Cleavage and polyadenylation specificity factor
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51660 AT5G51660 AT5G51660 AT5G51660 |
| fragaria_vesca | FvH4_7g28210 FvH4_7g28210 FvH4_7g28210 FvH4_7g28210 |
| malus_domestica | MD01G1186100.v1.1 |
| prunus_persica | Prupe.2G282700_v2.0.a1 |
| pyrus_communis | pycom01g19770 |
| rosa_chinensis | RchiOBHm_Chr1g0375181 |
| rosa_laevigata | RLG00000026681 |
| rosa_multiflora | Rmu_sc0000554.1_g000025 |
| rosa_roxburghii | Rroxscaffold_4G00282960 |
| rosa_rugosa | Rorug01G0389000 Rorug01G0389000 |
| rosa_samantha | Rh1AG399600 Rh1CG377800 |
| rosa_wichuraiana | Rw1G035470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1068, 1853 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2619 |
| Acc65I | GGTACC | 1 cut(s) | 3974 |
| AccB1I | GGYRCC | 5 cut(s) | 239, 2048, 3458, 3866, 3974 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1097 |
| AccBSI | CCGCTC | 2 cut(s) | 937, 2818 |
| AccI | GTMKAC | 2 cut(s) | 853, 1280 |
| AccII | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 276, 3279, 3395 |
| AccIII | TCCGGA | 2 cut(s) | 260, 2277 |
| AclI | AACGTT | 1 cut(s) | 1581 |
| AclWI | GGATC | 3 cut(s) | 560, 2108, 2162 |
| AcoI | YGGCCR | 5 cut(s) | 32, 2521, 3115, 3690, 4133 |
| AcuI | CTGAAG | 2 cut(s) | 2730, 3168 |
| AcvI | CACGTG | 1 cut(s) | 1802 |
| AcyI | GRCGYC | 2 cut(s) | 240, 1972 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1097, 2996, 4270 |
| AflII | CTTAAG | 1 cut(s) | 2038 |
| AflIII | ACRYGT | 1 cut(s) | 980 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 127 |
| AhlI | ACTAGT | 1 cut(s) | 1361 |
| AjnI | CCWGG | 8 cut(s) | 861, 1759, 2355, 2744, 3009, 3934, 3978, 4135 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3238, 3270 |
| Alw21I | GWGCWC | 6 cut(s) | 1299, 1500, 2005, 2183, 2219, 3676 |
| Alw26I | GTCTC | 5 cut(s) | 287, 852, 967, 1332, 2484 |
| Alw44I | GTGCAC | 1 cut(s) | 2179 |
| AlwI | GGATC | 3 cut(s) | 560, 2108, 2162 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3941, 4142 |
| Ama87I | CYCGRG | 4 cut(s) | 78, 125, 2693, 4010 |
| Aor13HI | TCCGGA | 2 cut(s) | 260, 2277 |
| ApaI | GGGCCC | 1 cut(s) | 503 |
| ApaLI | GTGCAC | 1 cut(s) | 2179 |
| ApeKI | GCWGC | 5 cut(s) | 626, 812, 1021, 2204, 3987 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 195, 227, 2027, 2059 |
| AseI | ATTAAT | 1 cut(s) | 3497 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1598 |
| Asp718I | GGTACC | 1 cut(s) | 3974 |
| AspLEI | GCGC | 7 cut(s) | 16, 56, 148, 150, 242, 305, 4006 |
| AsuC2I | CCSGG | 2 cut(s) | 503, 2201 |
| AsuHPI | GGTGA | 7 cut(s) | 175, 392, 1300, 1436, 1502, 2372, 3638 |
| AsuII | TTCGAA | 2 cut(s) | 420, 4250 |
| AvaI | CYCGRG | 4 cut(s) | 78, 125, 2693, 4010 |
| AvaII | GGWCC | 5 cut(s) | 1586, 1779, 2261, 2690, 3509 |
| BaeGI | GKGCMC | 3 cut(s) | 503, 2183, 3871 |
| BalI | TGGCCA | 2 cut(s) | 3117, 3692 |
| BanI | GGYRCC | 5 cut(s) | 239, 2048, 3458, 3866, 3974 |
| BanII | GRGCYC | 7 cut(s) | 503, 915, 1299, 1500, 2005, 2219, 3676 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3023, 3055 |
| BauI | CACGAG | 1 cut(s) | 825 |
| BbrPI | CACGTG | 1 cut(s) | 1802 |
| BbsI | GAAGAC | 2 cut(s) | 1812, 2288 |
| Bbv12I | GWGCWC | 6 cut(s) | 1299, 1500, 2005, 2183, 2219, 3676 |
| BbvI | GCAGC | 5 cut(s) | 613, 799, 1033, 2216, 3999 |
| BceAI | ACGGC | 4 cut(s) | 250, 355, 1163, 3354 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3459, 3493 |
| BciT130I | CCWGG | 8 cut(s) | 863, 1761, 2357, 2746, 3011, 3936, 3980, 4137 |
| BclI | TGATCA | 2 cut(s) | 1891, 3103 |
| BcnI | CCSGG | 2 cut(s) | 503, 2201 |
| BcoDI | GTCTC | 5 cut(s) | 287, 852, 967, 1332, 2484 |
| BcuI | ACTAGT | 1 cut(s) | 1361 |
| BfaI | CTAG | 9 cut(s) | 252, 369, 477, 1215, 1248, 1362, 2012, 2471, 3231 |
| BfmI | CTRYAG | 3 cut(s) | 328, 2088, 2307 |
| BfoI | RGCGCY | 2 cut(s) | 243, 306 |
| BfrI | CTTAAG | 1 cut(s) | 2038 |
| BglII | AGATCT | 2 cut(s) | 1211, 1986 |
| BlpI | GCTNAGC | 1 cut(s) | 1440 |
| BmcAI | AGTACT | 3 cut(s) | 441, 2290, 3748 |
| Bme18I | GGWCC | 5 cut(s) | 1586, 1779, 2261, 2690, 3509 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 127 |
| BmeT110I | CYCGRG | 4 cut(s) | 78, 125, 2693, 4010 |
| BmrI | ACTGGG | 2 cut(s) | 158, 1299 |
| BmuI | ACTGGG | 2 cut(s) | 158, 1299 |
| BpiI | GAAGAC | 2 cut(s) | 1812, 2288 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1484, 1516, 3425, 3457, 3663, 3695 |
| BpmI | CTGGAG | 2 cut(s) | 464, 1880 |
| Bpu10I | CCTNAGC | 4 cut(s) | 630, 1613, 2265, 2549 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1440 |
| Bpu14I | TTCGAA | 2 cut(s) | 420, 4250 |
| BpuEI | CTTGAG | 2 cut(s) | 555, 4226 |
| BpuMI | CCSGG | 2 cut(s) | 503, 2201 |
| BsaAI | YACGTR | 2 cut(s) | 1802, 3586 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1833 |
| BsaHI | GRCGYC | 2 cut(s) | 240, 1972 |
| BsaI | GGTCTC | 3 cut(s) | 287, 852, 2484 |
| BsaJI | CCNNGG | 8 cut(s) | 2270, 2356, 3221, 3393, 3444, 3622, 3693, 3978 |
| BsaWI | WCCGGW | 3 cut(s) | 260, 2277, 3159 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1097, 2996, 4270 |
| Bse118I | RCCGGY | 2 cut(s) | 299, 2519 |
| Bse3DI | GCAATG | 3 cut(s) | 349, 487, 1469 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1833 |
| BseAI | TCCGGA | 2 cut(s) | 260, 2277 |
| BseBI | CCWGG | 8 cut(s) | 863, 1761, 2357, 2746, 3011, 3936, 3980, 4137 |
| BseDI | CCNNGG | 8 cut(s) | 2270, 2356, 3221, 3393, 3444, 3622, 3693, 3978 |
| BseGI | GGATG | 9 cut(s) | 108, 793, 1024, 1408, 2196, 2661, 2830, 3364, 3988 |
| BseJI | GATNNNNATC | 1 cut(s) | 1833 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1097, 2996, 4270 |
| BseMI | GCAATG | 3 cut(s) | 349, 487, 1469 |
| BsePI | GCGCGC | 1 cut(s) | 146 |
| BseRI | GAGGAG | 1 cut(s) | 1508 |
| BseSI | GKGCMC | 3 cut(s) | 503, 2183, 3871 |
| BseXI | GCAGC | 5 cut(s) | 613, 799, 1033, 2216, 3999 |
| BseYI | CCCAGC | 1 cut(s) | 953 |
| BsgI | GTGCAG | 2 cut(s) | 2003, 3891 |
| Bsh1236I | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 276, 3279, 3395 |
| BshNI | GGYRCC | 5 cut(s) | 239, 2048, 3458, 3866, 3974 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1299, 1500, 2005, 2183, 2219, 3676 |
| BsiHKCI | CYCGRG | 4 cut(s) | 78, 125, 2693, 4010 |
| BsiSI | CCGG | 8 cut(s) | 60, 261, 300, 503, 2201, 2278, 2520, 3160 |
| BslFI | GGGAC | 6 cut(s) | 77, 152, 2676, 3013, 3349, 4240 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1097, 2996, 4270 |
| BsmAI | GTCTC | 5 cut(s) | 287, 852, 967, 1332, 2484 |
| BsmFI | GGGAC | 6 cut(s) | 77, 152, 2676, 3013, 3349, 4240 |
| BsmI | GAATGC | 2 cut(s) | 73, 1801 |
| Bso31I | GGTCTC | 3 cut(s) | 287, 852, 2484 |
| BsoBI | CYCGRG | 4 cut(s) | 78, 125, 2693, 4010 |
| Bsp119I | TTCGAA | 2 cut(s) | 420, 4250 |
| Bsp120I | GGGCCC | 1 cut(s) | 499 |
| Bsp1286I | GDGCHC | 9 cut(s) | 503, 915, 1299, 1500, 2005, 2183, 2219, 3676, 3871 |
| Bsp13I | TCCGGA | 2 cut(s) | 260, 2277 |
| Bsp1407I | TGTACA | 4 cut(s) | 895, 1351, 2240, 2977 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1440 |
| Bsp19I | CCATGG | 1 cut(s) | 2270 |
| BspEI | TCCGGA | 2 cut(s) | 260, 2277 |
| BspFNI | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 276, 3279, 3395 |
| BspHI | TCATGA | 2 cut(s) | 931, 2251 |
| BspPI | GGATC | 3 cut(s) | 560, 2108, 2162 |
| BspT104I | TTCGAA | 2 cut(s) | 420, 4250 |
| BspT107I | GGYRCC | 5 cut(s) | 239, 2048, 3458, 3866, 3974 |
| BspTI | CTTAAG | 1 cut(s) | 2038 |
| BspTNI | GGTCTC | 3 cut(s) | 287, 852, 2484 |
| BsrBI | CCGCTC | 2 cut(s) | 937, 2818 |
| BsrDI | GCAATG | 3 cut(s) | 349, 487, 1469 |
| BsrFI | RCCGGY | 2 cut(s) | 299, 2519 |
| BsrGI | TGTACA | 4 cut(s) | 895, 1351, 2240, 2977 |
| BssAI | RCCGGY | 2 cut(s) | 299, 2519 |
| BssECI | CCNNGG | 8 cut(s) | 2270, 2356, 3221, 3393, 3444, 3622, 3693, 3978 |
| BssHII | GCGCGC | 1 cut(s) | 146 |
| BssNI | GRCGYC | 2 cut(s) | 240, 1972 |
| BssSI | CACGAG | 1 cut(s) | 825 |
| BssT1I | CCWWGG | 5 cut(s) | 2270, 3221, 3444, 3622, 3693 |
| Bst2BI | CACGAG | 1 cut(s) | 825 |
| Bst2UI | CCWGG | 8 cut(s) | 863, 1761, 2357, 2746, 3011, 3936, 3980, 4137 |
| Bst6I | CTCTTC | 2 cut(s) | 391, 517 |
| BstACI | GRCGYC | 2 cut(s) | 240, 1972 |
| BstAFI | CTTAAG | 1 cut(s) | 2038 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 809, 821 |
| BstAUI | TGTACA | 4 cut(s) | 895, 1351, 2240, 2977 |
| BstBAI | YACGTR | 2 cut(s) | 1802, 3586 |
| BstBI | TTCGAA | 2 cut(s) | 420, 4250 |
| BstC8I | GCNNGC | 5 cut(s) | 141, 148, 301, 3228, 4163 |
| BstDSI | CCRYGG | 2 cut(s) | 2270, 3393 |
| BstEII | GGTNACC | 1 cut(s) | 3704 |
| BstF5I | GGATG | 9 cut(s) | 108, 793, 1024, 1408, 2196, 2661, 2830, 3364, 3988 |
| BstFNI | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 276, 3279, 3395 |
| BstH2I | RGCGCY | 2 cut(s) | 243, 306 |
| BstHHI | GCGC | 7 cut(s) | 16, 56, 148, 150, 242, 305, 4006 |
| BstMAI | GTCTC | 5 cut(s) | 287, 852, 967, 1332, 2484 |
| BstNI | CCWGG | 8 cut(s) | 863, 1761, 2357, 2746, 3011, 3936, 3980, 4137 |
| BstNSI | RCATGY | 1 cut(s) | 984 |
| BstPI | GGTNACC | 1 cut(s) | 3704 |
| BstSFI | CTRYAG | 3 cut(s) | 328, 2088, 2307 |
| BstSLI | GKGCMC | 3 cut(s) | 503, 2183, 3871 |
| BstSNI | TACGTA | 1 cut(s) | 3586 |
| BstUI | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 276, 3279, 3395 |
| BstV1I | GCAGC | 5 cut(s) | 613, 799, 1033, 2216, 3999 |
| BstV2I | GAAGAC | 2 cut(s) | 1812, 2288 |
| BstX2I | RGATCY | 3 cut(s) | 1211, 1986, 2167 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4079 |
| BstYI | RGATCY | 3 cut(s) | 1211, 1986, 2167 |
| BtgI | CCRYGG | 2 cut(s) | 2270, 3393 |
| BtsCI | GGATG | 9 cut(s) | 108, 793, 1024, 1408, 2196, 2661, 2830, 3364, 3988 |
| BtsIMutI | CAGTG | 8 cut(s) | 28, 1221, 2070, 2181, 2243, 2865, 3074, 3287 |
| Cac8I | GCNNGC | 5 cut(s) | 141, 148, 301, 3228, 4163 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3941, 4142 |
| CciI | TCATGA | 2 cut(s) | 931, 2251 |
| CfoI | GCGC | 7 cut(s) | 16, 56, 148, 150, 242, 305, 4006 |
| Cfr10I | RCCGGY | 2 cut(s) | 299, 2519 |
| Cfr42I | CCGCGG | 1 cut(s) | 3396 |
| CseI | GACGC | 1 cut(s) | 1961 |
| CsiI | ACCWGGT | 2 cut(s) | 1759, 3009 |
| DinI | GGCGCC | 1 cut(s) | 241 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2619 |
| DriI | GACNNNNNGTC | 1 cut(s) | 127 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2619 |
| EaeI | YGGCCR | 5 cut(s) | 32, 2521, 3115, 3690, 4133 |
| Eam1104I | CTCTTC | 2 cut(s) | 391, 517 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 127 |
| EarI | CTCTTC | 2 cut(s) | 391, 517 |
| EciI | GGCGGA | 1 cut(s) | 4091 |
| Ecl136II | GAGCTC | 5 cut(s) | 1297, 1498, 2003, 2217, 3674 |
| Eco105I | TACGTA | 1 cut(s) | 3586 |
| Eco130I | CCWWGG | 5 cut(s) | 2270, 3221, 3444, 3622, 3693 |
| Eco24I | GRGCYC | 7 cut(s) | 503, 915, 1299, 1500, 2005, 2219, 3676 |
| Eco31I | GGTCTC | 3 cut(s) | 287, 852, 2484 |
| Eco47I | GGWCC | 5 cut(s) | 1586, 1779, 2261, 2690, 3509 |
| Eco53kI | GAGCTC | 5 cut(s) | 1297, 1498, 2003, 2217, 3674 |
| Eco57I | CTGAAG | 2 cut(s) | 2730, 3168 |
| Eco72I | CACGTG | 1 cut(s) | 1802 |
| Eco88I | CYCGRG | 4 cut(s) | 78, 125, 2693, 4010 |
| Eco91I | GGTNACC | 1 cut(s) | 3704 |
| EcoICRI | GAGCTC | 5 cut(s) | 1297, 1498, 2003, 2217, 3674 |
| EcoO109I | RGGNCCY | 5 cut(s) | 499, 1374, 2261, 2690, 4139 |
| EcoO65I | GGTNACC | 1 cut(s) | 3704 |
| EcoRI | GAATTC | 3 cut(s) | 2007, 3179, 3854 |
| EcoRII | CCWGG | 8 cut(s) | 861, 1759, 2355, 2744, 3009, 3934, 3978, 4135 |
| EcoT14I | CCWWGG | 5 cut(s) | 2270, 3221, 3444, 3622, 3693 |
| EcoT22I | ATGCAT | 2 cut(s) | 489, 1471 |
| EcoT38I | GRGCYC | 7 cut(s) | 503, 915, 1299, 1500, 2005, 2219, 3676 |
| EgeI | GGCGCC | 1 cut(s) | 241 |
| EheI | GGCGCC | 1 cut(s) | 241 |
| ErhI | CCWWGG | 5 cut(s) | 2270, 3221, 3444, 3622, 3693 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2779, 2811 |
| FaqI | GGGAC | 6 cut(s) | 77, 152, 2676, 3013, 3349, 4240 |
| FauI | CCCGC | 2 cut(s) | 148, 930 |
| FbaI | TGATCA | 2 cut(s) | 1891, 3103 |
| FblI | GTMKAC | 2 cut(s) | 853, 1280 |
| FokI | GGATG | 9 cut(s) | 95, 800, 1011, 1415, 2183, 2668, 2817, 3371, 3995 |
| FriOI | GRGCYC | 7 cut(s) | 503, 915, 1299, 1500, 2005, 2219, 3676 |
| FspBI | CTAG | 9 cut(s) | 252, 369, 477, 1215, 1248, 1362, 2012, 2471, 3231 |
| GlaI | GCGC | 7 cut(s) | 15, 55, 147, 149, 241, 304, 4005 |
| GsaI | CCCAGC | 1 cut(s) | 957 |
| GsuI | CTGGAG | 2 cut(s) | 464, 1880 |
| HaeII | RGCGCY | 2 cut(s) | 243, 306 |
| HapII | CCGG | 8 cut(s) | 60, 261, 300, 503, 2201, 2278, 2520, 3160 |
| HgaI | GACGC | 1 cut(s) | 1961 |
| HhaI | GCGC | 7 cut(s) | 16, 56, 148, 150, 242, 305, 4006 |
| Hin1I | GRCGYC | 2 cut(s) | 240, 1972 |
| Hin6I | GCGC | 7 cut(s) | 14, 54, 146, 148, 240, 303, 4004 |
| HinP1I | GCGC | 7 cut(s) | 14, 54, 146, 148, 240, 303, 4004 |
| HincII | GTYRAC | 4 cut(s) | 1579, 1921, 2884, 4156 |
| HindII | GTYRAC | 4 cut(s) | 1579, 1921, 2884, 4156 |
| HindIII | AAGCTT | 3 cut(s) | 2041, 3836, 4052 |
| HpaI | GTTAAC | 2 cut(s) | 1579, 2884 |
| HpaII | CCGG | 8 cut(s) | 60, 261, 300, 503, 2201, 2278, 2520, 3160 |
| HphI | GGTGA | 7 cut(s) | 175, 392, 1300, 1436, 1502, 2372, 3638 |
| Hpy99I | CGWCG | 5 cut(s) | 40, 122, 182, 215, 1977 |
| HpyCH4IV | ACGT | 6 cut(s) | 195, 210, 1581, 1801, 2412, 3585 |
| HpySE526I | ACGT | 6 cut(s) | 195, 210, 1581, 1801, 2412, 3585 |
| Hsp92I | GRCGYC | 2 cut(s) | 240, 1972 |
| HspAI | GCGC | 7 cut(s) | 14, 54, 146, 148, 240, 303, 4004 |
| KasI | GGCGCC | 1 cut(s) | 239 |
| Kpn2I | TCCGGA | 2 cut(s) | 260, 2277 |
| KpnI | GGTACC | 1 cut(s) | 3978 |
| KroI | GCCGGC | 1 cut(s) | 299 |
| KroNI | GCCGGC | 1 cut(s) | 301 |
| Ksp22I | TGATCA | 2 cut(s) | 1891, 3103 |
| KspAI | GTTAAC | 2 cut(s) | 1579, 2884 |
| KspI | CCGCGG | 1 cut(s) | 3396 |
| Lsp1109I | GCAGC | 5 cut(s) | 613, 799, 1033, 2216, 3999 |
| MabI | ACCWGGT | 2 cut(s) | 1759, 3009 |
| MaeI | CTAG | 9 cut(s) | 252, 369, 477, 1215, 1248, 1362, 2012, 2471, 3231 |
| MaeII | ACGT | 6 cut(s) | 195, 210, 1581, 1801, 2412, 3585 |
| MbiI | CCGCTC | 2 cut(s) | 937, 2818 |
| MfeI | CAATTG | 4 cut(s) | 1092, 1944, 2853, 3330 |
| MflI | RGATCY | 3 cut(s) | 1211, 1986, 2167 |
| MhlI | GDGCHC | 9 cut(s) | 503, 915, 1299, 1500, 2005, 2183, 2219, 3676, 3871 |
| MlsI | TGGCCA | 2 cut(s) | 3117, 3692 |
| MluNI | TGGCCA | 2 cut(s) | 3117, 3692 |
| Mly113I | GGCGCC | 1 cut(s) | 240 |
| MlyI | GAGTC | 7 cut(s) | 137, 842, 1826, 2023, 2892, 2995, 3151 |
| MmeI | TCCRAC | 5 cut(s) | 640, 2143, 3638, 3803, 4173 |
| Mox20I | TGGCCA | 2 cut(s) | 3117, 3692 |
| Mph1103I | ATGCAT | 2 cut(s) | 489, 1471 |
| MreI | CGCCGGCG | 1 cut(s) | 299 |
| MroI | TCCGGA | 2 cut(s) | 260, 2277 |
| MroNI | GCCGGC | 1 cut(s) | 299 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1598 |
| MscI | TGGCCA | 2 cut(s) | 3117, 3692 |
| MslI | CAYNNNNRTG | 5 cut(s) | 342, 1794, 2483, 3245, 3864 |
| Msp20I | TGGCCA | 2 cut(s) | 3117, 3692 |
| MspA1I | CMGCKG | 3 cut(s) | 1391, 1889, 3395 |
| MspCI | CTTAAG | 1 cut(s) | 2038 |
| MspI | CCGG | 8 cut(s) | 60, 261, 300, 503, 2201, 2278, 2520, 3160 |
| MunI | CAATTG | 4 cut(s) | 1092, 1944, 2853, 3330 |
| Mva1269I | GAATGC | 2 cut(s) | 73, 1801 |
| MvaI | CCWGG | 8 cut(s) | 863, 1761, 2357, 2746, 3011, 3936, 3980, 4137 |
| MvnI | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 276, 3279, 3395 |
| NaeI | GCCGGC | 1 cut(s) | 301 |
| NarI | GGCGCC | 1 cut(s) | 240 |
| NciI | CCSGG | 2 cut(s) | 503, 2201 |
| NcoI | CCATGG | 1 cut(s) | 2270 |
| NgoMIV | GCCGGC | 1 cut(s) | 299 |
| NmeAIII | GCCGAG | 1 cut(s) | 3052 |
| NmuCI | GTSAC | 5 cut(s) | 181, 1906, 3013, 3626, 3874 |
| NsiI | ATGCAT | 2 cut(s) | 489, 1471 |
| NspI | RCATGY | 1 cut(s) | 984 |
| NspV | TTCGAA | 2 cut(s) | 420, 4250 |
| PaeR7I | CTCGAG | 3 cut(s) | 78, 125, 4010 |
| PagI | TCATGA | 2 cut(s) | 931, 2251 |
| PauI | GCGCGC | 1 cut(s) | 146 |
| PciI | ACATGT | 1 cut(s) | 980 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PctI | GAATGC | 2 cut(s) | 73, 1801 |
| PdiI | GCCGGC | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1598 |
| PflFI | GACNNNGTC | 2 cut(s) | 89, 293 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1097 |
| PleI | GAGTC | 7 cut(s) | 136, 841, 1825, 2023, 2892, 2995, 3150 |
| PluTI | GGCGCC | 1 cut(s) | 243 |
| PmaCI | CACGTG | 1 cut(s) | 1802 |
| PmlI | CACGTG | 1 cut(s) | 1802 |
| PpsI | GAGTC | 7 cut(s) | 136, 841, 1825, 2023, 2892, 2995, 3150 |
| Ppu21I | YACGTR | 2 cut(s) | 1802, 3586 |
| PpuMI | RGGWCCY | 2 cut(s) | 2261, 2690 |
| PscI | ACATGT | 1 cut(s) | 980 |
| PshBI | ATTAAT | 1 cut(s) | 3497 |
| PsiI | TTATAA | 2 cut(s) | 1068, 1853 |
| Psp1406I | AACGTT | 1 cut(s) | 1581 |
| Psp5II | RGGWCCY | 2 cut(s) | 2261, 2690 |
| Psp6I | CCWGG | 8 cut(s) | 861, 1759, 2355, 2744, 3009, 3934, 3978, 4135 |
| PspCI | CACGTG | 1 cut(s) | 1802 |
| PspEI | GGTNACC | 1 cut(s) | 3704 |
| PspFI | CCCAGC | 1 cut(s) | 953 |
| PspGI | CCWGG | 8 cut(s) | 861, 1759, 2355, 2744, 3009, 3934, 3978, 4135 |
| PspOMI | GGGCCC | 1 cut(s) | 499 |
| PspPPI | RGGWCCY | 2 cut(s) | 2261, 2690 |
| PspXI | VCTCGAGB | 1 cut(s) | 125 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3941, 4142 |
| PsuI | RGATCY | 3 cut(s) | 1211, 1986, 2167 |
| PsyI | GACNNNGTC | 2 cut(s) | 89, 293 |
| PteI | GCGCGC | 1 cut(s) | 146 |
| PvuII | CAGCTG | 2 cut(s) | 1391, 1889 |
| RseI | CAYNNNNRTG | 5 cut(s) | 342, 1794, 2483, 3245, 3864 |
| SacI | GAGCTC | 5 cut(s) | 1299, 1500, 2005, 2219, 3676 |
| SacII | CCGCGG | 1 cut(s) | 3396 |
| ScaI | AGTACT | 3 cut(s) | 441, 2290, 3748 |
| SchI | GAGTC | 7 cut(s) | 137, 842, 1826, 2023, 2892, 2995, 3151 |
| SduI | GDGCHC | 9 cut(s) | 503, 915, 1299, 1500, 2005, 2183, 2219, 3676, 3871 |
| SexAI | ACCWGGT | 2 cut(s) | 1759, 3009 |
| SfcI | CTRYAG | 3 cut(s) | 328, 2088, 2307 |
| SfoI | GGCGCC | 1 cut(s) | 241 |
| Sfr274I | CTCGAG | 3 cut(s) | 78, 125, 4010 |
| Sfr303I | CCGCGG | 1 cut(s) | 3396 |
| SfuI | TTCGAA | 2 cut(s) | 420, 4250 |
| SgrAI | CRCCGGYG | 1 cut(s) | 299 |
| SgrBI | CCGCGG | 1 cut(s) | 3396 |
| SinI | GGWCC | 5 cut(s) | 1586, 1779, 2261, 2690, 3509 |
| SlaI | CTCGAG | 3 cut(s) | 78, 125, 4010 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 342, 1794, 2483, 3245, 3864 |
| SmlI | CTYRAG | 6 cut(s) | 78, 125, 570, 2038, 4010, 4205 |
| SmoI | CTYRAG | 6 cut(s) | 78, 125, 570, 2038, 4010, 4205 |
| SnaBI | TACGTA | 1 cut(s) | 3586 |
| SpeI | ACTAGT | 1 cut(s) | 1361 |
| SspDI | GGCGCC | 1 cut(s) | 239 |
| SspI | AATATT | 4 cut(s) | 681, 2406, 2643, 3601 |
| SspMI | CTAG | 9 cut(s) | 252, 369, 477, 1215, 1248, 1362, 2012, 2471, 3231 |
| SstI | GAGCTC | 5 cut(s) | 1299, 1500, 2005, 2219, 3676 |
| StyI | CCWWGG | 5 cut(s) | 2270, 3221, 3444, 3622, 3693 |
| TaiI | ACGT | 6 cut(s) | 198, 213, 1584, 1804, 2415, 3588 |
| TaqII | GACCGA | 1 cut(s) | 131 |
| TatI | WGTACW | 7 cut(s) | 439, 895, 1351, 2240, 2288, 2977, 3746 |
| TauI | GCSGC | 9 cut(s) | 14, 146, 153, 191, 240, 279, 1952, 2394, 2821 |
| TscAI | CASTG | 8 cut(s) | 35, 1228, 2077, 2188, 2250, 2872, 3081, 3294 |
| TseFI | GTSAC | 5 cut(s) | 181, 1906, 3013, 3626, 3874 |
| TseI | GCWGC | 5 cut(s) | 626, 812, 1021, 2204, 3987 |
| Tsp45I | GTSAC | 5 cut(s) | 181, 1906, 3013, 3626, 3874 |
| TspGWI | ACGGA | 4 cut(s) | 2106, 2979, 3046, 4179 |
| TspRI | CASTG | 8 cut(s) | 35, 1228, 2077, 2188, 2250, 2872, 3081, 3294 |
| Tth111I | GACNNNGTC | 2 cut(s) | 89, 293 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1097 |
| Vha464I | CTTAAG | 1 cut(s) | 2038 |
| VneI | GTGCAC | 1 cut(s) | 2179 |
| VpaK11BI | GGWCC | 5 cut(s) | 1586, 1779, 2261, 2690, 3509 |
| VspI | ATTAAT | 1 cut(s) | 3497 |
| XbaI | TCTAGA | 2 cut(s) | 251, 2011 |
| XceI | RCATGY | 1 cut(s) | 984 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3469 |
| XhoI | CTCGAG | 3 cut(s) | 78, 125, 4010 |
| XmiI | GTMKAC | 2 cut(s) | 853, 1280 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1598 |
| XspI | CTAG | 9 cut(s) | 252, 369, 477, 1215, 1248, 1362, 2012, 2471, 3231 |
| ZrmI | AGTACT | 3 cut(s) | 441, 2290, 3748 |
| Zsp2I | ATGCAT | 2 cut(s) | 489, 1471 |