Domain of unknown function (DUF3475)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51670 AT5G51670 |
| fragaria_vesca | FvH4_7g28220 |
| malus_domestica | MD01G1186200.v1.1 MD07G1258400.v1.1 |
| prunus_persica | Prupe.2G282900_v2.0.a1 |
| pyrus_communis | pycom01g19780 |
| rosa_chinensis | RchiOBHm_Chr1g0375201 |
| rosa_laevigata | RLG00000026680 |
| rosa_multiflora | Rmu_sc0000554.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00282950 |
| rosa_rugosa | Rorug01G0389000 |
| rosa_samantha | Rh1AG399700 Rh1BG364800 Rh1CG377700 Rh1DG395400 |
| rosa_wichuraiana | Rw1G035480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 485 |
| Acc16I | TGCGCA | 1 cut(s) | 101 |
| Acc36I | ACCTGC | 1 cut(s) | 1368 |
| AccB1I | GGYRCC | 1 cut(s) | 1273 |
| AccI | GTMKAC | 1 cut(s) | 816 |
| AccII | CGCG | 2 cut(s) | 402, 983 |
| AciI | CCGC | 8 cut(s) | 64, 315, 370, 528, 773, 807, 867, 983 |
| AclI | AACGTT | 1 cut(s) | 111 |
| AclWI | GGATC | 3 cut(s) | 187, 398, 1148 |
| AcoI | YGGCCR | 1 cut(s) | 1164 |
| AcuI | CTGAAG | 1 cut(s) | 1353 |
| AcyI | GRCGYC | 1 cut(s) | 482 |
| AfaI | GTAC | 4 cut(s) | 410, 470, 494, 973 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 169, 1173, 1434 |
| AflIII | ACRYGT | 1 cut(s) | 836 |
| AgsI | TTSAA | 4 cut(s) | 862, 1301, 1366, 1415 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 837 |
| AhlI | ACTAGT | 1 cut(s) | 1097 |
| AjiI | CACGTC | 1 cut(s) | 837 |
| AjnI | CCWGG | 1 cut(s) | 342 |
| Alw21I | GWGCWC | 2 cut(s) | 288, 522 |
| Alw26I | GTCTC | 4 cut(s) | 5, 203, 247, 1215 |
| AlwI | GGATC | 3 cut(s) | 187, 398, 1148 |
| Ama87I | CYCGRG | 2 cut(s) | 394, 461 |
| AoxI | GGCC | 6 cut(s) | 123, 139, 171, 854, 1164, 1404 |
| ApeKI | GCWGC | 4 cut(s) | 591, 986, 1337, 1351 |
| AseI | ATTAAT | 1 cut(s) | 1431 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 228 |
| AspLEI | GCGC | 4 cut(s) | 102, 281, 983, 997 |
| AspS9I | GGNCC | 6 cut(s) | 66, 172, 346, 717, 854, 1405 |
| AsuC2I | CCSGG | 1 cut(s) | 853 |
| AsuHPI | GGTGA | 1 cut(s) | 466 |
| AvaI | CYCGRG | 2 cut(s) | 394, 461 |
| AvaII | GGWCC | 3 cut(s) | 66, 346, 717 |
| BanI | GGYRCC | 1 cut(s) | 1273 |
| BanII | GRGCYC | 2 cut(s) | 288, 1123 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 676, 708 |
| BauI | CACGAG | 1 cut(s) | 1355 |
| BbsI | GAAGAC | 1 cut(s) | 573 |
| Bbv12I | GWGCWC | 2 cut(s) | 288, 522 |
| BbvI | GCAGC | 4 cut(s) | 603, 973, 1324, 1338 |
| BccI | CCATC | 5 cut(s) | 221, 326, 496, 829, 1018 |
| BciT130I | CCWGG | 1 cut(s) | 344 |
| BciVI | GTATCC | 2 cut(s) | 433, 1112 |
| BclI | TGATCA | 2 cut(s) | 1014, 1035 |
| BcnI | CCSGG | 1 cut(s) | 853 |
| BcoDI | GTCTC | 4 cut(s) | 5, 203, 247, 1215 |
| BcuI | ACTAGT | 1 cut(s) | 1097 |
| BfaI | CTAG | 3 cut(s) | 1098, 1458, 1462 |
| BfoI | RGCGCY | 1 cut(s) | 998 |
| BfuAI | ACCTGC | 1 cut(s) | 1368 |
| BfuI | GTATCC | 2 cut(s) | 433, 1112 |
| BglII | AGATCT | 1 cut(s) | 668 |
| BisI | GCNGC | 5 cut(s) | 592, 984, 987, 1338, 1352 |
| BlpI | GCTNAGC | 1 cut(s) | 533 |
| BlsI | GCNGC | 5 cut(s) | 593, 985, 988, 1339, 1353 |
| BmcAI | AGTACT | 1 cut(s) | 973 |
| Bme1390I | CCNGG | 2 cut(s) | 344, 853 |
| Bme18I | GGWCC | 3 cut(s) | 66, 346, 717 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 837 |
| BmeT110I | CYCGRG | 2 cut(s) | 394, 461 |
| BmgBI | CACGTC | 1 cut(s) | 837 |
| BmgT120I | GGNCC | 6 cut(s) | 66, 172, 346, 717, 854, 1405 |
| BmiI | GGNNCC | 3 cut(s) | 348, 680, 1275 |
| BmrFI | CCNGG | 2 cut(s) | 344, 853 |
| BmsI | GCATC | 3 cut(s) | 312, 1054, 1077 |
| BoxI | GACNNNNGTC | 1 cut(s) | 396 |
| BpiI | GAAGAC | 1 cut(s) | 573 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 929, 961, 1168, 1200 |
| BpmI | CTGGAG | 2 cut(s) | 307, 602 |
| Bpu10I | CCTNAGC | 2 cut(s) | 329, 1401 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 533 |
| BpuEI | CTTGAG | 2 cut(s) | 8, 29 |
| BpuMI | CCSGG | 1 cut(s) | 853 |
| BsaHI | GRCGYC | 1 cut(s) | 482 |
| BsaWI | WCCGGW | 1 cut(s) | 1156 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 194, 200, 224, 230 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 169, 1173, 1434 |
| Bse118I | RCCGGY | 1 cut(s) | 137 |
| BseBI | CCWGG | 1 cut(s) | 344 |
| BseGI | GGATG | 4 cut(s) | 156, 303, 821, 1069 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 169, 1173, 1434 |
| BseMII | CTCAG | 2 cut(s) | 524, 1338 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseXI | GCAGC | 4 cut(s) | 603, 973, 1324, 1338 |
| Bsh1236I | CGCG | 2 cut(s) | 402, 983 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1109 |
| BshFI | GGCC | 6 cut(s) | 125, 141, 173, 856, 1166, 1406 |
| BshNI | GGYRCC | 1 cut(s) | 1273 |
| BsiEI | CGRYCG | 1 cut(s) | 1109 |
| BsiHKAI | GWGCWC | 2 cut(s) | 288, 522 |
| BsiHKCI | CYCGRG | 2 cut(s) | 394, 461 |
| BsiSI | CCGG | 4 cut(s) | 138, 852, 1157, 1167 |
| BslFI | GGGAC | 1 cut(s) | 1085 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 169, 1173, 1434 |
| BsmAI | GTCTC | 4 cut(s) | 5, 203, 247, 1215 |
| BsmBI | CGTCTC | 1 cut(s) | 203 |
| BsmFI | GGGAC | 1 cut(s) | 1085 |
| BsmI | GAATGC | 2 cut(s) | 898, 1421 |
| BsnI | GGCC | 6 cut(s) | 125, 141, 173, 856, 1166, 1406 |
| BsoBI | CYCGRG | 2 cut(s) | 394, 461 |
| Bsp1286I | GDGCHC | 3 cut(s) | 288, 522, 1123 |
| Bsp1407I | TGTACA | 1 cut(s) | 492 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 533 |
| Bsp68I | TCGCGA | 1 cut(s) | 402 |
| BspACI | CCGC | 8 cut(s) | 64, 315, 370, 528, 773, 807, 867, 983 |
| BspANI | GGCC | 6 cut(s) | 125, 141, 173, 856, 1166, 1406 |
| BspCNI | CTCAG | 2 cut(s) | 525, 1339 |
| BspFNI | CGCG | 2 cut(s) | 402, 983 |
| BspLI | GGNNCC | 3 cut(s) | 348, 680, 1275 |
| BspMI | ACCTGC | 1 cut(s) | 1368 |
| BspPI | GGATC | 3 cut(s) | 187, 398, 1148 |
| BspT107I | GGYRCC | 1 cut(s) | 1273 |
| BsrFI | RCCGGY | 1 cut(s) | 137 |
| BsrGI | TGTACA | 1 cut(s) | 492 |
| BssAI | RCCGGY | 1 cut(s) | 137 |
| BssNI | GRCGYC | 1 cut(s) | 482 |
| BssSI | CACGAG | 1 cut(s) | 1355 |
| Bst2BI | CACGAG | 1 cut(s) | 1355 |
| Bst2UI | CCWGG | 1 cut(s) | 344 |
| Bst4CI | ACNGT | 4 cut(s) | 478, 697, 730, 814 |
| Bst6I | CTCTTC | 1 cut(s) | 380 |
| BstACI | GRCGYC | 1 cut(s) | 482 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 339 |
| BstAUI | TGTACA | 1 cut(s) | 492 |
| BstC8I | GCNNGC | 7 cut(s) | 139, 171, 277, 530, 773, 867, 1164 |
| BstDEI | CTNAG | 4 cut(s) | 329, 533, 1347, 1401 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 167 |
| BstF5I | GGATG | 4 cut(s) | 156, 303, 821, 1069 |
| BstFNI | CGCG | 2 cut(s) | 402, 983 |
| BstH2I | RGCGCY | 1 cut(s) | 998 |
| BstHHI | GCGC | 4 cut(s) | 102, 281, 983, 997 |
| BstMAI | GTCTC | 4 cut(s) | 5, 203, 247, 1215 |
| BstMCI | CGRYCG | 1 cut(s) | 1109 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 339, 517, 534, 862, 958, 992, 1447 |
| BstNI | CCWGG | 1 cut(s) | 344 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 396 |
| BstSCI | CCNGG | 2 cut(s) | 342, 851 |
| BstUI | CGCG | 2 cut(s) | 402, 983 |
| BstV1I | GCAGC | 4 cut(s) | 603, 973, 1324, 1338 |
| BstV2I | GAAGAC | 1 cut(s) | 573 |
| BstX2I | RGATCY | 1 cut(s) | 668 |
| BstYI | RGATCY | 1 cut(s) | 668 |
| BsuI | GTATCC | 2 cut(s) | 433, 1112 |
| BsuRI | GGCC | 6 cut(s) | 125, 141, 173, 856, 1166, 1406 |
| BtrI | CACGTC | 1 cut(s) | 837 |
| BtsCI | GGATG | 4 cut(s) | 156, 303, 821, 1069 |
| BtsIMutI | CAGTG | 1 cut(s) | 726 |
| BtuMI | TCGCGA | 1 cut(s) | 402 |
| BveI | ACCTGC | 1 cut(s) | 1368 |
| Cac8I | GCNNGC | 7 cut(s) | 139, 171, 277, 530, 773, 867, 1164 |
| CfoI | GCGC | 4 cut(s) | 102, 281, 983, 997 |
| Cfr10I | RCCGGY | 1 cut(s) | 137 |
| Cfr13I | GGNCC | 6 cut(s) | 66, 172, 346, 717, 854, 1405 |
| CseI | GACGC | 2 cut(s) | 65, 263 |
| Csp6I | GTAC | 4 cut(s) | 409, 469, 493, 972 |
| CviAII | CATG | 4 cut(s) | 97, 145, 190, 1291 |
| CviQI | GTAC | 4 cut(s) | 409, 469, 493, 972 |
| DdeI | CTNAG | 4 cut(s) | 329, 533, 1347, 1401 |
| DraI | TTTAAA | 1 cut(s) | 660 |
| DriI | GACNNNNNGTC | 1 cut(s) | 837 |
| EaeI | YGGCCR | 1 cut(s) | 1164 |
| Eam1104I | CTCTTC | 1 cut(s) | 380 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 837 |
| EarI | CTCTTC | 1 cut(s) | 380 |
| Ecl136II | GAGCTC | 1 cut(s) | 286 |
| Eco24I | GRGCYC | 2 cut(s) | 288, 1123 |
| Eco47I | GGWCC | 3 cut(s) | 66, 346, 717 |
| Eco53kI | GAGCTC | 1 cut(s) | 286 |
| Eco57I | CTGAAG | 1 cut(s) | 1353 |
| Eco88I | CYCGRG | 2 cut(s) | 394, 461 |
| EcoICRI | GAGCTC | 1 cut(s) | 286 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 167 |
| EcoO109I | RGGNCCY | 3 cut(s) | 172, 346, 1405 |
| EcoRII | CCWGG | 1 cut(s) | 342 |
| EcoT38I | GRGCYC | 2 cut(s) | 288, 1123 |
| Esp3I | CGTCTC | 1 cut(s) | 203 |
| FaeI | CATG | 4 cut(s) | 100, 148, 193, 1294 |
| FaqI | GGGAC | 1 cut(s) | 1085 |
| FatI | CATG | 4 cut(s) | 96, 144, 189, 1290 |
| FauI | CCCGC | 3 cut(s) | 521, 780, 874 |
| FbaI | TGATCA | 2 cut(s) | 1014, 1035 |
| FblI | GTMKAC | 1 cut(s) | 816 |
| Fnu4HI | GCNGC | 5 cut(s) | 592, 984, 987, 1338, 1352 |
| FokI | GGATG | 4 cut(s) | 143, 290, 808, 1076 |
| FriOI | GRGCYC | 2 cut(s) | 288, 1123 |
| Fsp4HI | GCNGC | 5 cut(s) | 592, 984, 987, 1338, 1352 |
| FspBI | CTAG | 3 cut(s) | 1098, 1458, 1462 |
| FspI | TGCGCA | 1 cut(s) | 101 |
| GlaI | GCGC | 4 cut(s) | 101, 280, 982, 996 |
| GluI | GCNGC | 5 cut(s) | 592, 984, 987, 1338, 1352 |
| GsuI | CTGGAG | 2 cut(s) | 307, 602 |
| HaeII | RGCGCY | 1 cut(s) | 998 |
| HaeIII | GGCC | 6 cut(s) | 125, 141, 173, 856, 1166, 1406 |
| HapII | CCGG | 4 cut(s) | 138, 852, 1157, 1167 |
| HgaI | GACGC | 2 cut(s) | 65, 263 |
| HhaI | GCGC | 4 cut(s) | 102, 281, 983, 997 |
| Hin1I | GRCGYC | 1 cut(s) | 482 |
| Hin1II | CATG | 4 cut(s) | 100, 148, 193, 1294 |
| Hin6I | GCGC | 4 cut(s) | 100, 279, 981, 995 |
| HinP1I | GCGC | 4 cut(s) | 100, 279, 981, 995 |
| HindIII | AAGCTT | 3 cut(s) | 540, 685, 746 |
| HinfI | GANTC | 5 cut(s) | 209, 295, 392, 938, 1194 |
| HpaII | CCGG | 4 cut(s) | 138, 852, 1157, 1167 |
| HphI | GGTGA | 1 cut(s) | 466 |
| Hpy166II | GTNNAC | 2 cut(s) | 486, 817 |
| Hpy188I | TCNGA | 5 cut(s) | 181, 359, 826, 831, 1106 |
| Hpy188III | TCNNGA | 6 cut(s) | 130, 292, 401, 454, 463, 887 |
| Hpy8I | GTNNAC | 2 cut(s) | 486, 817 |
| Hpy99I | CGWCG | 8 cut(s) | 59, 254, 257, 293, 580, 614, 838, 1114 |
| HpyAV | CCTTC | 4 cut(s) | 136, 218, 373, 786 |
| HpyCH4III | ACNGT | 4 cut(s) | 478, 697, 730, 814 |
| HpyCH4IV | ACGT | 6 cut(s) | 111, 450, 471, 482, 836, 1287 |
| HpyCH4V | TGCA | 3 cut(s) | 1316, 1377, 1419 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 339, 517, 534, 862, 958, 992, 1447 |
| HpyF3I | CTNAG | 4 cut(s) | 329, 533, 1347, 1401 |
| HpySE526I | ACGT | 6 cut(s) | 111, 450, 471, 482, 836, 1287 |
| Hsp92I | GRCGYC | 1 cut(s) | 482 |
| Hsp92II | CATG | 4 cut(s) | 100, 148, 193, 1294 |
| HspAI | GCGC | 4 cut(s) | 100, 279, 981, 995 |
| KroI | GCCGGC | 1 cut(s) | 137 |
| KroNI | GCCGGC | 1 cut(s) | 139 |
| Ksp22I | TGATCA | 2 cut(s) | 1014, 1035 |
| LmnI | GCTCC | 3 cut(s) | 678, 957, 1251 |
| Lsp1109I | GCAGC | 4 cut(s) | 603, 973, 1324, 1338 |
| LweI | GCATC | 3 cut(s) | 312, 1054, 1077 |
| MaeI | CTAG | 3 cut(s) | 1098, 1458, 1462 |
| MaeII | ACGT | 6 cut(s) | 111, 450, 471, 482, 836, 1287 |
| MaeIII | GTNAC | 3 cut(s) | 472, 478, 697 |
| MboII | GAAGA | 7 cut(s) | 290, 367, 573, 616, 637, 1042, 1289 |
| MfeI | CAATTG | 1 cut(s) | 412 |
| MflI | RGATCY | 1 cut(s) | 668 |
| MhlI | GDGCHC | 3 cut(s) | 288, 522, 1123 |
| MluCI | AATT | 5 cut(s) | 237, 412, 1366, 1423, 1444 |
| MlyI | GAGTC | 3 cut(s) | 203, 386, 947 |
| MmeI | TCCRAC | 1 cut(s) | 966 |
| MroNI | GCCGGC | 1 cut(s) | 137 |
| MroXI | GAANNNNTTC | 1 cut(s) | 228 |
| MseI | TTAA | 4 cut(s) | 429, 651, 659, 1431 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1022 |
| MspI | CCGG | 4 cut(s) | 138, 852, 1157, 1167 |
| MspR9I | CCNGG | 2 cut(s) | 344, 853 |
| MunI | CAATTG | 1 cut(s) | 412 |
| Mva1269I | GAATGC | 2 cut(s) | 898, 1421 |
| MvaI | CCWGG | 1 cut(s) | 344 |
| MvnI | CGCG | 2 cut(s) | 402, 983 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 339, 517, 534, 862, 958, 992, 1447 |
| NaeI | GCCGGC | 1 cut(s) | 139 |
| NciI | CCSGG | 1 cut(s) | 853 |
| NgoMIV | GCCGGC | 1 cut(s) | 137 |
| NlaIII | CATG | 4 cut(s) | 100, 148, 193, 1294 |
| NlaIV | GGNNCC | 3 cut(s) | 348, 680, 1275 |
| NmeAIII | GCCGAG | 1 cut(s) | 307 |
| NmuCI | GTSAC | 3 cut(s) | 472, 478, 697 |
| NruI | TCGCGA | 1 cut(s) | 402 |
| NsbI | TGCGCA | 1 cut(s) | 101 |
| PaeR7I | CTCGAG | 1 cut(s) | 461 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 279, 387, 468, 581, 1091 |
| PctI | GAATGC | 2 cut(s) | 898, 1421 |
| PdiI | GCCGGC | 1 cut(s) | 139 |
| PdmI | GAANNNNTTC | 1 cut(s) | 228 |
| PfeI | GAWTC | 2 cut(s) | 295, 1194 |
| PkrI | GCNGC | 5 cut(s) | 593, 985, 988, 1339, 1353 |
| Ple19I | CGATCG | 1 cut(s) | 1109 |
| PleI | GAGTC | 3 cut(s) | 203, 386, 946 |
| PpsI | GAGTC | 3 cut(s) | 203, 386, 946 |
| PpuMI | RGGWCCY | 1 cut(s) | 346 |
| PshAI | GACNNNNGTC | 1 cut(s) | 396 |
| PshBI | ATTAAT | 1 cut(s) | 1431 |
| Psp124BI | GAGCTC | 1 cut(s) | 288 |
| Psp1406I | AACGTT | 1 cut(s) | 111 |
| Psp5II | RGGWCCY | 1 cut(s) | 346 |
| Psp6I | CCWGG | 1 cut(s) | 342 |
| PspGI | CCWGG | 1 cut(s) | 342 |
| PspN4I | GGNNCC | 3 cut(s) | 348, 680, 1275 |
| PspPI | GGNCC | 6 cut(s) | 66, 172, 346, 717, 854, 1405 |
| PspPPI | RGGWCCY | 1 cut(s) | 346 |
| PsuI | RGATCY | 1 cut(s) | 668 |
| PvuI | CGATCG | 1 cut(s) | 1109 |
| RruI | TCGCGA | 1 cut(s) | 402 |
| RsaI | GTAC | 4 cut(s) | 410, 470, 494, 973 |
| RsaNI | GTAC | 4 cut(s) | 409, 469, 493, 972 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SacI | GAGCTC | 1 cut(s) | 288 |
| SaqAI | TTAA | 4 cut(s) | 429, 651, 659, 1431 |
| SatI | GCNGC | 5 cut(s) | 592, 984, 987, 1338, 1352 |
| Sau96I | GGNCC | 6 cut(s) | 66, 172, 346, 717, 854, 1405 |
| ScaI | AGTACT | 1 cut(s) | 973 |
| SchI | GAGTC | 3 cut(s) | 203, 386, 947 |
| ScrFI | CCNGG | 2 cut(s) | 344, 853 |
| SduI | GDGCHC | 3 cut(s) | 288, 522, 1123 |
| SfaNI | GCATC | 3 cut(s) | 312, 1054, 1077 |
| Sfr274I | CTCGAG | 1 cut(s) | 461 |
| SinI | GGWCC | 3 cut(s) | 66, 346, 717 |
| SlaI | CTCGAG | 1 cut(s) | 461 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1022 |
| SmlI | CTYRAG | 3 cut(s) | 8, 23, 461 |
| SmoI | CTYRAG | 3 cut(s) | 8, 23, 461 |
| SpeI | ACTAGT | 1 cut(s) | 1097 |
| Sse9I | AATT | 5 cut(s) | 237, 412, 1366, 1423, 1444 |
| SsiI | CCGC | 8 cut(s) | 64, 315, 370, 528, 773, 807, 867, 983 |
| SspI | AATATT | 1 cut(s) | 925 |
| SspMI | CTAG | 3 cut(s) | 1098, 1458, 1462 |
| SstI | GAGCTC | 1 cut(s) | 288 |
| StyD4I | CCNGG | 2 cut(s) | 342, 851 |
| TaaI | ACNGT | 4 cut(s) | 478, 697, 730, 814 |
| TaiI | ACGT | 6 cut(s) | 114, 453, 474, 485, 839, 1290 |
| TasI | AATT | 5 cut(s) | 237, 412, 1366, 1423, 1444 |
| TatI | WGTACW | 2 cut(s) | 492, 971 |
| TauI | GCSGC | 1 cut(s) | 986 |
| TfiI | GAWTC | 2 cut(s) | 295, 1194 |
| Tru1I | TTAA | 4 cut(s) | 429, 651, 659, 1431 |
| Tru9I | TTAA | 4 cut(s) | 429, 651, 659, 1431 |
| TscAI | CASTG | 1 cut(s) | 733 |
| TseFI | GTSAC | 3 cut(s) | 472, 478, 697 |
| TseI | GCWGC | 4 cut(s) | 591, 986, 1337, 1351 |
| Tsp45I | GTSAC | 3 cut(s) | 472, 478, 697 |
| TspDTI | ATGAA | 1 cut(s) | 768 |
| TspGWI | ACGGA | 2 cut(s) | 185, 396 |
| TspRI | CASTG | 1 cut(s) | 733 |
| VpaK11BI | GGWCC | 3 cut(s) | 66, 346, 717 |
| VspI | ATTAAT | 1 cut(s) | 1431 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 167 |
| XhoI | CTCGAG | 1 cut(s) | 461 |
| XmiI | GTMKAC | 1 cut(s) | 816 |
| XmnI | GAANNNNTTC | 1 cut(s) | 228 |
| XspI | CTAG | 3 cut(s) | 1098, 1458, 1462 |
| ZraI | GACGTC | 1 cut(s) | 483 |
| ZrmI | AGTACT | 1 cut(s) | 973 |