Belongs to the peptidase S8 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01900 |
| malus_domestica | MD02G1196800.v1.1 |
| prunus_persica | Prupe.2G152000_v2.0.a1 |
| pyrus_communis | pycom02g16010 |
| rosa_chinensis | RchiOBHm_Chr1g0351771 |
| rosa_roxburghii | Rroxscaffold_4G00303560 |
| rosa_rugosa | Rorug01G0221300 |
| rosa_samantha | Rh1AG235300 Rh1DG232800 |
| rosa_wichuraiana | Rw1G020480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1968 |
| AarI | CACCTGC | 1 cut(s) | 2149 |
| Acc36I | ACCTGC | 2 cut(s) | 1190, 2149 |
| Acc65I | GGTACC | 1 cut(s) | 544 |
| AccB1I | GGYRCC | 1 cut(s) | 544 |
| AccI | GTMKAC | 3 cut(s) | 803, 900, 1497 |
| AciI | CCGC | 3 cut(s) | 1050, 1929, 2209 |
| AclWI | GGATC | 2 cut(s) | 681, 1898 |
| AcoI | YGGCCR | 4 cut(s) | 503, 774, 1401, 1613 |
| AcsI | RAATTY | 3 cut(s) | 1128, 1546, 2136 |
| AcuI | CTGAAG | 1 cut(s) | 1953 |
| AdeI | CACNNNGTG | 1 cut(s) | 1592 |
| AfaI | GTAC | 3 cut(s) | 546, 1840, 2146 |
| AfeI | AGCGCT | 1 cut(s) | 451 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 555, 1056, 2304, 2305 |
| AflIII | ACRYGT | 1 cut(s) | 511 |
| AgsI | TTSAA | 9 cut(s) | 44, 343, 597, 1136, 1229, 1643, 1689, 1845, 2050 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 907 |
| AhlI | ACTAGT | 1 cut(s) | 1835 |
| AjiI | CACGTC | 1 cut(s) | 1564 |
| AjnI | CCWGG | 4 cut(s) | 522, 1588, 1906, 2038 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2287, 2319 |
| Alw21I | GWGCWC | 1 cut(s) | 1007 |
| Alw26I | GTCTC | 2 cut(s) | 395, 1755 |
| AlwI | GGATC | 2 cut(s) | 681, 1898 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2189 |
| Ama87I | CYCGRG | 1 cut(s) | 540 |
| Aor51HI | AGCGCT | 1 cut(s) | 451 |
| ApaI | GGGCCC | 1 cut(s) | 1813 |
| ApoI | RAATTY | 3 cut(s) | 1128, 1546, 2136 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1288, 1374 |
| Asp718I | GGTACC | 1 cut(s) | 544 |
| AspA2I | CCTAGG | 1 cut(s) | 2198 |
| AspLEI | GCGC | 3 cut(s) | 452, 851, 1513 |
| AspS9I | GGNCC | 6 cut(s) | 1022, 1541, 1556, 1809, 1810, 2267 |
| AsuC2I | CCSGG | 2 cut(s) | 541, 542 |
| AsuHPI | GGTGA | 4 cut(s) | 1379, 2054, 2173, 2237 |
| AsuNHI | GCTAGC | 1 cut(s) | 1076 |
| AvaI | CYCGRG | 1 cut(s) | 540 |
| AvaII | GGWCC | 2 cut(s) | 1556, 2267 |
| AvrII | CCTAGG | 1 cut(s) | 2198 |
| BaeGI | GKGCMC | 1 cut(s) | 1813 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2163, 2196 |
| BalI | TGGCCA | 3 cut(s) | 505, 776, 1615 |
| BanI | GGYRCC | 1 cut(s) | 544 |
| BanII | GRGCYC | 2 cut(s) | 785, 1813 |
| BauI | CACGAG | 1 cut(s) | 693 |
| BbsI | GAAGAC | 1 cut(s) | 1941 |
| Bbv12I | GWGCWC | 1 cut(s) | 1007 |
| BbvCI | CCTCAGC | 2 cut(s) | 267, 1468 |
| BccI | CCATC | 5 cut(s) | 887, 1115, 1442, 1513, 2215 |
| BceAI | ACGGC | 1 cut(s) | 1516 |
| BciT130I | CCWGG | 4 cut(s) | 524, 1590, 1908, 2040 |
| BclI | TGATCA | 2 cut(s) | 63, 1566 |
| BcnI | CCSGG | 2 cut(s) | 541, 542 |
| BcoDI | GTCTC | 2 cut(s) | 395, 1755 |
| BcuI | ACTAGT | 1 cut(s) | 1835 |
| BfaI | CTAG | 7 cut(s) | 1029, 1077, 1536, 1836, 1913, 2142, 2199 |
| BfmI | CTRYAG | 7 cut(s) | 732, 960, 1081, 1197, 1755, 2033, 2172 |
| BfoI | RGCGCY | 1 cut(s) | 453 |
| BfuAI | ACCTGC | 2 cut(s) | 1190, 2149 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 827 |
| BlnI | CCTAGG | 1 cut(s) | 2198 |
| BlpI | GCTNAGC | 4 cut(s) | 784, 1006, 1453, 1714 |
| BmcAI | AGTACT | 2 cut(s) | 1840, 2146 |
| Bme1390I | CCNGG | 6 cut(s) | 524, 541, 542, 1590, 1908, 2040 |
| Bme18I | GGWCC | 2 cut(s) | 1556, 2267 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 907 |
| BmeT110I | CYCGRG | 1 cut(s) | 540 |
| BmgBI | CACGTC | 1 cut(s) | 1564 |
| BmgT120I | GGNCC | 6 cut(s) | 1022, 1541, 1556, 1809, 1810, 2267 |
| BmiI | GGNNCC | 5 cut(s) | 546, 1810, 1811, 1812, 2296 |
| BmrFI | CCNGG | 6 cut(s) | 524, 541, 542, 1590, 1908, 2040 |
| BmsI | GCATC | 2 cut(s) | 836, 2074 |
| BmtI | GCTAGC | 1 cut(s) | 1080 |
| BpiI | GAAGAC | 1 cut(s) | 1941 |
| BpmI | CTGGAG | 1 cut(s) | 1320 |
| Bpu10I | CCTNAGC | 2 cut(s) | 267, 1468 |
| Bpu1102I | GCTNAGC | 4 cut(s) | 784, 1006, 1453, 1714 |
| BpuEI | CTTGAG | 3 cut(s) | 216, 1712, 1981 |
| BpuMI | CCSGG | 2 cut(s) | 541, 542 |
| Bsa29I | ATCGAT | 1 cut(s) | 685 |
| BsaAI | YACGTR | 1 cut(s) | 1447 |
| BsaI | GGTCTC | 1 cut(s) | 1755 |
| BsaJI | CCNNGG | 9 cut(s) | 418, 465, 540, 637, 777, 1055, 1207, 1486, 2198 |
| BsaWI | WCCGGW | 1 cut(s) | 1558 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 555, 1056, 2304, 2305 |
| Bse118I | RCCGGY | 2 cut(s) | 1010, 1399 |
| Bse1I | ACTGG | 4 cut(s) | 789, 1242, 1303, 1995 |
| BseBI | CCWGG | 4 cut(s) | 524, 1590, 1908, 2040 |
| BseCI | ATCGAT | 1 cut(s) | 685 |
| BseDI | CCNNGG | 9 cut(s) | 418, 465, 540, 637, 777, 1055, 1207, 1486, 2198 |
| BseGI | GGATG | 5 cut(s) | 475, 851, 1126, 1434, 2285 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 555, 1056, 2304, 2305 |
| BseNI | ACTGG | 4 cut(s) | 789, 1242, 1303, 1995 |
| BseRI | GAGGAG | 2 cut(s) | 255, 399 |
| BseSI | GKGCMC | 1 cut(s) | 1813 |
| BsgI | GTGCAG | 3 cut(s) | 1569, 1755, 2177 |
| BshNI | GGYRCC | 1 cut(s) | 544 |
| BshVI | ATCGAT | 1 cut(s) | 685 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1007 |
| BsiHKCI | CYCGRG | 1 cut(s) | 540 |
| BsiSI | CCGG | 4 cut(s) | 541, 1011, 1400, 1559 |
| BslFI | GGGAC | 3 cut(s) | 453, 523, 2319 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 555, 1056, 2304, 2305 |
| BsmAI | GTCTC | 2 cut(s) | 395, 1755 |
| BsmFI | GGGAC | 3 cut(s) | 453, 523, 2319 |
| BsmI | GAATGC | 1 cut(s) | 1344 |
| Bso31I | GGTCTC | 1 cut(s) | 1755 |
| BsoBI | CYCGRG | 1 cut(s) | 540 |
| Bsp120I | GGGCCC | 1 cut(s) | 1809 |
| Bsp1286I | GDGCHC | 3 cut(s) | 785, 1007, 1813 |
| Bsp143I | GATC | 5 cut(s) | 63, 178, 686, 1566, 1903 |
| Bsp1720I | GCTNAGC | 4 cut(s) | 784, 1006, 1453, 1714 |
| BspACI | CCGC | 3 cut(s) | 1050, 1929, 2209 |
| BspDI | ATCGAT | 1 cut(s) | 685 |
| BspLI | GGNNCC | 5 cut(s) | 546, 1810, 1811, 1812, 2296 |
| BspMAI | CTGCAG | 3 cut(s) | 736, 1201, 1759 |
| BspMI | ACCTGC | 2 cut(s) | 1190, 2149 |
| BspOI | GCTAGC | 1 cut(s) | 1080 |
| BspPI | GGATC | 2 cut(s) | 681, 1898 |
| BspT107I | GGYRCC | 1 cut(s) | 544 |
| BspTNI | GGTCTC | 1 cut(s) | 1755 |
| BsrFI | RCCGGY | 2 cut(s) | 1010, 1399 |
| BsrI | ACTGG | 4 cut(s) | 789, 1242, 1303, 1995 |
| BssAI | RCCGGY | 2 cut(s) | 1010, 1399 |
| BssECI | CCNNGG | 9 cut(s) | 418, 465, 540, 637, 777, 1055, 1207, 1486, 2198 |
| BssMI | GATC | 5 cut(s) | 63, 178, 686, 1566, 1903 |
| BssNAI | GTATAC | 1 cut(s) | 804 |
| BssSI | CACGAG | 1 cut(s) | 693 |
| BssT1I | CCWWGG | 7 cut(s) | 418, 637, 777, 1055, 1207, 1486, 2198 |
| Bst1107I | GTATAC | 1 cut(s) | 804 |
| Bst2BI | CACGAG | 1 cut(s) | 693 |
| Bst2UI | CCWGG | 4 cut(s) | 524, 1590, 1908, 2040 |
| Bst4CI | ACNGT | 7 cut(s) | 356, 676, 1069, 1355, 1495, 2119, 2191 |
| Bst6I | CTCTTC | 2 cut(s) | 1728, 1978 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 815 |
| BstBAI | YACGTR | 1 cut(s) | 1447 |
| BstC8I | GCNNGC | 6 cut(s) | 760, 832, 1078, 1401, 1637, 2207 |
| BstF5I | GGATG | 5 cut(s) | 475, 851, 1126, 1434, 2285 |
| BstH2I | RGCGCY | 1 cut(s) | 453 |
| BstHHI | GCGC | 3 cut(s) | 452, 851, 1513 |
| BstKTI | GATC | 5 cut(s) | 66, 181, 689, 1569, 1906 |
| BstMAI | GTCTC | 2 cut(s) | 395, 1755 |
| BstMBI | GATC | 5 cut(s) | 63, 178, 686, 1566, 1903 |
| BstNI | CCWGG | 4 cut(s) | 524, 1590, 1908, 2040 |
| BstNSI | RCATGY | 3 cut(s) | 515, 1639, 1883 |
| BstSCI | CCNGG | 6 cut(s) | 522, 539, 540, 1588, 1906, 2038 |
| BstSFI | CTRYAG | 7 cut(s) | 732, 960, 1081, 1197, 1755, 2033, 2172 |
| BstSLI | GKGCMC | 1 cut(s) | 1813 |
| BstSNI | TACGTA | 1 cut(s) | 1447 |
| BstV2I | GAAGAC | 1 cut(s) | 1941 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1709 |
| BstZ17I | GTATAC | 1 cut(s) | 804 |
| Bsu15I | ATCGAT | 1 cut(s) | 685 |
| BsuTUI | ATCGAT | 1 cut(s) | 685 |
| BtrI | CACGTC | 1 cut(s) | 1564 |
| BtsCI | GGATG | 5 cut(s) | 475, 851, 1126, 1434, 2285 |
| BtsI | GCAGTG | 5 cut(s) | 207, 729, 1113, 1506, 2160 |
| BveI | ACCTGC | 2 cut(s) | 1190, 2149 |
| Cac8I | GCNNGC | 6 cut(s) | 760, 832, 1078, 1401, 1637, 2207 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2189 |
| CfoI | GCGC | 3 cut(s) | 452, 851, 1513 |
| Cfr10I | RCCGGY | 2 cut(s) | 1010, 1399 |
| Cfr13I | GGNCC | 6 cut(s) | 1022, 1541, 1556, 1809, 1810, 2267 |
| Cfr9I | CCCGGG | 1 cut(s) | 540 |
| ClaI | ATCGAT | 1 cut(s) | 685 |
| CseI | GACGC | 1 cut(s) | 1394 |
| CsiI | ACCWGGT | 1 cut(s) | 1588 |
| Csp6I | GTAC | 3 cut(s) | 545, 1839, 2145 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1393, 1428 |
| CviAII | CATG | 9 cut(s) | 61, 100, 151, 512, 710, 986, 1636, 1703, 1880 |
| CviQI | GTAC | 3 cut(s) | 545, 1839, 2145 |
| DpnI | GATC | 5 cut(s) | 65, 180, 688, 1568, 1905 |
| DpnII | GATC | 5 cut(s) | 63, 178, 686, 1566, 1903 |
| DraIII | CACNNNGTG | 1 cut(s) | 1592 |
| DriI | GACNNNNNGTC | 1 cut(s) | 907 |
| EaeI | YGGCCR | 4 cut(s) | 503, 774, 1401, 1613 |
| Eam1104I | CTCTTC | 2 cut(s) | 1728, 1978 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 907 |
| EarI | CTCTTC | 2 cut(s) | 1728, 1978 |
| Eco105I | TACGTA | 1 cut(s) | 1447 |
| Eco130I | CCWWGG | 7 cut(s) | 418, 637, 777, 1055, 1207, 1486, 2198 |
| Eco147I | AGGCCT | 2 cut(s) | 830, 1911 |
| Eco24I | GRGCYC | 2 cut(s) | 785, 1813 |
| Eco31I | GGTCTC | 1 cut(s) | 1755 |
| Eco47I | GGWCC | 2 cut(s) | 1556, 2267 |
| Eco47III | AGCGCT | 1 cut(s) | 451 |
| Eco57I | CTGAAG | 1 cut(s) | 1953 |
| Eco88I | CYCGRG | 1 cut(s) | 540 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1022, 1809, 1810 |
| EcoRII | CCWGG | 4 cut(s) | 522, 1588, 1906, 2038 |
| EcoT14I | CCWWGG | 7 cut(s) | 418, 637, 777, 1055, 1207, 1486, 2198 |
| EcoT38I | GRGCYC | 2 cut(s) | 785, 1813 |
| ErhI | CCWWGG | 7 cut(s) | 418, 637, 777, 1055, 1207, 1486, 2198 |
| FaeI | CATG | 9 cut(s) | 64, 103, 154, 515, 713, 989, 1639, 1706, 1883 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1362, 1394 |
| FaqI | GGGAC | 3 cut(s) | 453, 523, 2319 |
| FatI | CATG | 9 cut(s) | 60, 99, 150, 511, 709, 985, 1635, 1702, 1879 |
| FbaI | TGATCA | 2 cut(s) | 63, 1566 |
| FblI | GTMKAC | 3 cut(s) | 803, 900, 1497 |
| FokI | GGATG | 5 cut(s) | 482, 858, 1133, 1421, 2272 |
| FriOI | GRGCYC | 2 cut(s) | 785, 1813 |
| FspBI | CTAG | 7 cut(s) | 1029, 1077, 1536, 1836, 1913, 2142, 2199 |
| GlaI | GCGC | 3 cut(s) | 451, 850, 1512 |
| GsuI | CTGGAG | 1 cut(s) | 1320 |
| HaeII | RGCGCY | 1 cut(s) | 453 |
| HapII | CCGG | 4 cut(s) | 541, 1011, 1400, 1559 |
| HgaI | GACGC | 1 cut(s) | 1394 |
| HhaI | GCGC | 3 cut(s) | 452, 851, 1513 |
| Hin1II | CATG | 9 cut(s) | 64, 103, 154, 515, 713, 989, 1639, 1706, 1883 |
| Hin6I | GCGC | 3 cut(s) | 450, 849, 1511 |
| HinP1I | GCGC | 3 cut(s) | 450, 849, 1511 |
| HincII | GTYRAC | 4 cut(s) | 321, 352, 490, 1885 |
| HindII | GTYRAC | 4 cut(s) | 321, 352, 490, 1885 |
| HindIII | AAGCTT | 4 cut(s) | 517, 611, 1093, 1247 |
| HinfI | GANTC | 8 cut(s) | 27, 173, 209, 498, 527, 663, 698, 751 |
| HpaII | CCGG | 4 cut(s) | 541, 1011, 1400, 1559 |
| HphI | GGTGA | 4 cut(s) | 1379, 2054, 2173, 2237 |
| Hpy188I | TCNGA | 4 cut(s) | 178, 469, 859, 1439 |
| Hpy188III | TCNNGA | 4 cut(s) | 233, 695, 1243, 1536 |
| HpyAV | CCTTC | 8 cut(s) | 41, 569, 1035, 1130, 1223, 1315, 1358, 2067 |
| HpyCH4III | ACNGT | 7 cut(s) | 356, 676, 1069, 1355, 1495, 2119, 2191 |
| HpyCH4IV | ACGT | 2 cut(s) | 1446, 1563 |
| HpySE526I | ACGT | 2 cut(s) | 1446, 1563 |
| Hsp92II | CATG | 9 cut(s) | 64, 103, 154, 515, 713, 989, 1639, 1706, 1883 |
| HspAI | GCGC | 3 cut(s) | 450, 849, 1511 |
| KpnI | GGTACC | 1 cut(s) | 548 |
| KroI | GCCGGC | 1 cut(s) | 1399 |
| KroNI | GCCGGC | 1 cut(s) | 1401 |
| Ksp22I | TGATCA | 2 cut(s) | 63, 1566 |
| Kzo9I | GATC | 5 cut(s) | 63, 178, 686, 1566, 1903 |
| LmnI | GCTCC | 6 cut(s) | 276, 447, 1211, 1331, 1415, 2202 |
| LweI | GCATC | 2 cut(s) | 836, 2074 |
| MabI | ACCWGGT | 1 cut(s) | 1588 |
| MaeI | CTAG | 7 cut(s) | 1029, 1077, 1536, 1836, 1913, 2142, 2199 |
| MaeII | ACGT | 2 cut(s) | 1446, 1563 |
| MalI | GATC | 5 cut(s) | 65, 180, 688, 1568, 1905 |
| MboI | GATC | 5 cut(s) | 63, 178, 686, 1566, 1903 |
| MfeI | CAATTG | 2 cut(s) | 1172, 1815 |
| MhlI | GDGCHC | 3 cut(s) | 785, 1007, 1813 |
| MlsI | TGGCCA | 3 cut(s) | 505, 776, 1615 |
| MluNI | TGGCCA | 3 cut(s) | 505, 776, 1615 |
| MlyI | GAGTC | 5 cut(s) | 21, 167, 521, 672, 692 |
| MmeI | TCCRAC | 5 cut(s) | 480, 1006, 1124, 1285, 2308 |
| Mox20I | TGGCCA | 3 cut(s) | 505, 776, 1615 |
| MroNI | GCCGGC | 1 cut(s) | 1399 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1288, 1374 |
| MscI | TGGCCA | 3 cut(s) | 505, 776, 1615 |
| MseI | TTAA | 4 cut(s) | 122, 1668, 2004, 2214 |
| MslI | CAYNNNNRTG | 3 cut(s) | 844, 1688, 1707 |
| Msp20I | TGGCCA | 3 cut(s) | 505, 776, 1615 |
| MspA1I | CMGCKG | 2 cut(s) | 737, 1931 |
| MspI | CCGG | 4 cut(s) | 541, 1011, 1400, 1559 |
| MspR9I | CCNGG | 6 cut(s) | 524, 541, 542, 1590, 1908, 2040 |
| MunI | CAATTG | 2 cut(s) | 1172, 1815 |
| Mva1269I | GAATGC | 1 cut(s) | 1344 |
| MvaI | CCWGG | 4 cut(s) | 524, 1590, 1908, 2040 |
| NaeI | GCCGGC | 1 cut(s) | 1401 |
| NciI | CCSGG | 2 cut(s) | 541, 542 |
| NdeII | GATC | 5 cut(s) | 63, 178, 686, 1566, 1903 |
| NgoMIV | GCCGGC | 1 cut(s) | 1399 |
| NheI | GCTAGC | 1 cut(s) | 1076 |
| NlaIII | CATG | 9 cut(s) | 64, 103, 154, 515, 713, 989, 1639, 1706, 1883 |
| NlaIV | GGNNCC | 5 cut(s) | 546, 1810, 1811, 1812, 2296 |
| NmeAIII | GCCGAG | 1 cut(s) | 440 |
| NmuCI | GTSAC | 5 cut(s) | 695, 909, 1085, 1579, 2042 |
| NspI | RCATGY | 3 cut(s) | 515, 1639, 1883 |
| PaeI | GCATGC | 1 cut(s) | 1639 |
| PaqCI | CACCTGC | 1 cut(s) | 2149 |
| PceI | AGGCCT | 2 cut(s) | 830, 1911 |
| PciI | ACATGT | 1 cut(s) | 511 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 691 |
| PctI | GAATGC | 1 cut(s) | 1344 |
| PdiI | GCCGGC | 1 cut(s) | 1401 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1288, 1374 |
| PfeI | GAWTC | 3 cut(s) | 209, 498, 751 |
| PfoI | TCCNGGA | 1 cut(s) | 522 |
| PleI | GAGTC | 5 cut(s) | 21, 167, 521, 671, 692 |
| PpsI | GAGTC | 5 cut(s) | 21, 167, 521, 671, 692 |
| Ppu21I | YACGTR | 1 cut(s) | 1447 |
| PscI | ACATGT | 1 cut(s) | 511 |
| PsiI | TTATAA | 1 cut(s) | 1968 |
| Psp6I | CCWGG | 4 cut(s) | 522, 1588, 1906, 2038 |
| PspGI | CCWGG | 4 cut(s) | 522, 1588, 1906, 2038 |
| PspN4I | GGNNCC | 5 cut(s) | 546, 1810, 1811, 1812, 2296 |
| PspOMI | GGGCCC | 1 cut(s) | 1809 |
| PspPI | GGNCC | 6 cut(s) | 1022, 1541, 1556, 1809, 1810, 2267 |
| PstI | CTGCAG | 3 cut(s) | 736, 1201, 1759 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2189 |
| PvuII | CAGCTG | 1 cut(s) | 737 |
| RsaI | GTAC | 3 cut(s) | 546, 1840, 2146 |
| RsaNI | GTAC | 3 cut(s) | 545, 1839, 2145 |
| RseI | CAYNNNNRTG | 3 cut(s) | 844, 1688, 1707 |
| SaqAI | TTAA | 4 cut(s) | 122, 1668, 2004, 2214 |
| Sau3AI | GATC | 5 cut(s) | 63, 178, 686, 1566, 1903 |
| Sau96I | GGNCC | 6 cut(s) | 1022, 1541, 1556, 1809, 1810, 2267 |
| ScaI | AGTACT | 2 cut(s) | 1840, 2146 |
| SchI | GAGTC | 5 cut(s) | 21, 167, 521, 672, 692 |
| ScrFI | CCNGG | 6 cut(s) | 524, 541, 542, 1590, 1908, 2040 |
| SduI | GDGCHC | 3 cut(s) | 785, 1007, 1813 |
| SexAI | ACCWGGT | 1 cut(s) | 1588 |
| SfaNI | GCATC | 2 cut(s) | 836, 2074 |
| SfcI | CTRYAG | 7 cut(s) | 732, 960, 1081, 1197, 1755, 2033, 2172 |
| SinI | GGWCC | 2 cut(s) | 1556, 2267 |
| SmaI | CCCGGG | 1 cut(s) | 542 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 844, 1688, 1707 |
| SmlI | CTYRAG | 3 cut(s) | 231, 1727, 1960 |
| SmoI | CTYRAG | 3 cut(s) | 231, 1727, 1960 |
| SnaBI | TACGTA | 1 cut(s) | 1447 |
| SpeI | ACTAGT | 1 cut(s) | 1835 |
| SphI | GCATGC | 1 cut(s) | 1639 |
| SseBI | AGGCCT | 2 cut(s) | 830, 1911 |
| SsiI | CCGC | 3 cut(s) | 1050, 1929, 2209 |
| SspI | AATATT | 1 cut(s) | 955 |
| SspMI | CTAG | 7 cut(s) | 1029, 1077, 1536, 1836, 1913, 2142, 2199 |
| StuI | AGGCCT | 2 cut(s) | 830, 1911 |
| StyD4I | CCNGG | 6 cut(s) | 522, 539, 540, 1588, 1906, 2038 |
| StyI | CCWWGG | 7 cut(s) | 418, 637, 777, 1055, 1207, 1486, 2198 |
| TaaI | ACNGT | 7 cut(s) | 356, 676, 1069, 1355, 1495, 2119, 2191 |
| TaiI | ACGT | 2 cut(s) | 1449, 1566 |
| TaqI | TCGA | 2 cut(s) | 685, 701 |
| TatI | WGTACW | 2 cut(s) | 1838, 2144 |
| TauI | GCSGC | 1 cut(s) | 1052 |
| TfiI | GAWTC | 3 cut(s) | 209, 498, 751 |
| Tru1I | TTAA | 4 cut(s) | 122, 1668, 2004, 2214 |
| Tru9I | TTAA | 4 cut(s) | 122, 1668, 2004, 2214 |
| TseFI | GTSAC | 5 cut(s) | 695, 909, 1085, 1579, 2042 |
| Tsp45I | GTSAC | 5 cut(s) | 695, 909, 1085, 1579, 2042 |
| TspDTI | ATGAA | 9 cut(s) | 4, 300, 684, 812, 957, 1377, 1521, 2049, 2274 |
| TspMI | CCCGGG | 1 cut(s) | 540 |
| VpaK11BI | GGWCC | 2 cut(s) | 1556, 2267 |
| XapI | RAATTY | 3 cut(s) | 1128, 1546, 2136 |
| XbaI | TCTAGA | 1 cut(s) | 1535 |
| XceI | RCATGY | 3 cut(s) | 515, 1639, 1883 |
| XmaI | CCCGGG | 1 cut(s) | 540 |
| XmaJI | CCTAGG | 1 cut(s) | 2198 |
| XmiI | GTMKAC | 3 cut(s) | 803, 900, 1497 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1288, 1374 |
| XspI | CTAG | 7 cut(s) | 1029, 1077, 1536, 1836, 1913, 2142, 2199 |
| ZrmI | AGTACT | 2 cut(s) | 1840, 2146 |