Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0019294

Physical Location & Seq

Genomic Coordinates Reverse (-)

27924656 .. 27925370

Gene Structure 715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCTACCACCAACAGCGCTACTGTGAGTTTGAAGCTCCTGATTGACACAAAAAAGCAACAAACAATCAAGGAAGTTGTGAATTTTCTCTTCACTCTTCTGTCCTTGCATGTTGCAACTGTGACTAGGCTCCTCCTCTCTAATGGTGGCATGGTTGGTTGCTTAGGCAAACTTTACAAGAGCCTTGAAAATCTCAGTGACACATACATGCAACCCAATCTTAACAAAGACTACCTGCTGAAACCCAAGACAACAATTTCTGGCGCTAACATCCTTCATTTGCCAGCCAACAATGACTCGAATGCGCCTAAACGGTTCTACCTCTGTGCAAATTGCAAGCGCCATATTTCTGATAGTCCTGTAACAACTTGTCCAACGTGCATTTCACTCAAAATATCCACCCAGGTGTTTTATGTTGCTCCTCCACCAGAACCTACTGGAGTGACGACTGGCAATATTAAGAGCAGATACGACATTATGTACATGATAATGGATGATTTGGAAGTGAAGCCTATGTCTACTGTATCAAGTATCACATTGCTTAAAACGTTGAACTTTAAGACGGTTGACGCTTTTGTAAAATTTGTTTTGTTTACAATAAATAGTTTGAAATTGGTGAAGGCATCATTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF674

Protein Analysis

212

Amino Acids

23.33

Weight (kDa)

9.33

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019294)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G228200_v2.0.a1 Prupe.2G228500_v2.0.a1 Prupe.2G279000_v2.0.a1 Prupe.2G279000_v2.0.a1 Prupe.2G279200_v2.0.a1 Prupe.2G279300_v2.0.a1 Prupe.6G261800_v2.0.a1 Prupe.6G291300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	518
AclI	AACGTT	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	82, 581
AfaI	GTAC	1 cut(s)	482
AfeI	AGCGCT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	34, 188, 553, 610
AjnI	CCWGG	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	3 cut(s)	367, 399, 611
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Aor51HI	AGCGCT	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	82, 581
AspLEI	GCGC	4 cut(s)	20, 266, 307, 342
AsuHPI	GGTGA	1 cut(s)	628
BciT130I	CCWGG	1 cut(s)	404
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	3 cut(s)	21, 267, 343
BfuAI	ACCTGC	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	632
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	402
Bse1I	ACTGG	2 cut(s)	442, 454
Bse3DI	GCAATG	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	2 cut(s)	270, 499
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	2 cut(s)	442, 454
BseRI	GAGGAG	3 cut(s)	122, 125, 411
BsmI	GAATGC	1 cut(s)	307
Bsp1407I	TGTACA	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	536
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	442, 454
BssECI	CCNNGG	1 cut(s)	402
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	5 cut(s)	25, 121, 315, 523, 565
Bst6I	CTCTTC	2 cut(s)	95, 102
BstAUI	TGTACA	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	285, 338
BstDEI	CTNAG	2 cut(s)	163, 194
BstF5I	GGATG	2 cut(s)	270, 499
BstH2I	RGCGCY	3 cut(s)	21, 267, 343
BstHHI	GCGC	4 cut(s)	20, 266, 307, 342
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	113, 211
BstSCI	CCNGG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	270, 499
BtsIMutI	CAGTG	1 cut(s)	202
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	285, 338
CfoI	GCGC	4 cut(s)	20, 266, 307, 342
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	481
CviAII	CATG	4 cut(s)	110, 151, 208, 484
CviJI	RGCY	6 cut(s)	5, 37, 130, 183, 287, 511
CviKI_1	RGCY	6 cut(s)	5, 37, 130, 183, 287, 511
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	2 cut(s)	163, 194
Eam1104I	CTCTTC	2 cut(s)	95, 102
EarI	CTCTTC	2 cut(s)	95, 102
Eco47III	AGCGCT	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	402
FaeI	CATG	4 cut(s)	113, 154, 211, 487
FaiI	YATR	9 cut(s)	111, 152, 205, 209, 345, 414, 479, 485, 515
FatI	CATG	4 cut(s)	109, 150, 207, 483
FblI	GTMKAC	1 cut(s)	518
FokI	GGATG	2 cut(s)	257, 506
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	4 cut(s)	19, 265, 306, 341
GsuI	CTGGAG	1 cut(s)	459
HaeII	RGCGCY	3 cut(s)	21, 267, 343
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	4 cut(s)	20, 266, 307, 342
Hin1II	CATG	4 cut(s)	113, 154, 211, 487
Hin6I	GCGC	4 cut(s)	18, 264, 305, 340
HinP1I	GCGC	4 cut(s)	18, 264, 305, 340
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HinfI	GANTC	1 cut(s)	296
HphI	GGTGA	1 cut(s)	628
Hpy166II	GTNNAC	3 cut(s)	519, 568, 594
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	3 cut(s)	519, 568, 594
HpyAV	CCTTC	2 cut(s)	284, 613
HpyCH4III	ACNGT	5 cut(s)	25, 121, 315, 523, 565
HpyCH4IV	ACGT	2 cut(s)	377, 548
HpyCH4V	TGCA	6 cut(s)	109, 116, 211, 329, 336, 381
HpyF3I	CTNAG	2 cut(s)	163, 194
HpySE526I	ACGT	2 cut(s)	377, 548
Hsp92II	CATG	4 cut(s)	113, 154, 211, 487
HspAI	GCGC	4 cut(s)	18, 264, 305, 340
LmnI	GCTCC	3 cut(s)	42, 135, 424
LweI	GCATC	1 cut(s)	632
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	2 cut(s)	377, 548
MaeIII	GTNAC	4 cut(s)	121, 197, 361, 442
MboII	GAAGA	2 cut(s)	82, 89
MluCI	AATT	5 cut(s)	82, 255, 331, 581, 611
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	398
MnlI	CCTC	4 cut(s)	143, 146, 332, 432
MseI	TTAA	4 cut(s)	222, 459, 543, 558
MslI	CAYNNNNRTG	4 cut(s)	206, 404, 488, 631
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	404
NlaIII	CATG	4 cut(s)	113, 154, 211, 487
NlaIV	GGNNCC	1 cut(s)	131
NmuCI	GTSAC	3 cut(s)	121, 197, 442
NspI	RCATGY	2 cut(s)	113, 211
OliI	CACNNNNGTG	1 cut(s)	404
PctI	GAATGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Psp1406I	AACGTT	1 cut(s)	548
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	1 cut(s)	131
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	4 cut(s)	206, 404, 488, 631
SaqAI	TTAA	4 cut(s)	222, 459, 543, 558
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	404
SetI	ASST	7 cut(s)	39, 237, 324, 380, 408, 436, 551
SfaNI	GCATC	1 cut(s)	632
SmiMI	CAYNNNNRTG	4 cut(s)	206, 404, 488, 631
Sse9I	AATT	5 cut(s)	82, 255, 331, 581, 611
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	402
TaaI	ACNGT	5 cut(s)	25, 121, 315, 523, 565
TaiI	ACGT	2 cut(s)	380, 551
TaqI	TCGA	1 cut(s)	299
TasI	AATT	5 cut(s)	82, 255, 331, 581, 611
TatI	WGTACW	1 cut(s)	480
Tru1I	TTAA	4 cut(s)	222, 459, 543, 558
Tru9I	TTAA	4 cut(s)	222, 459, 543, 558
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	3 cut(s)	121, 197, 442
Tsp45I	GTSAC	3 cut(s)	121, 197, 442
TspDTI	ATGAA	1 cut(s)	266
TspRI	CASTG	1 cut(s)	202
XapI	RAATTY	2 cut(s)	82, 581
XceI	RCATGY	2 cut(s)	113, 211
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.