Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011019

Physical Location & Seq

Genomic Coordinates Forward (+)

50024010 .. 50027731

Gene Structure 3722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0389000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTCCAAGAAGAGGTCGAGGTGGACCACCCAAGACTTCTCGTATGGCTGCCGCCGTTGAGGCCATGGCGGACATGGGTTTCGAGCCCAAACTGGTCCGTCAGAAGGTGAACCGGTTACTAAAAAAAGACCTTTATGGAGAAGAGGGCTGGCGTTTTATTGAAGAAGGTTCTTACAGTGTACTACTTGAAGCCCTTCTGGAGGAGCAAACAGATGGTGATGAAAATGGGAATGCTTCTCTGGAAAAATCAAAAGGTGGAAAAGATGCTGAAACTGCAGGAGCTGGACCCTCCTCGAGCAAGAATGCTTCTCCGAAAAAATCAACCTGTGGAAATGACGCTGAAACTTCAGAAGCTGGACTATTAAGCAAGGATGTATCTTTACAAACTGATGCAAGAGGTGTAAATGATACTGAAACTTCAGGAGCTGGACTATCCATAATCAAGGATGTGTCTCCACAAACTGATGCAAGAGGTGTAAATGATGCTGAATCATCAGGAGCTGGACCTTCCTCAAGCAAGGTTGCTTCTGTAGAAAATGATCCAAGTGGTGGAAGTGAGGTTGAAACATCAGGACCTGTACCCTCCTCCTTAACCAAGGTTTTTCTTCCATGCTCAAACCTTGAGACTGTGAGCAGAACATTAGAGAGCAAGGATGATCTGGATTCCTCATCACATAACGAACCTTTGACCACTGCATCGCCCACTCAATTGCCTGATGCTGATAACTTTCTCCTACCTACTGAAGGAGAAATACAAGGCCAGCAAGGTACTCCTGTTACCCACTCTGTACAAGAAGTTGATACTCTTCCAGCCAGGAGGCGTAGACCATACCATGGTTGGGTTGGTTGTGATGATGATGATTTTGTGGAACAAACAGAGGCTCCATTGCCAGAAGTGTTGCGGAAAATGTTTATTCTGACTGTTGATTCTGGTAAGAGAAAGCGCAAGAGAAGGTGGGATGTGAAGCCTGAGAATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

327

Amino Acids

34.99

Weight (kDa)

4.87

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIYLD	PF10440	13 - 70	7.9e-17	Ubiquitin-binding WIYLD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51660 AT5G51660 AT5G51660 AT5G51660
fragaria_vesca	FvH4_7g28210 FvH4_7g28210 FvH4_7g28210 FvH4_7g28210
malus_domestica	MD01G1186100.v1.1
prunus_persica	Prupe.2G282700_v2.0.a1
pyrus_communis	pycom01g19770
rosa_chinensis	RchiOBHm_Chr1g0375181
rosa_laevigata	RLG00000026681
rosa_multiflora	Rmu_sc0000554.1_g000025
rosa_roxburghii	Rroxscaffold_4G00282960
rosa_rugosa	Rorug01G0389000 Rorug01G0389000
rosa_samantha	Rh1AG399600 Rh1CG377800
rosa_wichuraiana	Rw1G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	551, 836
AccI	GTMKAC	1 cut(s)	826
AciI	CCGC	3 cut(s)	54, 71, 904
AclWI	GGATC	1 cut(s)	536
AcuI	CTGAAG	3 cut(s)	333, 405, 765
AfaI	GTAC	4 cut(s)	183, 582, 772, 792
AfiI	CCNNNNNNNGG	7 cut(s)	14, 106, 202, 551, 746, 836, 841
AgeI	ACCGGT	1 cut(s)	114
AgsI	TTSAA	3 cut(s)	164, 191, 566
AjnI	CCWGG	1 cut(s)	815
AluBI	AGCT	4 cut(s)	284, 356, 428, 503
AluI	AGCT	4 cut(s)	284, 356, 428, 503
Alw26I	GTCTC	2 cut(s)	459, 620
AlwI	GGATC	1 cut(s)	536
AlwNI	CAGNNNCTG	5 cut(s)	284, 356, 428, 503, 578
Ama87I	CYCGRG	1 cut(s)	295
AoxI	GGCC	2 cut(s)	63, 760
ApeKI	GCWGC	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	65, 97
AsiGI	ACCGGT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	948
AspS9I	GGNCC	5 cut(s)	26, 97, 287, 506, 575
AsuHPI	GGTGA	2 cut(s)	121, 230
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	5 cut(s)	26, 97, 287, 506, 575
BaeI	ACNNNNGTAYC	2 cut(s)	762, 795
BanII	GRGCYC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	817
BcoDI	GTCTC	2 cut(s)	459, 620
BfmI	CTRYAG	2 cut(s)	276, 531
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	51, 54
BlsI	GCNGC	2 cut(s)	52, 55
Bme1390I	CCNGG	1 cut(s)	817
Bme18I	GGWCC	5 cut(s)	26, 97, 287, 506, 575
BmeT110I	CYCGRG	1 cut(s)	295
BmgT120I	GGNCC	5 cut(s)	26, 97, 287, 506, 575
BmiI	GGNNCC	3 cut(s)	6, 289, 885
BmrFI	CCNGG	1 cut(s)	817
BmsI	GCATC	6 cut(s)	256, 382, 457, 475, 707, 709
BpmI	CTGGAG	1 cut(s)	221
BpuEI	CTTGAG	2 cut(s)	499, 644
BsaJI	CCNNGG	3 cut(s)	66, 597, 835
BsaWI	WCCGGW	1 cut(s)	114
BsaXI	ACNNNNNCTCC	2 cut(s)	868, 898
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 106, 202, 551, 746, 836, 841
Bse118I	RCCGGY	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	1 cut(s)	887
BseBI	CCWGG	1 cut(s)	817
BseDI	CCNNGG	3 cut(s)	66, 597, 835
BseGI	GGATG	4 cut(s)	379, 454, 661, 967
BseLI	CCNNNNNNNGG	7 cut(s)	14, 106, 202, 551, 746, 836, 841
BseMI	GCAATG	1 cut(s)	887
BseMII	CTCAG	1 cut(s)	963
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	3 cut(s)	218, 283, 577
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	2 cut(s)	65, 762
BshTI	ACCGGT	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	115
BslI	CCNNNNNNNGG	7 cut(s)	14, 106, 202, 551, 746, 836, 841
BsmAI	GTCTC	2 cut(s)	459, 620
BsmI	GAATGC	2 cut(s)	238, 310
BsnI	GGCC	2 cut(s)	65, 762
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	2 cut(s)	541, 658
Bsp19I	CCATGG	2 cut(s)	66, 835
BspACI	CCGC	3 cut(s)	54, 71, 904
BspANI	GGCC	2 cut(s)	65, 762
BspCNI	CTCAG	1 cut(s)	964
BspLI	GGNNCC	3 cut(s)	6, 289, 885
BspMAI	CTGCAG	1 cut(s)	280
BspPI	GGATC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	887
BsrFI	RCCGGY	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	1 cut(s)	99
BssAI	RCCGGY	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	66, 597, 835
BssMI	GATC	2 cut(s)	541, 658
BssT1I	CCWWGG	3 cut(s)	66, 597, 835
Bst2UI	CCWGG	1 cut(s)	817
Bst4CI	ACNGT	3 cut(s)	179, 631, 925
Bst6I	CTCTTC	3 cut(s)	7, 138, 813
BstAUI	TGTACA	1 cut(s)	790
BstC8I	GCNNGC	2 cut(s)	152, 764
BstDEI	CTNAG	1 cut(s)	972
BstDSI	CCRYGG	2 cut(s)	66, 835
BstENI	CCTNNNNNAGG	2 cut(s)	200, 744
BstF5I	GGATG	4 cut(s)	379, 454, 661, 967
BstHHI	GCGC	1 cut(s)	948
BstKTI	GATC	2 cut(s)	544, 661
BstMAI	GTCTC	2 cut(s)	459, 620
BstMBI	GATC	2 cut(s)	541, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 275
BstNI	CCWGG	1 cut(s)	817
BstSCI	CCNGG	1 cut(s)	815
BstSFI	CTRYAG	2 cut(s)	276, 531
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	2 cut(s)	65, 762
BtgI	CCRYGG	2 cut(s)	66, 835
BtgZI	GCGATG	1 cut(s)	684
BtsCI	GGATG	4 cut(s)	379, 454, 661, 967
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	2 cut(s)	184, 693
Cac8I	GCNNGC	2 cut(s)	152, 764
CaiI	CAGNNNCTG	5 cut(s)	284, 356, 428, 503, 578
CfoI	GCGC	1 cut(s)	948
Cfr10I	RCCGGY	1 cut(s)	114
Cfr13I	GGNCC	5 cut(s)	26, 97, 287, 506, 575
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	4 cut(s)	182, 581, 771, 791
CspAI	ACCGGT	1 cut(s)	114
CviAII	CATG	4 cut(s)	67, 76, 612, 836
CviQI	GTAC	4 cut(s)	182, 581, 771, 791
DdeI	CTNAG	1 cut(s)	972
DpnI	GATC	2 cut(s)	543, 660
DpnII	GATC	2 cut(s)	541, 658
Eam1104I	CTCTTC	3 cut(s)	7, 138, 813
EarI	CTCTTC	3 cut(s)	7, 138, 813
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	3 cut(s)	66, 597, 835
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	5 cut(s)	26, 97, 287, 506, 575
Eco57I	CTGAAG	3 cut(s)	333, 405, 765
Eco88I	CYCGRG	1 cut(s)	295
EcoNI	CCTNNNNNAGG	2 cut(s)	200, 744
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	815
EcoT14I	CCWWGG	3 cut(s)	66, 597, 835
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	3 cut(s)	66, 597, 835
FaeI	CATG	4 cut(s)	70, 79, 615, 839
FatI	CATG	4 cut(s)	66, 75, 611, 835
FblI	GTMKAC	1 cut(s)	826
Fnu4HI	GCNGC	2 cut(s)	51, 54
FokI	GGATG	4 cut(s)	386, 461, 668, 974
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	51, 54
GlaI	GCGC	1 cut(s)	947
GluI	GCNGC	2 cut(s)	51, 54
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	65, 762
HapII	CCGG	1 cut(s)	115
HgaI	GACGC	1 cut(s)	347
HhaI	GCGC	1 cut(s)	948
Hin1II	CATG	4 cut(s)	70, 79, 615, 839
Hin6I	GCGC	1 cut(s)	946
HinP1I	GCGC	1 cut(s)	946
HinfI	GANTC	3 cut(s)	491, 665, 929
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	2 cut(s)	121, 230
Hpy166II	GTNNAC	4 cut(s)	26, 112, 182, 827
Hpy188I	TCNGA	4 cut(s)	105, 315, 352, 921
Hpy188III	TCNNGA	6 cut(s)	200, 242, 423, 498, 573, 662
Hpy8I	GTNNAC	4 cut(s)	26, 112, 182, 827
HpyAV	CCTTC	6 cut(s)	100, 161, 206, 519, 740, 948
HpyCH4III	ACNGT	3 cut(s)	179, 631, 925
HpyCH4V	TGCA	4 cut(s)	278, 395, 470, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 275
HpyF3I	CTNAG	1 cut(s)	972
Hsp92II	CATG	4 cut(s)	70, 79, 615, 839
HspAI	GCGC	1 cut(s)	946
Kzo9I	GATC	2 cut(s)	541, 658
LmnI	GCTCC	6 cut(s)	10, 205, 281, 425, 500, 889
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	6 cut(s)	256, 382, 457, 475, 707, 709
MaeIII	GTNAC	2 cut(s)	117, 778
MalI	GATC	2 cut(s)	543, 660
MboI	GATC	2 cut(s)	541, 658
MboII	GAAGA	5 cut(s)	24, 155, 176, 599, 800
MfeI	CAATTG	1 cut(s)	710
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	1 cut(s)	710
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	2 cut(s)	365, 593
MspI	CCGG	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	817
MunI	CAATTG	1 cut(s)	710
Mva1269I	GAATGC	2 cut(s)	238, 310
MvaI	CCWGG	1 cut(s)	817
MwoI	GCNNNNNNNGC	2 cut(s)	62, 275
NcoI	CCATGG	2 cut(s)	66, 835
NdeII	GATC	2 cut(s)	541, 658
NlaIII	CATG	4 cut(s)	70, 79, 615, 839
NlaIV	GGNNCC	3 cut(s)	6, 289, 885
PaeR7I	CTCGAG	1 cut(s)	295
PctI	GAATGC	2 cut(s)	238, 310
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	491, 665, 929
PflMI	CCANNNNNTGG	2 cut(s)	551, 836
PinAI	ACCGGT	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	52, 55
PpuMI	RGGWCCY	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	1 cut(s)	815
PspGI	CCWGG	1 cut(s)	815
PspN4I	GGNNCC	3 cut(s)	6, 289, 885
PspPI	GGNCC	5 cut(s)	26, 97, 287, 506, 575
PspPPI	RGGWCCY	1 cut(s)	575
PspXI	VCTCGAGB	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	280
PstNI	CAGNNNCTG	5 cut(s)	284, 356, 428, 503, 578
RsaI	GTAC	4 cut(s)	183, 582, 772, 792
RsaNI	GTAC	4 cut(s)	182, 581, 771, 791
SaqAI	TTAA	2 cut(s)	365, 593
SatI	GCNGC	2 cut(s)	51, 54
Sau3AI	GATC	2 cut(s)	541, 658
Sau96I	GGNCC	5 cut(s)	26, 97, 287, 506, 575
ScrFI	CCNGG	1 cut(s)	817
SduI	GDGCHC	1 cut(s)	90
SfaNI	GCATC	6 cut(s)	256, 382, 457, 475, 707, 709
SfcI	CTRYAG	2 cut(s)	276, 531
Sfr274I	CTCGAG	1 cut(s)	295
SinI	GGWCC	5 cut(s)	26, 97, 287, 506, 575
SlaI	CTCGAG	1 cut(s)	295
SmlI	CTYRAG	3 cut(s)	295, 514, 623
SmoI	CTYRAG	3 cut(s)	295, 514, 623
Sse9I	AATT	1 cut(s)	710
SsiI	CCGC	3 cut(s)	54, 71, 904
StyD4I	CCNGG	1 cut(s)	815
StyI	CCWWGG	3 cut(s)	66, 597, 835
TaaI	ACNGT	3 cut(s)	179, 631, 925
TaqI	TCGA	3 cut(s)	19, 84, 296
TasI	AATT	1 cut(s)	710
TatI	WGTACW	2 cut(s)	181, 790
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	491, 665, 929
Tru1I	TTAA	2 cut(s)	365, 593
Tru9I	TTAA	2 cut(s)	365, 593
TscAI	CASTG	2 cut(s)	184, 700
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	2 cut(s)	184, 700
Van91I	CCANNNNNTGG	2 cut(s)	551, 836
VpaK11BI	GGWCC	5 cut(s)	26, 97, 287, 506, 575
XagI	CCTNNNNNAGG	2 cut(s)	200, 744
XcmI	CCANNNNNNNNNTGG	3 cut(s)	73, 837, 842
XhoI	CTCGAG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	826
XmnI	GAANNNNTTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.