Cleavage and polyadenylation specificity factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51660 AT5G51660 AT5G51660 AT5G51660 |
| fragaria_vesca | FvH4_7g28210 FvH4_7g28210 FvH4_7g28210 FvH4_7g28210 |
| malus_domestica | MD01G1186100.v1.1 |
| prunus_persica | Prupe.2G282700_v2.0.a1 |
| pyrus_communis | pycom01g19770 |
| rosa_chinensis | RchiOBHm_Chr1g0375181 |
| rosa_laevigata | RLG00000026681 |
| rosa_multiflora | Rmu_sc0000554.1_g000025 |
| rosa_roxburghii | Rroxscaffold_4G00282960 |
| rosa_rugosa | Rorug01G0389000 Rorug01G0389000 |
| rosa_samantha | Rh1AG399600 Rh1CG377800 |
| rosa_wichuraiana | Rw1G035470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 915, 1793 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2559 |
| Acc65I | GGTACC | 1 cut(s) | 4010 |
| AccB1I | GGYRCC | 5 cut(s) | 239, 1988, 3494, 3902, 4010 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 944 |
| AccBSI | CCGCTC | 2 cut(s) | 784, 2854 |
| AccI | GTMKAC | 3 cut(s) | 207, 700, 1127 |
| AccII | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 255, 3315, 3431 |
| AccIII | TCCGGA | 1 cut(s) | 2217 |
| AclI | AACGTT | 1 cut(s) | 1521 |
| AclWI | GGATC | 3 cut(s) | 539, 2048, 2102 |
| AcoI | YGGCCR | 4 cut(s) | 32, 3151, 3726, 4169 |
| AcuI | CTGAAG | 3 cut(s) | 1197, 2670, 3204 |
| AcvI | CACGTG | 1 cut(s) | 1742 |
| AcyI | GRCGYC | 4 cut(s) | 240, 273, 1912, 3903 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 944, 3032, 4306 |
| AflII | CTTAAG | 1 cut(s) | 1978 |
| AflIII | ACRYGT | 1 cut(s) | 827 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 127 |
| AhlI | ACTAGT | 1 cut(s) | 1301 |
| AjnI | CCWGG | 8 cut(s) | 708, 1699, 2295, 2684, 3045, 3970, 4014, 4171 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 3274, 3306, 3882, 3914 |
| Alw21I | GWGCWC | 6 cut(s) | 673, 1146, 1440, 1945, 2123, 2159 |
| Alw26I | GTCTC | 5 cut(s) | 266, 699, 814, 1272, 2424 |
| Alw44I | GTGCAC | 1 cut(s) | 2119 |
| AlwI | GGATC | 3 cut(s) | 539, 2048, 2102 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3977, 4178 |
| Ama87I | CYCGRG | 3 cut(s) | 78, 125, 4046 |
| Aor13HI | TCCGGA | 1 cut(s) | 2217 |
| ApaI | GGGCCC | 1 cut(s) | 482 |
| ApaLI | GTGCAC | 1 cut(s) | 2119 |
| ApeKI | GCWGC | 6 cut(s) | 605, 659, 868, 1085, 2144, 4023 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 195, 227, 1967, 1999 |
| AseI | ATTAAT | 1 cut(s) | 3533 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1538 |
| Asp718I | GGTACC | 1 cut(s) | 4010 |
| AspLEI | GCGC | 7 cut(s) | 16, 56, 148, 242, 284, 3905, 4042 |
| AsuC2I | CCSGG | 2 cut(s) | 1138, 2141 |
| AsuHPI | GGTGA | 6 cut(s) | 175, 371, 1147, 1376, 2312, 3674 |
| AsuII | TTCGAA | 2 cut(s) | 399, 4286 |
| AvaI | CYCGRG | 3 cut(s) | 78, 125, 4046 |
| AvaII | GGWCC | 4 cut(s) | 1526, 1719, 2201, 3545 |
| BaeGI | GKGCMC | 2 cut(s) | 482, 2123 |
| BalI | TGGCCA | 2 cut(s) | 3153, 3728 |
| BanI | GGYRCC | 5 cut(s) | 239, 1988, 3494, 3902, 4010 |
| BanII | GRGCYC | 7 cut(s) | 482, 762, 1146, 1440, 1945, 2159, 3712 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 3059, 3091 |
| BauI | CACGAG | 1 cut(s) | 672 |
| BbrPI | CACGTG | 1 cut(s) | 1742 |
| BbsI | GAAGAC | 2 cut(s) | 1752, 2228 |
| Bbv12I | GWGCWC | 6 cut(s) | 673, 1146, 1440, 1945, 2123, 2159 |
| BbvI | GCAGC | 6 cut(s) | 592, 646, 880, 1072, 2156, 4035 |
| BceAI | ACGGC | 5 cut(s) | 250, 286, 334, 1010, 3390 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3495, 3529 |
| BciT130I | CCWGG | 8 cut(s) | 710, 1701, 2297, 2686, 3047, 3972, 4016, 4173 |
| BclI | TGATCA | 2 cut(s) | 1831, 3139 |
| BcnI | CCSGG | 2 cut(s) | 1138, 2141 |
| BcoDI | GTCTC | 5 cut(s) | 266, 699, 814, 1272, 2424 |
| BcuI | ACTAGT | 1 cut(s) | 1301 |
| BfaI | CTAG | 9 cut(s) | 348, 456, 1062, 1095, 1302, 1952, 2411, 2733, 3267 |
| BfmI | CTRYAG | 3 cut(s) | 307, 2028, 2247 |
| BfoI | RGCGCY | 3 cut(s) | 243, 285, 3906 |
| BfrI | CTTAAG | 1 cut(s) | 1978 |
| BglII | AGATCT | 2 cut(s) | 1058, 1926 |
| BlpI | GCTNAGC | 1 cut(s) | 1380 |
| BmcAI | AGTACT | 3 cut(s) | 1218, 2230, 3784 |
| Bme18I | GGWCC | 4 cut(s) | 1526, 1719, 2201, 3545 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 127 |
| BmeT110I | CYCGRG | 3 cut(s) | 78, 125, 4046 |
| BpiI | GAAGAC | 2 cut(s) | 1752, 2228 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1424, 1456, 3461, 3493 |
| BpmI | CTGGAG | 1 cut(s) | 1820 |
| Bpu10I | CCTNAGC | 4 cut(s) | 609, 1553, 2205, 2489 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1380 |
| Bpu14I | TTCGAA | 2 cut(s) | 399, 4286 |
| BpuEI | CTTGAG | 2 cut(s) | 534, 4262 |
| BpuMI | CCSGG | 2 cut(s) | 1138, 2141 |
| BsaAI | YACGTR | 2 cut(s) | 1742, 3622 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1773 |
| BsaHI | GRCGYC | 4 cut(s) | 240, 273, 1912, 3903 |
| BsaI | GGTCTC | 3 cut(s) | 266, 699, 2424 |
| BsaWI | WCCGGW | 3 cut(s) | 2217, 2759, 3195 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 944, 3032, 4306 |
| Bse118I | RCCGGY | 2 cut(s) | 278, 2459 |
| Bse3DI | GCAATG | 4 cut(s) | 328, 466, 1409, 2787 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1773 |
| BseAI | TCCGGA | 1 cut(s) | 2217 |
| BseBI | CCWGG | 8 cut(s) | 710, 1701, 2297, 2686, 3047, 3972, 4016, 4173 |
| BseGI | GGATG | 9 cut(s) | 108, 640, 871, 1348, 2136, 2601, 2866, 3400, 4024 |
| BseJI | GATNNNNATC | 1 cut(s) | 1773 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 944, 3032, 4306 |
| BseMI | GCAATG | 4 cut(s) | 328, 466, 1409, 2787 |
| BseRI | GAGGAG | 2 cut(s) | 1448, 4064 |
| BseSI | GKGCMC | 2 cut(s) | 482, 2123 |
| BseXI | GCAGC | 6 cut(s) | 592, 646, 880, 1072, 2156, 4035 |
| BseYI | CCCAGC | 1 cut(s) | 800 |
| BsgI | GTGCAG | 3 cut(s) | 1313, 1943, 3927 |
| Bsh1236I | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 255, 3315, 3431 |
| BshNI | GGYRCC | 5 cut(s) | 239, 1988, 3494, 3902, 4010 |
| BsiHKAI | GWGCWC | 6 cut(s) | 673, 1146, 1440, 1945, 2123, 2159 |
| BsiHKCI | CYCGRG | 3 cut(s) | 78, 125, 4046 |
| BsiSI | CCGG | 8 cut(s) | 60, 279, 1137, 2141, 2218, 2460, 2760, 3196 |
| BslFI | GGGAC | 5 cut(s) | 77, 152, 3049, 3385, 4276 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 944, 3032, 4306 |
| BsmAI | GTCTC | 5 cut(s) | 266, 699, 814, 1272, 2424 |
| BsmFI | GGGAC | 5 cut(s) | 77, 152, 3049, 3385, 4276 |
| BsmI | GAATGC | 1 cut(s) | 1741 |
| Bso31I | GGTCTC | 3 cut(s) | 266, 699, 2424 |
| BsoBI | CYCGRG | 3 cut(s) | 78, 125, 4046 |
| Bsp119I | TTCGAA | 2 cut(s) | 399, 4286 |
| Bsp120I | GGGCCC | 1 cut(s) | 478 |
| Bsp1286I | GDGCHC | 9 cut(s) | 482, 673, 762, 1146, 1440, 1945, 2123, 2159, 3712 |
| Bsp13I | TCCGGA | 1 cut(s) | 2217 |
| Bsp1407I | TGTACA | 3 cut(s) | 742, 2180, 3013 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1380 |
| Bsp19I | CCATGG | 1 cut(s) | 2210 |
| Bsp68I | TCGCGA | 1 cut(s) | 153 |
| BspEI | TCCGGA | 1 cut(s) | 2217 |
| BspFNI | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 255, 3315, 3431 |
| BspHI | TCATGA | 2 cut(s) | 778, 2191 |
| BspPI | GGATC | 3 cut(s) | 539, 2048, 2102 |
| BspT104I | TTCGAA | 2 cut(s) | 399, 4286 |
| BspT107I | GGYRCC | 5 cut(s) | 239, 1988, 3494, 3902, 4010 |
| BspTI | CTTAAG | 1 cut(s) | 1978 |
| BspTNI | GGTCTC | 3 cut(s) | 266, 699, 2424 |
| BsrBI | CCGCTC | 2 cut(s) | 784, 2854 |
| BsrDI | GCAATG | 4 cut(s) | 328, 466, 1409, 2787 |
| BsrFI | RCCGGY | 2 cut(s) | 278, 2459 |
| BsrGI | TGTACA | 3 cut(s) | 742, 2180, 3013 |
| BssAI | RCCGGY | 2 cut(s) | 278, 2459 |
| BssNI | GRCGYC | 4 cut(s) | 240, 273, 1912, 3903 |
| BssSI | CACGAG | 1 cut(s) | 672 |
| BssT1I | CCWWGG | 6 cut(s) | 2210, 2718, 3257, 3480, 3658, 3729 |
| Bst2BI | CACGAG | 1 cut(s) | 672 |
| Bst2UI | CCWGG | 8 cut(s) | 710, 1701, 2297, 2686, 3047, 3972, 4016, 4173 |
| Bst6I | CTCTTC | 2 cut(s) | 370, 496 |
| BstACI | GRCGYC | 4 cut(s) | 240, 273, 1912, 3903 |
| BstAFI | CTTAAG | 1 cut(s) | 1978 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 656, 668 |
| BstAUI | TGTACA | 3 cut(s) | 742, 2180, 3013 |
| BstBAI | YACGTR | 2 cut(s) | 1742, 3622 |
| BstBI | TTCGAA | 2 cut(s) | 399, 4286 |
| BstC8I | GCNNGC | 4 cut(s) | 141, 280, 3264, 4199 |
| BstDSI | CCRYGG | 2 cut(s) | 2210, 3429 |
| BstEII | GGTNACC | 1 cut(s) | 3740 |
| BstF5I | GGATG | 9 cut(s) | 108, 640, 871, 1348, 2136, 2601, 2866, 3400, 4024 |
| BstFNI | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 255, 3315, 3431 |
| BstH2I | RGCGCY | 3 cut(s) | 243, 285, 3906 |
| BstHHI | GCGC | 7 cut(s) | 16, 56, 148, 242, 284, 3905, 4042 |
| BstMAI | GTCTC | 5 cut(s) | 266, 699, 814, 1272, 2424 |
| BstNI | CCWGG | 8 cut(s) | 710, 1701, 2297, 2686, 3047, 3972, 4016, 4173 |
| BstNSI | RCATGY | 1 cut(s) | 831 |
| BstPI | GGTNACC | 1 cut(s) | 3740 |
| BstSFI | CTRYAG | 3 cut(s) | 307, 2028, 2247 |
| BstSLI | GKGCMC | 2 cut(s) | 482, 2123 |
| BstSNI | TACGTA | 1 cut(s) | 3622 |
| BstUI | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 255, 3315, 3431 |
| BstV1I | GCAGC | 6 cut(s) | 592, 646, 880, 1072, 2156, 4035 |
| BstV2I | GAAGAC | 2 cut(s) | 1752, 2228 |
| BstX2I | RGATCY | 3 cut(s) | 1058, 1926, 2107 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4115 |
| BstYI | RGATCY | 3 cut(s) | 1058, 1926, 2107 |
| BtgI | CCRYGG | 2 cut(s) | 2210, 3429 |
| BtsCI | GGATG | 9 cut(s) | 108, 640, 871, 1348, 2136, 2601, 2866, 3400, 4024 |
| BtsIMutI | CAGTG | 8 cut(s) | 28, 1068, 2010, 2121, 2183, 2901, 3110, 3323 |
| BtuMI | TCGCGA | 1 cut(s) | 153 |
| Cac8I | GCNNGC | 4 cut(s) | 141, 280, 3264, 4199 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3977, 4178 |
| CciI | TCATGA | 2 cut(s) | 778, 2191 |
| CfoI | GCGC | 7 cut(s) | 16, 56, 148, 242, 284, 3905, 4042 |
| Cfr10I | RCCGGY | 2 cut(s) | 278, 2459 |
| Cfr42I | CCGCGG | 1 cut(s) | 3432 |
| CseI | GACGC | 3 cut(s) | 137, 262, 1901 |
| CsiI | ACCWGGT | 2 cut(s) | 1699, 3045 |
| DinI | GGCGCC | 2 cut(s) | 241, 3904 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2559 |
| DriI | GACNNNNNGTC | 1 cut(s) | 127 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2559 |
| EaeI | YGGCCR | 4 cut(s) | 32, 3151, 3726, 4169 |
| Eam1104I | CTCTTC | 2 cut(s) | 370, 496 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 127 |
| EarI | CTCTTC | 2 cut(s) | 370, 496 |
| EciI | GGCGGA | 1 cut(s) | 4127 |
| Ecl136II | GAGCTC | 4 cut(s) | 1144, 1438, 1943, 2157 |
| Eco105I | TACGTA | 1 cut(s) | 3622 |
| Eco130I | CCWWGG | 6 cut(s) | 2210, 2718, 3257, 3480, 3658, 3729 |
| Eco24I | GRGCYC | 7 cut(s) | 482, 762, 1146, 1440, 1945, 2159, 3712 |
| Eco31I | GGTCTC | 3 cut(s) | 266, 699, 2424 |
| Eco47I | GGWCC | 4 cut(s) | 1526, 1719, 2201, 3545 |
| Eco53kI | GAGCTC | 4 cut(s) | 1144, 1438, 1943, 2157 |
| Eco57I | CTGAAG | 3 cut(s) | 1197, 2670, 3204 |
| Eco72I | CACGTG | 1 cut(s) | 1742 |
| Eco88I | CYCGRG | 3 cut(s) | 78, 125, 4046 |
| Eco91I | GGTNACC | 1 cut(s) | 3740 |
| EcoICRI | GAGCTC | 4 cut(s) | 1144, 1438, 1943, 2157 |
| EcoO109I | RGGNCCY | 4 cut(s) | 478, 1314, 2201, 4175 |
| EcoO65I | GGTNACC | 1 cut(s) | 3740 |
| EcoRI | GAATTC | 3 cut(s) | 1947, 3215, 3890 |
| EcoRII | CCWGG | 8 cut(s) | 708, 1699, 2295, 2684, 3045, 3970, 4014, 4171 |
| EcoT14I | CCWWGG | 6 cut(s) | 2210, 2718, 3257, 3480, 3658, 3729 |
| EcoT22I | ATGCAT | 2 cut(s) | 468, 1411 |
| EcoT38I | GRGCYC | 7 cut(s) | 482, 762, 1146, 1440, 1945, 2159, 3712 |
| EgeI | GGCGCC | 2 cut(s) | 241, 3904 |
| EheI | GGCGCC | 2 cut(s) | 241, 3904 |
| ErhI | CCWWGG | 6 cut(s) | 2210, 2718, 3257, 3480, 3658, 3729 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2815, 2847 |
| FaqI | GGGAC | 5 cut(s) | 77, 152, 3049, 3385, 4276 |
| FauI | CCCGC | 2 cut(s) | 148, 777 |
| FauNDI | CATATG | 1 cut(s) | 2728 |
| FbaI | TGATCA | 2 cut(s) | 1831, 3139 |
| FblI | GTMKAC | 3 cut(s) | 207, 700, 1127 |
| FokI | GGATG | 9 cut(s) | 95, 647, 858, 1355, 2123, 2608, 2853, 3407, 4031 |
| FriOI | GRGCYC | 7 cut(s) | 482, 762, 1146, 1440, 1945, 2159, 3712 |
| FspBI | CTAG | 9 cut(s) | 348, 456, 1062, 1095, 1302, 1952, 2411, 2733, 3267 |
| GlaI | GCGC | 7 cut(s) | 15, 55, 147, 241, 283, 3904, 4041 |
| GsaI | CCCAGC | 1 cut(s) | 804 |
| GsuI | CTGGAG | 1 cut(s) | 1820 |
| HaeII | RGCGCY | 3 cut(s) | 243, 285, 3906 |
| HapII | CCGG | 8 cut(s) | 60, 279, 1137, 2141, 2218, 2460, 2760, 3196 |
| HgaI | GACGC | 3 cut(s) | 137, 262, 1901 |
| HhaI | GCGC | 7 cut(s) | 16, 56, 148, 242, 284, 3905, 4042 |
| Hin1I | GRCGYC | 4 cut(s) | 240, 273, 1912, 3903 |
| Hin6I | GCGC | 7 cut(s) | 14, 54, 146, 240, 282, 3903, 4040 |
| HinP1I | GCGC | 7 cut(s) | 14, 54, 146, 240, 282, 3903, 4040 |
| HincII | GTYRAC | 5 cut(s) | 1329, 1519, 1861, 2920, 4192 |
| HindII | GTYRAC | 5 cut(s) | 1329, 1519, 1861, 2920, 4192 |
| HindIII | AAGCTT | 4 cut(s) | 1209, 1981, 3872, 4088 |
| HpaI | GTTAAC | 2 cut(s) | 1519, 2920 |
| HpaII | CCGG | 8 cut(s) | 60, 279, 1137, 2141, 2218, 2460, 2760, 3196 |
| HphI | GGTGA | 6 cut(s) | 175, 371, 1147, 1376, 2312, 3674 |
| Hpy99I | CGWCG | 8 cut(s) | 40, 122, 153, 182, 215, 278, 1228, 1917 |
| HpyCH4IV | ACGT | 7 cut(s) | 195, 210, 1223, 1521, 1741, 2352, 3621 |
| HpySE526I | ACGT | 7 cut(s) | 195, 210, 1223, 1521, 1741, 2352, 3621 |
| Hsp92I | GRCGYC | 4 cut(s) | 240, 273, 1912, 3903 |
| HspAI | GCGC | 7 cut(s) | 14, 54, 146, 240, 282, 3903, 4040 |
| KasI | GGCGCC | 2 cut(s) | 239, 3902 |
| Kpn2I | TCCGGA | 1 cut(s) | 2217 |
| KpnI | GGTACC | 1 cut(s) | 4014 |
| KroI | GCCGGC | 1 cut(s) | 278 |
| KroNI | GCCGGC | 1 cut(s) | 280 |
| Ksp22I | TGATCA | 2 cut(s) | 1831, 3139 |
| KspAI | GTTAAC | 2 cut(s) | 1519, 2920 |
| KspI | CCGCGG | 1 cut(s) | 3432 |
| Lsp1109I | GCAGC | 6 cut(s) | 592, 646, 880, 1072, 2156, 4035 |
| MabI | ACCWGGT | 2 cut(s) | 1699, 3045 |
| MaeI | CTAG | 9 cut(s) | 348, 456, 1062, 1095, 1302, 1952, 2411, 2733, 3267 |
| MaeII | ACGT | 7 cut(s) | 195, 210, 1223, 1521, 1741, 2352, 3621 |
| MbiI | CCGCTC | 2 cut(s) | 784, 2854 |
| MfeI | CAATTG | 4 cut(s) | 939, 1884, 2889, 3366 |
| MflI | RGATCY | 3 cut(s) | 1058, 1926, 2107 |
| MhlI | GDGCHC | 9 cut(s) | 482, 673, 762, 1146, 1440, 1945, 2123, 2159, 3712 |
| MlsI | TGGCCA | 2 cut(s) | 3153, 3728 |
| MluNI | TGGCCA | 2 cut(s) | 3153, 3728 |
| Mly113I | GGCGCC | 2 cut(s) | 240, 3903 |
| MlyI | GAGTC | 8 cut(s) | 137, 689, 1766, 1963, 2735, 2928, 3031, 3187 |
| MmeI | TCCRAC | 5 cut(s) | 1222, 2083, 3674, 3839, 4209 |
| Mox20I | TGGCCA | 2 cut(s) | 3153, 3728 |
| Mph1103I | ATGCAT | 2 cut(s) | 468, 1411 |
| MreI | CGCCGGCG | 1 cut(s) | 278 |
| MroI | TCCGGA | 1 cut(s) | 2217 |
| MroNI | GCCGGC | 1 cut(s) | 278 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1538 |
| MscI | TGGCCA | 2 cut(s) | 3153, 3728 |
| MslI | CAYNNNNRTG | 4 cut(s) | 321, 1734, 2423, 3281 |
| Msp20I | TGGCCA | 2 cut(s) | 3153, 3728 |
| MspA1I | CMGCKG | 2 cut(s) | 1829, 3431 |
| MspCI | CTTAAG | 1 cut(s) | 1978 |
| MspI | CCGG | 8 cut(s) | 60, 279, 1137, 2141, 2218, 2460, 2760, 3196 |
| MunI | CAATTG | 4 cut(s) | 939, 1884, 2889, 3366 |
| Mva1269I | GAATGC | 1 cut(s) | 1741 |
| MvaI | CCWGG | 8 cut(s) | 710, 1701, 2297, 2686, 3047, 3972, 4016, 4173 |
| MvnI | CGCG | 8 cut(s) | 11, 146, 148, 153, 191, 255, 3315, 3431 |
| NaeI | GCCGGC | 1 cut(s) | 280 |
| NarI | GGCGCC | 2 cut(s) | 240, 3903 |
| NciI | CCSGG | 2 cut(s) | 1138, 2141 |
| NcoI | CCATGG | 1 cut(s) | 2210 |
| NdeI | CATATG | 1 cut(s) | 2728 |
| NgoMIV | GCCGGC | 1 cut(s) | 278 |
| NmeAIII | GCCGAG | 1 cut(s) | 3088 |
| NmuCI | GTSAC | 5 cut(s) | 181, 1846, 3049, 3662, 3910 |
| NruI | TCGCGA | 1 cut(s) | 153 |
| NsiI | ATGCAT | 2 cut(s) | 468, 1411 |
| NspI | RCATGY | 1 cut(s) | 831 |
| NspV | TTCGAA | 2 cut(s) | 399, 4286 |
| PaeR7I | CTCGAG | 3 cut(s) | 78, 125, 4046 |
| PagI | TCATGA | 2 cut(s) | 778, 2191 |
| PciI | ACATGT | 1 cut(s) | 827 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 207 |
| PctI | GAATGC | 1 cut(s) | 1741 |
| PdiI | GCCGGC | 1 cut(s) | 280 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1538 |
| PflFI | GACNNNGTC | 2 cut(s) | 89, 272 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 944 |
| PleI | GAGTC | 8 cut(s) | 136, 688, 1765, 1963, 2735, 2928, 3031, 3186 |
| PluTI | GGCGCC | 2 cut(s) | 243, 3906 |
| PmaCI | CACGTG | 1 cut(s) | 1742 |
| PmlI | CACGTG | 1 cut(s) | 1742 |
| PpsI | GAGTC | 8 cut(s) | 136, 688, 1765, 1963, 2735, 2928, 3031, 3186 |
| Ppu21I | YACGTR | 2 cut(s) | 1742, 3622 |
| PpuMI | RGGWCCY | 1 cut(s) | 2201 |
| PscI | ACATGT | 1 cut(s) | 827 |
| PshBI | ATTAAT | 1 cut(s) | 3533 |
| PsiI | TTATAA | 2 cut(s) | 915, 1793 |
| Psp124BI | GAGCTC | 4 cut(s) | 1146, 1440, 1945, 2159 |
| Psp1406I | AACGTT | 1 cut(s) | 1521 |
| Psp5II | RGGWCCY | 1 cut(s) | 2201 |
| Psp6I | CCWGG | 8 cut(s) | 708, 1699, 2295, 2684, 3045, 3970, 4014, 4171 |
| PspCI | CACGTG | 1 cut(s) | 1742 |
| PspEI | GGTNACC | 1 cut(s) | 3740 |
| PspFI | CCCAGC | 1 cut(s) | 800 |
| PspGI | CCWGG | 8 cut(s) | 708, 1699, 2295, 2684, 3045, 3970, 4014, 4171 |
| PspOMI | GGGCCC | 1 cut(s) | 478 |
| PspPPI | RGGWCCY | 1 cut(s) | 2201 |
| PspXI | VCTCGAGB | 1 cut(s) | 125 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3977, 4178 |
| PsuI | RGATCY | 3 cut(s) | 1058, 1926, 2107 |
| PsyI | GACNNNGTC | 2 cut(s) | 89, 272 |
| PvuII | CAGCTG | 1 cut(s) | 1829 |
| RruI | TCGCGA | 1 cut(s) | 153 |
| RseI | CAYNNNNRTG | 4 cut(s) | 321, 1734, 2423, 3281 |
| SacI | GAGCTC | 4 cut(s) | 1146, 1440, 1945, 2159 |
| SacII | CCGCGG | 1 cut(s) | 3432 |
| ScaI | AGTACT | 3 cut(s) | 1218, 2230, 3784 |
| SchI | GAGTC | 8 cut(s) | 137, 689, 1766, 1963, 2735, 2928, 3031, 3187 |
| SduI | GDGCHC | 9 cut(s) | 482, 673, 762, 1146, 1440, 1945, 2123, 2159, 3712 |
| SexAI | ACCWGGT | 2 cut(s) | 1699, 3045 |
| SfcI | CTRYAG | 3 cut(s) | 307, 2028, 2247 |
| SfoI | GGCGCC | 2 cut(s) | 241, 3904 |
| Sfr274I | CTCGAG | 3 cut(s) | 78, 125, 4046 |
| Sfr303I | CCGCGG | 1 cut(s) | 3432 |
| SfuI | TTCGAA | 2 cut(s) | 399, 4286 |
| SgrAI | CRCCGGYG | 1 cut(s) | 278 |
| SgrBI | CCGCGG | 1 cut(s) | 3432 |
| SinI | GGWCC | 4 cut(s) | 1526, 1719, 2201, 3545 |
| SlaI | CTCGAG | 3 cut(s) | 78, 125, 4046 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 321, 1734, 2423, 3281 |
| SmlI | CTYRAG | 6 cut(s) | 78, 125, 549, 1978, 4046, 4241 |
| SmoI | CTYRAG | 6 cut(s) | 78, 125, 549, 1978, 4046, 4241 |
| SnaBI | TACGTA | 1 cut(s) | 3622 |
| SpeI | ACTAGT | 1 cut(s) | 1301 |
| SspDI | GGCGCC | 2 cut(s) | 239, 3902 |
| SspI | AATATT | 3 cut(s) | 2346, 2583, 3637 |
| SspMI | CTAG | 9 cut(s) | 348, 456, 1062, 1095, 1302, 1952, 2411, 2733, 3267 |
| SstI | GAGCTC | 4 cut(s) | 1146, 1440, 1945, 2159 |
| StyI | CCWWGG | 6 cut(s) | 2210, 2718, 3257, 3480, 3658, 3729 |
| TaiI | ACGT | 7 cut(s) | 198, 213, 1226, 1524, 1744, 2355, 3624 |
| TaqII | GACCGA | 1 cut(s) | 131 |
| TatI | WGTACW | 6 cut(s) | 742, 1216, 2180, 2228, 3013, 3782 |
| TauI | GCSGC | 8 cut(s) | 14, 146, 191, 240, 258, 1892, 2334, 2857 |
| TscAI | CASTG | 8 cut(s) | 35, 1075, 2017, 2128, 2190, 2908, 3117, 3330 |
| TseFI | GTSAC | 5 cut(s) | 181, 1846, 3049, 3662, 3910 |
| TseI | GCWGC | 6 cut(s) | 605, 659, 868, 1085, 2144, 4023 |
| Tsp45I | GTSAC | 5 cut(s) | 181, 1846, 3049, 3662, 3910 |
| TspGWI | ACGGA | 4 cut(s) | 2046, 3015, 3082, 4215 |
| TspRI | CASTG | 8 cut(s) | 35, 1075, 2017, 2128, 2190, 2908, 3117, 3330 |
| Tth111I | GACNNNGTC | 2 cut(s) | 89, 272 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 944 |
| Vha464I | CTTAAG | 1 cut(s) | 1978 |
| VneI | GTGCAC | 1 cut(s) | 2119 |
| VpaK11BI | GGWCC | 4 cut(s) | 1526, 1719, 2201, 3545 |
| VspI | ATTAAT | 1 cut(s) | 3533 |
| XbaI | TCTAGA | 1 cut(s) | 1951 |
| XceI | RCATGY | 1 cut(s) | 831 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3505 |
| XhoI | CTCGAG | 3 cut(s) | 78, 125, 4046 |
| XmiI | GTMKAC | 3 cut(s) | 207, 700, 1127 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1538 |
| XspI | CTAG | 9 cut(s) | 348, 456, 1062, 1095, 1302, 1952, 2411, 2733, 3267 |
| ZrmI | AGTACT | 3 cut(s) | 1218, 2230, 3784 |
| Zsp2I | ATGCAT | 2 cut(s) | 468, 1411 |