2 cut(s) 1292, 1482
HapII CCGG 3 cut(s) 919, 1022, 1430
HgaI GACGC 1 cut(s) 1059
HhaI GCGC 1 cut(s) 913
Hin1II CATG 6 cut(s) 422, 616, 791, 1019, 1221, 1261
Hin6I GCGC 1 cut(s) 911
HinP1I GCGC 1 cut(s) 911
HindIII AAGCTT 2 cut(s) 390, 593
HpaII CCGG 3 cut(s) 919, 1022, 1430
HphI GGTGA 2 cut(s) 464, 695
Hpy166II GTNNAC 1 cut(s) 1419
Hpy188III TCNNGA 7 cut(s) 27, 76, 140, 887, 1022, 1122, 1145
Hpy8I GTNNAC 1 cut(s) 1419
Hpy99I CGWCG 3 cut(s) 182, 364, 385
HpyAV CCTTC 4 cut(s) 166, 410, 485, 1440
HpyCH4III ACNGT 5 cut(s) 376, 1112, 1165, 1423, 1453
HpyCH4V TGCA 1 cut(s) 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 458, 1263
HpyF3I CTNAG 7 cut(s) 114, 130, 487, 570, 596, 668, 714
Hsp92II CATG 6 cut(s) 422, 616, 791, 1019, 1221, 1261
HspAI GCGC 1 cut(s) 911
Kpn2I TCCGGA 1 cut(s) 1021
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 5 cut(s) 318, 454, 465, 640, 1303
LguI GCTCTTC 1 cut(s) 28
LmnI GCTCC 2 cut(s) 197, 1284
Lsp1109I GCAGC 3 cut(s) 212, 461, 856
LweI GCATC 2 cut(s) 781, 1266
MaeI CTAG 2 cut(s) 1263, 1374
MaeIII GTNAC 3 cut(s) 292, 624, 1369
MalI GATC 5 cut(s) 320, 456, 467, 642, 1305
MboI GATC 5 cut(s) 318, 454, 465, 640, 1303
MboII GAAGA 8 cut(s) 15, 116, 164, 253, 283, 446, 1164, 1376
MfeI CAATTG 1 cut(s) 549
MhlI GDGCHC 2 cut(s) 463, 1068
MluI ACGCGT 1 cut(s) 1068
MlyI GAGTC 5 cut(s) 113, 137, 212, 343, 777
MmeI TCCRAC 2 cut(s) 642, 1008
MnlI CCTC 9 cut(s) 42, 100, 109, 148, 474, 663, 711, 1215, 1328
MroI TCCGGA 1 cut(s) 1021
MroXI GAANNNNTTC 1 cut(s) 51
MseI TTAA 6 cut(s) 803, 903, 1094, 1382, 1437, 1475
MspA1I CMGCKG 3 cut(s) 203, 452, 1310
MspI CCGG 3 cut(s) 919, 1022, 1430
MspR9I CCNGG 3 cut(s) 1402, 1431, 1466
MunI CAATTG 1 cut(s) 549
MvaI CCWGG 2 cut(s) 1402, 1466
MvnI CGCG 1 cut(s) 1070
MwoI GCNNNNNNNGC 2 cut(s) 458, 1263
NciI CCSGG 1 cut(s) 1431
NdeI CATATG 1 cut(s) 937
NdeII GATC 5 cut(s) 318, 454, 465, 640, 1303
NheI GCTAGC 1 cut(s) 1262
NlaIII CATG 6 cut(s) 422, 616, 791, 1019, 1221, 1261
NlaIV GGNNCC 2 cut(s) 610, 1428
NmuCI GTSAC 1 cut(s) 1369
PciSI GCTCTTC 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PdmI GAANNNNTTC 1 cut(s) 51
PfeI GAWTC 6 cut(s) 583, 688, 776, 968, 1169, 1244
PflMI CCANNNNNTGG 1 cut(s) 1288
PinAI ACCGGT 1 cut(s) 918
PkrI GCNGC 4 cut(s) 202, 205, 451, 871
PleI GAGTC 5 cut(s) 113, 137, 212, 343, 776
PpsI GAGTC 5 cut(s) 113, 137, 212, 343, 776
PshBI ATTAAT 1 cut(s) 1382
Psp124BI GAGCTC 1 cut(s) 463
Psp6I CCWGG 2 cut(s) 1400, 1464
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 2 cut(s) 1400, 1464
PspN4I GGNNCC 2 cut(s) 610, 1428
PspPI GGNCC 2 cut(s) 208, 1019
PstNI CAGNNNCTG 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 4 cut(s) 398, 520, 1396, 1492
RsaNI GTAC 4 cut(s) 397, 519, 1395, 1491
SacI GAGCTC 1 cut(s) 463
SapI GCTCTTC 1 cut(s) 28
SaqAI TTAA 6 cut(s) 803, 903, 1094, 1382, 1437, 1475
SatI GCNGC 4 cut(s) 201, 204, 450, 870
Sau3AI GATC 5 cut(s) 318, 454, 465, 640, 1303
Sau96I GGNCC 2 cut(s) 208, 1019
SchI GAGTC 5 cut(s) 113, 137, 212, 343, 777
ScrFI CCNGG 3 cut(s) 1402, 1431, 1466
SduI GDGCHC 2 cut(s) 463, 1068
SfaNI GCATC 2 cut(s) 781, 1266
SinI GGWCC 2 cut(s) 208, 1019
SmlI CTYRAG 2 cut(s) 443, 1061
SmoI CTYRAG 2 cut(s) 443, 1061
SsiI CCGC 4 cut(s) 203, 206, 290, 1310
SspMI CTAG 2 cut(s) 1263, 1374
SstI GAGCTC 1 cut(s) 463
StyD4I CCNGG 3 cut(s) 1400, 1429, 1464
TaaI ACNGT 5 cut(s) 376, 1112, 1165, 1423, 1453
TaqI TCGA 5 cut(s) 26, 90, 141, 362, 457
TatI WGTACW 3 cut(s) 518, 1394, 1490
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 6 cut(s) 583, 688, 776, 968, 1169, 1244
Tru1I TTAA 6 cut(s) 803, 903, 1094, 1382, 1437, 1475
Tru9I TTAA 6 cut(s) 803, 903, 1094, 1382, 1437, 1475
TscAI CASTG 1 cut(s) 1428
TseFI GTSAC 1 cut(s) 1369
TseI GCWGC 3 cut(s) 200, 449, 869
Tsp45I GTSAC 1 cut(s) 1369
TspDTI ATGAA 5 cut(s) 669, 872, 1206, 1236, 1421
TspGWI ACGGA 2 cut(s) 210, 751
TspRI CASTG 1 cut(s) 1428
Van91I CCANNNNNTGG 1 cut(s) 1288
VpaK11BI GGWCC 2 cut(s) 208, 1019
VspI ATTAAT 1 cut(s) 1382
XapI RAATTY 5 cut(s) 59, 491, 736, 822, 1115
XmnI GAANNNNTTC 1 cut(s) 51
XspI CTAG 2 cut(s) 1263, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.