Cleavage and polyadenylation specificity factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51660 AT5G51660 AT5G51660 AT5G51660 |
| fragaria_vesca | FvH4_7g28210 FvH4_7g28210 FvH4_7g28210 FvH4_7g28210 |
| malus_domestica | MD01G1186100.v1.1 |
| prunus_persica | Prupe.2G282700_v2.0.a1 |
| pyrus_communis | pycom01g19770 |
| rosa_chinensis | RchiOBHm_Chr1g0375181 |
| rosa_laevigata | RLG00000026681 |
| rosa_multiflora | Rmu_sc0000554.1_g000025 |
| rosa_roxburghii | Rroxscaffold_4G00282960 |
| rosa_rugosa | Rorug01G0389000 Rorug01G0389000 |
| rosa_samantha | Rh1AG399600 Rh1CG377800 |
| rosa_wichuraiana | Rw1G035470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 933 |
| Acc65I | GGTACC | 1 cut(s) | 4004 |
| AccB1I | GGYRCC | 3 cut(s) | 3488, 3896, 4004 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 962 |
| AccBSI | CCGCTC | 3 cut(s) | 802, 2416, 2475 |
| AccI | GTMKAC | 3 cut(s) | 207, 718, 1145 |
| AccII | CGCG | 7 cut(s) | 14, 148, 153, 191, 273, 860, 3309 |
| AccIII | TCCGGA | 1 cut(s) | 2235 |
| AclWI | GGATC | 3 cut(s) | 557, 2066, 2120 |
| AcoI | YGGCCR | 4 cut(s) | 32, 1908, 3720, 4163 |
| AcuI | CTGAAG | 4 cut(s) | 1215, 2484, 2664, 3198 |
| AcvI | CACGTG | 1 cut(s) | 1760 |
| AcyI | GRCGYC | 2 cut(s) | 291, 1930 |
| AdeI | CACNNNGTG | 1 cut(s) | 1667 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 243, 962, 2235, 3026, 4042, 4300 |
| AflII | CTTAAG | 1 cut(s) | 1996 |
| AflIII | ACRYGT | 1 cut(s) | 845 |
| AhlI | ACTAGT | 1 cut(s) | 1319 |
| AjnI | CCWGG | 9 cut(s) | 239, 1717, 2228, 2304, 2678, 3039, 3964, 4008, 4165 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3268, 3300 |
| Alw21I | GWGCWC | 9 cut(s) | 1098, 1164, 1203, 1458, 1663, 1963, 2141, 2177, 3706 |
| Alw26I | GTCTC | 5 cut(s) | 284, 717, 832, 1290, 2433 |
| Alw44I | GTGCAC | 3 cut(s) | 1199, 1659, 2137 |
| AlwI | GGATC | 3 cut(s) | 557, 2066, 2120 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3931, 4172 |
| Ama87I | CYCGRG | 2 cut(s) | 78, 4235 |
| Aor13HI | TCCGGA | 1 cut(s) | 2235 |
| ApaI | GGGCCC | 1 cut(s) | 500 |
| ApaLI | GTGCAC | 3 cut(s) | 1199, 1659, 2137 |
| ApeKI | GCWGC | 6 cut(s) | 623, 677, 886, 1103, 2028, 2545 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 195, 227, 1985, 2017 |
| AseI | ATTAAT | 2 cut(s) | 912, 3527 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1556 |
| Asp718I | GGTACC | 1 cut(s) | 4004 |
| AspLEI | GCGC | 4 cut(s) | 16, 56, 150, 862 |
| AsuC2I | CCSGG | 1 cut(s) | 1912 |
| AsuHPI | GGTGA | 7 cut(s) | 175, 389, 1165, 1394, 2321, 3029, 3668 |
| AsuII | TTCGAA | 1 cut(s) | 417 |
| AvaI | CYCGRG | 2 cut(s) | 78, 4235 |
| AvaII | GGWCC | 4 cut(s) | 1544, 2219, 3248, 3539 |
| BaeGI | GKGCMC | 5 cut(s) | 500, 1203, 1663, 2141, 3901 |
| BalI | TGGCCA | 1 cut(s) | 3722 |
| BanI | GGYRCC | 3 cut(s) | 3488, 3896, 4004 |
| BanII | GRGCYC | 8 cut(s) | 500, 780, 1098, 1164, 1458, 2177, 2229, 3706 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3053, 3085 |
| BauI | CACGAG | 1 cut(s) | 690 |
| BbrPI | CACGTG | 1 cut(s) | 1760 |
| BbsI | GAAGAC | 1 cut(s) | 2374 |
| Bbv12I | GWGCWC | 9 cut(s) | 1098, 1164, 1203, 1458, 1663, 1963, 2141, 2177, 3706 |
| BbvI | GCAGC | 6 cut(s) | 610, 664, 898, 1090, 2040, 2557 |
| BceAI | ACGGC | 4 cut(s) | 304, 352, 3384, 4079 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1367, 1401, 3489, 3523 |
| BciT130I | CCWGG | 9 cut(s) | 241, 1719, 2230, 2306, 2680, 3041, 3966, 4010, 4167 |
| BclI | TGATCA | 2 cut(s) | 1849, 3133 |
| BcnI | CCSGG | 1 cut(s) | 1912 |
| BcoDI | GTCTC | 5 cut(s) | 284, 717, 832, 1290, 2433 |
| BcuI | ACTAGT | 1 cut(s) | 1319 |
| BfmI | CTRYAG | 2 cut(s) | 325, 2265 |
| BfrI | CTTAAG | 1 cut(s) | 1996 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2827 |
| BglII | AGATCT | 4 cut(s) | 1076, 1944, 2961, 4124 |
| BlpI | GCTNAGC | 1 cut(s) | 1398 |
| BmcAI | AGTACT | 5 cut(s) | 438, 1236, 2248, 2632, 3778 |
| Bme18I | GGWCC | 4 cut(s) | 1544, 2219, 3248, 3539 |
| BmeT110I | CYCGRG | 2 cut(s) | 78, 4235 |
| BmrI | ACTGGG | 1 cut(s) | 1164 |
| BmuI | ACTGGG | 1 cut(s) | 1164 |
| BpiI | GAAGAC | 1 cut(s) | 2374 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 291, 323, 1442, 1474, 3455, 3487, 3693, 3725 |
| BpmI | CTGGAG | 2 cut(s) | 279, 1838 |
| Bpu10I | CCTNAGC | 4 cut(s) | 627, 1571, 2223, 2480 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1398 |
| Bpu14I | TTCGAA | 1 cut(s) | 417 |
| BpuEI | CTTGAG | 1 cut(s) | 552 |
| BpuMI | CCSGG | 1 cut(s) | 1912 |
| BsaAI | YACGTR | 1 cut(s) | 1760 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1791 |
| BsaHI | GRCGYC | 2 cut(s) | 291, 1930 |
| BsaI | GGTCTC | 2 cut(s) | 284, 2433 |
| BsaJI | CCNNGG | 8 cut(s) | 240, 2228, 2305, 2712, 3251, 3474, 3723, 4008 |
| BsaWI | WCCGGW | 3 cut(s) | 2235, 3189, 3953 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 243, 962, 2235, 3026, 4042, 4300 |
| Bse118I | RCCGGY | 1 cut(s) | 59 |
| Bse1I | ACTGG | 7 cut(s) | 35, 1159, 1603, 1632, 3571, 3586, 4135 |
| Bse3DI | GCAATG | 2 cut(s) | 346, 1427 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1791 |
| BseAI | TCCGGA | 1 cut(s) | 2235 |
| BseBI | CCWGG | 9 cut(s) | 241, 1719, 2230, 2306, 2680, 3041, 3966, 4010, 4167 |
| BseDI | CCNNGG | 8 cut(s) | 240, 2228, 2305, 2712, 3251, 3474, 3723, 4008 |
| BseGI | GGATG | 7 cut(s) | 658, 889, 1366, 2860, 3087, 3394, 4018 |
| BseJI | GATNNNNATC | 1 cut(s) | 1791 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 243, 962, 2235, 3026, 4042, 4300 |
| BseMI | GCAATG | 2 cut(s) | 346, 1427 |
| BseNI | ACTGG | 7 cut(s) | 35, 1159, 1603, 1632, 3571, 3586, 4135 |
| BseRI | GAGGAG | 3 cut(s) | 1466, 3024, 4058 |
| BseSI | GKGCMC | 5 cut(s) | 500, 1203, 1663, 2141, 3901 |
| BseX3I | CGGCCG | 1 cut(s) | 1908 |
| BseXI | GCAGC | 6 cut(s) | 610, 664, 898, 1090, 2040, 2557 |
| BseYI | CCCAGC | 3 cut(s) | 818, 2158, 2810 |
| BsgI | GTGCAG | 2 cut(s) | 1331, 1961 |
| Bsh1236I | CGCG | 7 cut(s) | 14, 148, 153, 191, 273, 860, 3309 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1911 |
| BshNI | GGYRCC | 3 cut(s) | 3488, 3896, 4004 |
| BsiEI | CGRYCG | 1 cut(s) | 1911 |
| BsiHKAI | GWGCWC | 9 cut(s) | 1098, 1164, 1203, 1458, 1663, 1963, 2141, 2177, 3706 |
| BsiHKCI | CYCGRG | 2 cut(s) | 78, 4235 |
| BsiSI | CCGG | 6 cut(s) | 60, 297, 1911, 2236, 3190, 3954 |
| BslFI | GGGAC | 6 cut(s) | 77, 152, 2693, 3043, 3379, 4270 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 243, 962, 2235, 3026, 4042, 4300 |
| BsmAI | GTCTC | 5 cut(s) | 284, 717, 832, 1290, 2433 |
| BsmFI | GGGAC | 6 cut(s) | 77, 152, 2693, 3043, 3379, 4270 |
| BsmI | GAATGC | 2 cut(s) | 73, 1759 |
| Bso31I | GGTCTC | 2 cut(s) | 284, 2433 |
| BsoBI | CYCGRG | 2 cut(s) | 78, 4235 |
| Bsp119I | TTCGAA | 1 cut(s) | 417 |
| Bsp120I | GGGCCC | 1 cut(s) | 496 |
| Bsp13I | TCCGGA | 1 cut(s) | 2235 |
| Bsp1407I | TGTACA | 2 cut(s) | 760, 2198 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1398 |
| BspEI | TCCGGA | 1 cut(s) | 2235 |
| BspFNI | CGCG | 7 cut(s) | 14, 148, 153, 191, 273, 860, 3309 |
| BspHI | TCATGA | 2 cut(s) | 796, 2209 |
| BspPI | GGATC | 3 cut(s) | 557, 2066, 2120 |
| BspT104I | TTCGAA | 1 cut(s) | 417 |
| BspT107I | GGYRCC | 3 cut(s) | 3488, 3896, 4004 |
| BspTI | CTTAAG | 1 cut(s) | 1996 |
| BspTNI | GGTCTC | 2 cut(s) | 284, 2433 |
| BsrBI | CCGCTC | 3 cut(s) | 802, 2416, 2475 |
| BsrDI | GCAATG | 2 cut(s) | 346, 1427 |
| BsrFI | RCCGGY | 1 cut(s) | 59 |
| BsrGI | TGTACA | 2 cut(s) | 760, 2198 |
| BsrI | ACTGG | 7 cut(s) | 35, 1159, 1603, 1632, 3571, 3586, 4135 |
| BssAI | RCCGGY | 1 cut(s) | 59 |
| BssECI | CCNNGG | 8 cut(s) | 240, 2228, 2305, 2712, 3251, 3474, 3723, 4008 |
| BssNI | GRCGYC | 2 cut(s) | 291, 1930 |
| BssSI | CACGAG | 1 cut(s) | 690 |
| BssT1I | CCWWGG | 4 cut(s) | 2712, 3251, 3474, 3723 |
| Bst2BI | CACGAG | 1 cut(s) | 690 |
| Bst2UI | CCWGG | 9 cut(s) | 241, 1719, 2230, 2306, 2680, 3041, 3966, 4010, 4167 |
| Bst6I | CTCTTC | 2 cut(s) | 388, 514 |
| BstACI | GRCGYC | 2 cut(s) | 291, 1930 |
| BstAFI | CTTAAG | 1 cut(s) | 1996 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 674, 686 |
| BstAUI | TGTACA | 2 cut(s) | 760, 2198 |
| BstBAI | YACGTR | 1 cut(s) | 1760 |
| BstBI | TTCGAA | 1 cut(s) | 417 |
| BstC8I | GCNNGC | 4 cut(s) | 61, 141, 2823, 4193 |
| BstEII | GGTNACC | 1 cut(s) | 3734 |
| BstF5I | GGATG | 7 cut(s) | 658, 889, 1366, 2860, 3087, 3394, 4018 |
| BstFNI | CGCG | 7 cut(s) | 14, 148, 153, 191, 273, 860, 3309 |
| BstHHI | GCGC | 4 cut(s) | 16, 56, 150, 862 |
| BstMAI | GTCTC | 5 cut(s) | 284, 717, 832, 1290, 2433 |
| BstMCI | CGRYCG | 1 cut(s) | 1911 |
| BstNI | CCWGG | 9 cut(s) | 241, 1719, 2230, 2306, 2680, 3041, 3966, 4010, 4167 |
| BstNSI | RCATGY | 2 cut(s) | 743, 849 |
| BstPI | GGTNACC | 1 cut(s) | 3734 |
| BstSFI | CTRYAG | 2 cut(s) | 325, 2265 |
| BstSLI | GKGCMC | 5 cut(s) | 500, 1203, 1663, 2141, 3901 |
| BstUI | CGCG | 7 cut(s) | 14, 148, 153, 191, 273, 860, 3309 |
| BstV1I | GCAGC | 6 cut(s) | 610, 664, 898, 1090, 2040, 2557 |
| BstV2I | GAAGAC | 1 cut(s) | 2374 |
| BstX2I | RGATCY | 5 cut(s) | 1076, 1944, 2125, 2961, 4124 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4109 |
| BstYI | RGATCY | 5 cut(s) | 1076, 1944, 2125, 2961, 4124 |
| BstZI | CGGCCG | 1 cut(s) | 1908 |
| BtsCI | GGATG | 7 cut(s) | 658, 889, 1366, 2860, 3087, 3394, 4018 |
| BtsI | GCAGTG | 1 cut(s) | 484 |
| BtsIMutI | CAGTG | 9 cut(s) | 28, 484, 985, 2055, 2139, 2201, 2895, 3104, 3317 |
| Cac8I | GCNNGC | 4 cut(s) | 61, 141, 2823, 4193 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3931, 4172 |
| CciI | TCATGA | 2 cut(s) | 796, 2209 |
| CfoI | GCGC | 4 cut(s) | 16, 56, 150, 862 |
| Cfr10I | RCCGGY | 1 cut(s) | 59 |
| CseI | GACGC | 3 cut(s) | 280, 1919, 1998 |
| CsiI | ACCWGGT | 2 cut(s) | 1717, 3039 |
| DraIII | CACNNNGTG | 1 cut(s) | 1667 |
| EaeI | YGGCCR | 4 cut(s) | 32, 1908, 3720, 4163 |
| EagI | CGGCCG | 1 cut(s) | 1908 |
| Eam1104I | CTCTTC | 2 cut(s) | 388, 514 |
| EarI | CTCTTC | 2 cut(s) | 388, 514 |
| EciI | GGCGGA | 1 cut(s) | 4121 |
| Ecl136II | GAGCTC | 5 cut(s) | 1096, 1162, 1456, 2175, 3704 |
| EclXI | CGGCCG | 1 cut(s) | 1908 |
| Eco130I | CCWWGG | 4 cut(s) | 2712, 3251, 3474, 3723 |
| Eco24I | GRGCYC | 8 cut(s) | 500, 780, 1098, 1164, 1458, 2177, 2229, 3706 |
| Eco31I | GGTCTC | 2 cut(s) | 284, 2433 |
| Eco32I | GATATC | 2 cut(s) | 1375, 3843 |
| Eco47I | GGWCC | 4 cut(s) | 1544, 2219, 3248, 3539 |
| Eco52I | CGGCCG | 1 cut(s) | 1908 |
| Eco53kI | GAGCTC | 5 cut(s) | 1096, 1162, 1456, 2175, 3704 |
| Eco57I | CTGAAG | 4 cut(s) | 1215, 2484, 2664, 3198 |
| Eco72I | CACGTG | 1 cut(s) | 1760 |
| Eco88I | CYCGRG | 2 cut(s) | 78, 4235 |
| Eco91I | GGTNACC | 1 cut(s) | 3734 |
| EcoICRI | GAGCTC | 5 cut(s) | 1096, 1162, 1456, 2175, 3704 |
| EcoO109I | RGGNCCY | 4 cut(s) | 496, 1332, 2219, 4169 |
| EcoO65I | GGTNACC | 1 cut(s) | 3734 |
| EcoRI | GAATTC | 2 cut(s) | 1965, 3884 |
| EcoRII | CCWGG | 9 cut(s) | 239, 1717, 2228, 2304, 2678, 3039, 3964, 4008, 4165 |
| EcoRV | GATATC | 2 cut(s) | 1375, 3843 |
| EcoT14I | CCWWGG | 4 cut(s) | 2712, 3251, 3474, 3723 |
| EcoT22I | ATGCAT | 2 cut(s) | 1429, 1801 |
| EcoT38I | GRGCYC | 8 cut(s) | 500, 780, 1098, 1164, 1458, 2177, 2229, 3706 |
| ErhI | CCWWGG | 4 cut(s) | 2712, 3251, 3474, 3723 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2809, 2841 |
| FaqI | GGGAC | 6 cut(s) | 77, 152, 2693, 3043, 3379, 4270 |
| FauI | CCCGC | 4 cut(s) | 148, 153, 795, 3081 |
| FauNDI | CATATG | 1 cut(s) | 2077 |
| FbaI | TGATCA | 2 cut(s) | 1849, 3133 |
| FblI | GTMKAC | 3 cut(s) | 207, 718, 1145 |
| FokI | GGATG | 7 cut(s) | 665, 876, 1373, 2847, 3074, 3401, 4025 |
| FriOI | GRGCYC | 8 cut(s) | 500, 780, 1098, 1164, 1458, 2177, 2229, 3706 |
| GlaI | GCGC | 4 cut(s) | 15, 55, 149, 861 |
| GsaI | CCCAGC | 3 cut(s) | 822, 2162, 2814 |
| GsuI | CTGGAG | 2 cut(s) | 279, 1838 |
| HapII | CCGG | 6 cut(s) | 60, 297, 1911, 2236, 3190, 3954 |
| HgaI | GACGC | 3 cut(s) | 280, 1919, 1998 |
| HhaI | GCGC | 4 cut(s) | 16, 56, 150, 862 |
| Hin1I | GRCGYC | 2 cut(s) | 291, 1930 |
| Hin6I | GCGC | 4 cut(s) | 14, 54, 148, 860 |
| HinP1I | GCGC | 4 cut(s) | 14, 54, 148, 860 |
| HincII | GTYRAC | 7 cut(s) | 1879, 2425, 2914, 3439, 3936, 4050, 4186 |
| HindII | GTYRAC | 7 cut(s) | 1879, 2425, 2914, 3439, 3936, 4050, 4186 |
| HindIII | AAGCTT | 4 cut(s) | 1227, 1999, 3866, 4082 |
| HpaI | GTTAAC | 1 cut(s) | 2914 |
| HpaII | CCGG | 6 cut(s) | 60, 297, 1911, 2236, 3190, 3954 |
| HphI | GGTGA | 7 cut(s) | 175, 389, 1165, 1394, 2321, 3029, 3668 |
| Hpy99I | CGWCG | 6 cut(s) | 40, 122, 182, 215, 296, 1935 |
| HpyCH4IV | ACGT | 2 cut(s) | 210, 1759 |
| HpySE526I | ACGT | 2 cut(s) | 210, 1759 |
| Hsp92I | GRCGYC | 2 cut(s) | 291, 1930 |
| HspAI | GCGC | 4 cut(s) | 14, 54, 148, 860 |
| Kpn2I | TCCGGA | 1 cut(s) | 2235 |
| KpnI | GGTACC | 1 cut(s) | 4008 |
| KroI | GCCGGC | 1 cut(s) | 59 |
| KroNI | GCCGGC | 1 cut(s) | 61 |
| Ksp22I | TGATCA | 2 cut(s) | 1849, 3133 |
| KspAI | GTTAAC | 1 cut(s) | 2914 |
| Lsp1109I | GCAGC | 6 cut(s) | 610, 664, 898, 1090, 2040, 2557 |
| MabI | ACCWGGT | 2 cut(s) | 1717, 3039 |
| MaeII | ACGT | 2 cut(s) | 210, 1759 |
| MbiI | CCGCTC | 3 cut(s) | 802, 2416, 2475 |
| MfeI | CAATTG | 3 cut(s) | 957, 1902, 2883 |
| MflI | RGATCY | 5 cut(s) | 1076, 1944, 2125, 2961, 4124 |
| MlsI | TGGCCA | 1 cut(s) | 3722 |
| MluNI | TGGCCA | 1 cut(s) | 3722 |
| MlyI | GAGTC | 9 cut(s) | 122, 228, 272, 707, 1784, 1981, 2922, 3025, 3181 |
| MmeI | TCCRAC | 4 cut(s) | 1240, 2101, 3668, 3833 |
| Mox20I | TGGCCA | 1 cut(s) | 3722 |
| Mph1103I | ATGCAT | 2 cut(s) | 1429, 1801 |
| MroI | TCCGGA | 1 cut(s) | 2235 |
| MroNI | GCCGGC | 1 cut(s) | 59 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1556 |
| MscI | TGGCCA | 1 cut(s) | 3722 |
| MslI | CAYNNNNRTG | 6 cut(s) | 339, 731, 1752, 1857, 2432, 3894 |
| Msp20I | TGGCCA | 1 cut(s) | 3722 |
| MspA1I | CMGCKG | 4 cut(s) | 1349, 1847, 2031, 3425 |
| MspCI | CTTAAG | 1 cut(s) | 1996 |
| MspI | CCGG | 6 cut(s) | 60, 297, 1911, 2236, 3190, 3954 |
| MunI | CAATTG | 3 cut(s) | 957, 1902, 2883 |
| Mva1269I | GAATGC | 2 cut(s) | 73, 1759 |
| MvaI | CCWGG | 9 cut(s) | 241, 1719, 2230, 2306, 2680, 3041, 3966, 4010, 4167 |
| MvnI | CGCG | 7 cut(s) | 14, 148, 153, 191, 273, 860, 3309 |
| NaeI | GCCGGC | 1 cut(s) | 61 |
| NciI | CCSGG | 1 cut(s) | 1912 |
| NdeI | CATATG | 1 cut(s) | 2077 |
| NgoMIV | GCCGGC | 1 cut(s) | 59 |
| NmeAIII | GCCGAG | 2 cut(s) | 3082, 4243 |
| NmuCI | GTSAC | 6 cut(s) | 181, 320, 1864, 3043, 3656, 3904 |
| NsiI | ATGCAT | 2 cut(s) | 1429, 1801 |
| NspI | RCATGY | 2 cut(s) | 743, 849 |
| NspV | TTCGAA | 1 cut(s) | 417 |
| PaeR7I | CTCGAG | 2 cut(s) | 78, 4235 |
| PagI | TCATGA | 2 cut(s) | 796, 2209 |
| PciI | ACATGT | 1 cut(s) | 845 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PctI | GAATGC | 2 cut(s) | 73, 1759 |
| PdiI | GCCGGC | 1 cut(s) | 61 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1556 |
| PflFI | GACNNNGTC | 2 cut(s) | 89, 290 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 962 |
| PleI | GAGTC | 9 cut(s) | 122, 227, 271, 706, 1783, 1981, 2922, 3025, 3180 |
| PmaCI | CACGTG | 1 cut(s) | 1760 |
| PmlI | CACGTG | 1 cut(s) | 1760 |
| PpsI | GAGTC | 9 cut(s) | 122, 227, 271, 706, 1783, 1981, 2922, 3025, 3180 |
| Ppu21I | YACGTR | 1 cut(s) | 1760 |
| PpuMI | RGGWCCY | 1 cut(s) | 2219 |
| PscI | ACATGT | 1 cut(s) | 845 |
| PshBI | ATTAAT | 2 cut(s) | 912, 3527 |
| PsiI | TTATAA | 1 cut(s) | 933 |
| Psp124BI | GAGCTC | 5 cut(s) | 1098, 1164, 1458, 2177, 3706 |
| Psp5II | RGGWCCY | 1 cut(s) | 2219 |
| Psp6I | CCWGG | 9 cut(s) | 239, 1717, 2228, 2304, 2678, 3039, 3964, 4008, 4165 |
| PspCI | CACGTG | 1 cut(s) | 1760 |
| PspEI | GGTNACC | 1 cut(s) | 3734 |
| PspFI | CCCAGC | 3 cut(s) | 818, 2158, 2810 |
| PspGI | CCWGG | 9 cut(s) | 239, 1717, 2228, 2304, 2678, 3039, 3964, 4008, 4165 |
| PspOMI | GGGCCC | 1 cut(s) | 496 |
| PspPPI | RGGWCCY | 1 cut(s) | 2219 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3931, 4172 |
| PsuI | RGATCY | 5 cut(s) | 1076, 1944, 2125, 2961, 4124 |
| PsyI | GACNNNGTC | 2 cut(s) | 89, 290 |
| PvuII | CAGCTG | 3 cut(s) | 1349, 1847, 3425 |
| RseI | CAYNNNNRTG | 6 cut(s) | 339, 731, 1752, 1857, 2432, 3894 |
| SacI | GAGCTC | 5 cut(s) | 1098, 1164, 1458, 2177, 3706 |
| ScaI | AGTACT | 5 cut(s) | 438, 1236, 2248, 2632, 3778 |
| SchI | GAGTC | 9 cut(s) | 122, 228, 272, 707, 1784, 1981, 2922, 3025, 3181 |
| SexAI | ACCWGGT | 2 cut(s) | 1717, 3039 |
| SfcI | CTRYAG | 2 cut(s) | 325, 2265 |
| Sfr274I | CTCGAG | 2 cut(s) | 78, 4235 |
| SfuI | TTCGAA | 1 cut(s) | 417 |
| SinI | GGWCC | 4 cut(s) | 1544, 2219, 3248, 3539 |
| SlaI | CTCGAG | 2 cut(s) | 78, 4235 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 339, 731, 1752, 1857, 2432, 3894 |
| SmlI | CTYRAG | 4 cut(s) | 78, 567, 1996, 4235 |
| SmoI | CTYRAG | 4 cut(s) | 78, 567, 1996, 4235 |
| SpeI | ACTAGT | 1 cut(s) | 1319 |
| SspI | AATATT | 4 cut(s) | 2355, 2782, 3631, 3814 |
| SstI | GAGCTC | 5 cut(s) | 1098, 1164, 1458, 2177, 3706 |
| StyI | CCWWGG | 4 cut(s) | 2712, 3251, 3474, 3723 |
| TaiI | ACGT | 2 cut(s) | 213, 1762 |
| TaqII | GACCGA | 1 cut(s) | 131 |
| TatI | WGTACW | 8 cut(s) | 436, 760, 1234, 2198, 2246, 2630, 3776, 3825 |
| TscAI | CASTG | 9 cut(s) | 35, 491, 985, 2055, 2146, 2208, 2902, 3111, 3324 |
| TseFI | GTSAC | 6 cut(s) | 181, 320, 1864, 3043, 3656, 3904 |
| TseI | GCWGC | 6 cut(s) | 623, 677, 886, 1103, 2028, 2545 |
| Tsp45I | GTSAC | 6 cut(s) | 181, 320, 1864, 3043, 3656, 3904 |
| TspGWI | ACGGA | 1 cut(s) | 3009 |
| TspRI | CASTG | 9 cut(s) | 35, 491, 985, 2055, 2146, 2208, 2902, 3111, 3324 |
| Tth111I | GACNNNGTC | 2 cut(s) | 89, 290 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 962 |
| Vha464I | CTTAAG | 1 cut(s) | 1996 |
| VneI | GTGCAC | 3 cut(s) | 1199, 1659, 2137 |
| VpaK11BI | GGWCC | 4 cut(s) | 1544, 2219, 3248, 3539 |
| VspI | ATTAAT | 2 cut(s) | 912, 3527 |
| XbaI | TCTAGA | 3 cut(s) | 248, 1969, 4039 |
| XceI | RCATGY | 2 cut(s) | 743, 849 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3499 |
| XhoI | CTCGAG | 2 cut(s) | 78, 4235 |
| XmiI | GTMKAC | 3 cut(s) | 207, 718, 1145 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1556 |
| ZrmI | AGTACT | 5 cut(s) | 438, 1236, 2248, 2632, 3778 |
| Zsp2I | ATGCAT | 2 cut(s) | 1429, 1801 |