Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011019

Physical Location & Seq

Genomic Coordinates Forward (+)

62670093 .. 62682333

Gene Structure 12241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG399600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3612 bp

ATGAAACATATAAAGGATTTTACATTTGTACATGGTTACATTGAGCCCGTTCTGGTTATCCTTCATGAGCGGGAGCTTACTTGGGCTGGGCGTGTCTCATGGAAGCACCATACATGTATGATTTCCGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCTCTAATATGGTCAGCTATTAACCTCCCACATGATGCTTATAAGCTACTTGCTGTGCCATCTCCAATTGGTGGTGTTCTTGTGATTAGTGCAAACTCTGTTCATTATCATAGCCAGTCAGCTTCATGTGCATTGGCATTAAATAGTTACGCCGTTTCTGTTGATAGCAGTCAAGAGATGCCAAGATCTAGTTTCACTGTGGAGCTTGATGCTGCCAATGCTAGTTGGTTGTCGAATGATGTTGTCTTGCTGTCTACAAAAACCGGGGAGCTCTTATTGCTCACCCTTGTTTATGATGGAAGGGTCGTACACAGACTTGATATTTCAAAGTCTAAAGCTTCAGTACTTACGTCGGGAATTGCAACAGTTGGAAATTCATTATTTTTTTTGGGCAGTCGGTTGGGAGACAGTTTGCTTGTGCAGTTTACTAGTGGAGTAGGGGCCTCGATGTTGTCAGCTGGTTTGAAGGATGAGGTAGGAGATATTGAAGGTGATGCCCCATCAGCTAAGCGATTGCGAATGTCATCTTCTGATGCATTGCAAGATATGATTAGTGGTGAGGAGCTCTCTTTATATGGGTCAGCTCAAAACAATGCAGAATCAGCTCAGAGGTCTTTCTCATTTGCGGTCAGGGATTCTTTGGTTAACGTTGGTCCTTTGAAGGACTTCTCCTATGGGCTAAGGATAAATGCAGATGCAAATGCTACTGGAATTGCTAAACAGAGCAATTATGAACTGGTGTGTTGTTCGGGTCATGGAAAGAATGGTTCGCTCTGTGTTCTTCGTCAGTCAATTCGTCCAGAAATGATTACTGAGGTTGCACTACCAGGTTGCAAGGGAATTTGGACCGTTTACCATAAGAATGCACGTGGTCATAATGCTGAGTCTTCCGATGACGAGTATCATGCTTTTTTAATTATAAGTCTGGAGGCTCGTACAATGGTACTTGAAACAGCTGATCATCTGAGCGAAGTCACAGATAAAGTTGACTATTTTCTGCAAGGGAGAACAATTGCGGCAGGGAATTTGTTTGGAAGGCGTCGAGTTGTGCAGATCTATGAAAGGGGAGCTCGAATTCTAGAAGGCTATTATATGACTCAGGACTTAAGCTTTGGTGCCTCAAACTCTGAATCTGGCACAGGTTCTGAGAGTGCTACAGTATTATCAGTTTCTATTGTTGATCCGTATGTGTTGCTGAGAATGTCTGATGGTGGTATTCGGCTCCTTGTTGGAGATCCTTCTTTGTGCACTGTTTCTATAAGCATCCCGGCAGCCTTTGAGAGCTCAAAGAAAATAGTATCTGCCTGTACACTGTATCATGATGAAGGACCTGAGCCATGGCTCCGGAAGACAAGTACTGATGCTTGGCTTTCTACAGGCATTGACGAGGCCATTGATGGTGCTGATGGTGTATTACATGACCAGGGTGATGTATATTGTGTCGTTTGTTACGAAAGCGGCTCCCTTGAAATATTTGACGTACCAAATTTTAATTGTGTTTTCTCTGTGGATAAGTTTGTATCTGGAAAGGCACACCTAGTTGACACATTTATGCGAGACCCACTAATTGATTCCCAAAAGATGATTGGCCAAAGCACTGAAGAAGTGAGTGGCCTGAGTAGGAAAGAAAATATACACAATATGAGAGTTGTAGAGCTTACCATGCAAAGATGGTCAGGACAGCATAGTCGTCCATTTCTTTTTGGAATATTGAATGATGGGATGATATTTTGTTACCATGCGTACTTATATGAAAGTCCAGACAATACCAAAACTGAAGATTCAGCTTCATCACAAAATGCTACTGCTTCCAGGCTTAGAAATTTGAGATTCGTTCGTGTTCCCTTGGACACATATGCTAGGAATGACTCATCAAATGGAATTTCCGGTCAAAGAATAACTGTTTTCAACAACATTGCTGGTAATCAGGGTTTGTTCCTTTCTGGTTCAAGACCAGCTTGGTTCATGGTATTCAGAGAGCGGCTTCGTGTTCATCCACAGCTTTGTGATGGTTCAATTGTTGCCTTCACTGTGCTTCACAATGTTAACTGTAATCATGGACTCATATATGTTACATCACAGGGTATTATGAAAATTTGCCAACTGCCATCTATTACAAGCTATGACAATTATTGGCCTGTACAGAAGATTCCGTTGAAAGGGACTCCCCACCAGGTCACTTACTTTGCCGAGAAGAATTTATACCCACTTATAGTTTCCGTACCTGTTCAGAAGCCACTGAATCAAGTTCTATCATCTTTGGTTGATCAAGAATTTGGCCATTCGGTTGAGAATCATAATTTGAGTCCTGAAGAACTACACCGGACTTATACTGTTGATGAATTCGAGGTTCGGATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAGCTAGGGCTACCATTCCAATGCAAACTTCTGAAAATGCTCTGACTGTTCGCGTAGTTACACTGTTTAATACAACAACAAAAGAGAACGAAACACTTTTAGCAATTGGGACAGCTTATGTTCAAGGGGAGGATGTTGCTGGTAGAGGACGGGTTCTTTTATTTTCGGCAGAAAATAATGCTGACAATCCTCAAAACTTGGTTTCAGAGGTTTTCTCCAAGGAATTGAAAGGTGCCATATCTGCATTGGCTTCGCTTCAAGGCCATCTACTAATAGCTTCTGGTCCTAAAATTATTTTACACAAGTGGACTGGTAGTGATCTGACTGGTGTTGCATTTTTTGATGTTCCACCTTTATACGTAGTGAGCTTGAATATTGTCAAGAATTTCATTCTCCTCGGTGACATTCACAAAAGCATTTACTTCCTCAGTTGGAAGGAGCAGGGAGCTCAACTCAGTTTATTGGCCAAGGATTTTGGTAACCTTGATTGTTTTGCAACAGAGTTTTTGATTGATGGAAGTACTCTGAGCCTTGCGGTTGCAGATGAACAAAAGAACATTCAGATTTTTTACTATGCACCAAAGATATCTGAGAGTTGGAAGGGCCAGAAGCTTCTTACAAGGGCTGAATTCCATGTCGGTGCCCATGTGACTAAGTTCTTGCGGTTACAGATGCTTTCTACATTATCTGATCGAACTGGAAAAAATCCAGGCTCTGATAAAACAAATCGCTTTGCTTTGTTATTTGGTACCCTGGATGGCAGCATTGGTTGTATTGCGCCTCTCGAGGAGCTGACATTTCGAAGATTGCAGTCATTACAGAATAAGCTTGTTGACGCTGTTCCCCATGTTGCTGGTTTGAATCCTAGATCATTCCGCCAGTTTCGTTCAAAAGGAAAAGCTCATCGGCCAGGCCCTGATAGCATTGTTGACTGCGAGCTACTATTCCATTATGAGATGCTTCAGTTGGAGGAACAGCTTGAGATTGCTCAACAGATAGGGACAACTCGCCTTCAAATTCTTTCAAACTTGGACGACCTCTCTCTGGGAACGAGCTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CPSF_A MMS1_N

Protein Analysis

1203

Amino Acids

132.43

Weight (kDa)

5.92

Isoelectric Point (pI)

37.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_RSE1_1st	PF10433	4 - 197	1.6e-11	RSE1/DDB1/CPSF1 first beta-propeller
Beta-prop_RSE1_2nd	PF23726	320 - 755	1.2e-56	RSE1/DDB1/CPSF1 second beta-propeller
CPSF_A	PF03178	835 - 1168	7.7e-86	CPSF A subunit region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011019)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51660 AT5G51660 AT5G51660 AT5G51660
fragaria_vesca	FvH4_7g28210 FvH4_7g28210 FvH4_7g28210 FvH4_7g28210
malus_domestica	MD01G1186100.v1.1
prunus_persica	Prupe.2G282700_v2.0.a1
pyrus_communis	pycom01g19770
rosa_chinensis	RchiOBHm_Chr1g0375181
rosa_laevigata	RLG00000026681
rosa_multiflora	Rmu_sc0000554.1_g000025
rosa_roxburghii	Rroxscaffold_4G00282960
rosa_rugosa	Rorug01G0389000 Rorug01G0389000
rosa_samantha	Rh1AG399600 Rh1CG377800
rosa_wichuraiana	Rw1G035470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	201, 1079
AasI	GACNNNNNNGTC	1 cut(s)	1845
Acc65I	GGTACC	1 cut(s)	3296
AccB1I	GGYRCC	4 cut(s)	1274, 2780, 3188, 3296
AccB7I	CCANNNNNTGG	1 cut(s)	230
AccBSI	CCGCTC	2 cut(s)	70, 2140
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	1 cut(s)	2601
AccIII	TCCGGA	1 cut(s)	1503
AciI	CCGC	9 cut(s)	70, 126, 785, 1175, 1617, 2140, 3083, 3211, 3424
AclI	AACGTT	1 cut(s)	807
AclWI	GGATC	2 cut(s)	1334, 1388
AcoI	YGGCCR	4 cut(s)	1747, 2437, 3012, 3455
AcuI	CTGAAG	5 cut(s)	483, 1779, 1956, 2490, 3494
AcvI	CACGTG	1 cut(s)	1028
AcyI	GRCGYC	1 cut(s)	1198
AfiI	CCNNNNNNNGG	3 cut(s)	230, 2318, 3592
AflII	CTTAAG	1 cut(s)	1264
AflIII	ACRYGT	1 cut(s)	113
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	7 cut(s)	985, 1581, 1970, 2331, 3256, 3300, 3457
AjuI	GAANNNNNNNTTGG	2 cut(s)	2560, 2592
Alw21I	GWGCWC	6 cut(s)	432, 726, 1231, 1409, 1445, 2998
Alw26I	GTCTC	3 cut(s)	100, 558, 1710
Alw44I	GTGCAC	1 cut(s)	1405
AlwI	GGATC	2 cut(s)	1334, 1388
AlwNI	CAGNNNCTG	3 cut(s)	1304, 3263, 3464
Ama87I	CYCGRG	1 cut(s)	3332
Aor13HI	TCCGGA	1 cut(s)	1503
ApaLI	GTGCAC	1 cut(s)	1405
ApeKI	GCWGC	4 cut(s)	154, 371, 1430, 3309
ArsI	GACNNNNNNTTYG	2 cut(s)	1253, 1285
Asp700I	GAANNNNTTC	1 cut(s)	824
Asp718I	GGTACC	1 cut(s)	3296
AspLEI	GCGC	1 cut(s)	3328
AspS9I	GGNCC	8 cut(s)	600, 812, 1005, 1487, 2540, 2831, 3151, 3461
AsuC2I	CCSGG	2 cut(s)	424, 1427
AsuHPI	GGTGA	5 cut(s)	433, 662, 728, 1598, 2960
AsuII	TTCGAA	1 cut(s)	3349
AvaI	CYCGRG	1 cut(s)	3332
AvaII	GGWCC	4 cut(s)	812, 1005, 1487, 2831
BaeGI	GKGCMC	2 cut(s)	1409, 3193
BalI	TGGCCA	3 cut(s)	1749, 2439, 3014
BanI	GGYRCC	4 cut(s)	1274, 2780, 3188, 3296
BanII	GRGCYC	6 cut(s)	48, 432, 726, 1231, 1445, 2998
BarI	GAAGNNNNNNTAC	2 cut(s)	2345, 2377
BbrPI	CACGTG	1 cut(s)	1028
BbsI	GAAGAC	2 cut(s)	1038, 1514
Bbv12I	GWGCWC	6 cut(s)	432, 726, 1231, 1409, 1445, 2998
BbvI	GCAGC	4 cut(s)	166, 358, 1442, 3321
BceAI	ACGGC	1 cut(s)	296
BcgI	CGANNNNNNTGC	4 cut(s)	1046, 1080, 2781, 2815
BciT130I	CCWGG	7 cut(s)	987, 1583, 1972, 2333, 3258, 3302, 3459
BclI	TGATCA	2 cut(s)	1117, 2425
BcnI	CCSGG	2 cut(s)	424, 1427
BcoDI	GTCTC	3 cut(s)	100, 558, 1710
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	8 cut(s)	348, 381, 588, 1238, 1697, 2019, 2553, 3414
BfmI	CTRYAG	2 cut(s)	1314, 1533
BfrI	CTTAAG	1 cut(s)	1264
BglII	AGATCT	2 cut(s)	344, 1212
BisI	GCNGC	7 cut(s)	155, 372, 1176, 1431, 1618, 2141, 3310
BlpI	GCTNAGC	1 cut(s)	666
BlsI	GCNGC	7 cut(s)	156, 373, 1177, 1432, 1619, 2142, 3311
BmcAI	AGTACT	3 cut(s)	504, 1516, 3070
Bme1390I	CCNGG	9 cut(s)	424, 987, 1427, 1583, 1972, 2333, 3258, 3302, 3459
Bme18I	GGWCC	4 cut(s)	812, 1005, 1487, 2831
BmeT110I	CYCGRG	1 cut(s)	3332
BmgT120I	GGNCC	8 cut(s)	600, 812, 1005, 1487, 2540, 2831, 3151, 3461
BmiI	GGNNCC	9 cut(s)	601, 1276, 1382, 1502, 1621, 2523, 2782, 3190, 3298
BmrFI	CCNGG	9 cut(s)	424, 987, 1427, 1583, 1972, 2333, 3258, 3302, 3459
BpiI	GAAGAC	2 cut(s)	1038, 1514
BplI	GAGNNNNNCTC	6 cut(s)	710, 742, 2747, 2779, 2985, 3017
BpmI	CTGGAG	1 cut(s)	1106
Bpu10I	CCTNAGC	2 cut(s)	839, 1491
Bpu1102I	GCTNAGC	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	3349
BpuEI	CTTGAG	1 cut(s)	3548
BpuMI	CCSGG	2 cut(s)	424, 1427
BsaAI	YACGTR	2 cut(s)	1028, 2908
BsaHI	GRCGYC	1 cut(s)	1198
BsaI	GGTCTC	1 cut(s)	1710
BsaJI	CCNNGG	9 cut(s)	423, 1496, 1582, 2004, 2543, 2766, 2944, 3015, 3300
BsaWI	WCCGGW	3 cut(s)	1503, 2045, 2481
Bsc4I	CCNNNNNNNGG	3 cut(s)	230, 2318, 3592
Bse1I	ACTGG	7 cut(s)	274, 871, 900, 2863, 2878, 3250, 3427
Bse3DI	GCAATG	2 cut(s)	695, 2073
BseAI	TCCGGA	1 cut(s)	1503
BseBI	CCWGG	7 cut(s)	987, 1583, 1972, 2333, 3258, 3302, 3459
BseDI	CCNNGG	9 cut(s)	423, 1496, 1582, 2004, 2543, 2766, 2944, 3015, 3300
BseGI	GGATG	7 cut(s)	157, 634, 1422, 1887, 2152, 2686, 3310
BseLI	CCNNNNNNNGG	3 cut(s)	230, 2318, 3592
BseMI	GCAATG	2 cut(s)	695, 2073
BseNI	ACTGG	7 cut(s)	274, 871, 900, 2863, 2878, 3250, 3427
BseRI	GAGGAG	3 cut(s)	734, 2933, 3350
BseSI	GKGCMC	2 cut(s)	1409, 3193
BseXI	GCAGC	4 cut(s)	166, 358, 1442, 3321
BseYI	CCCAGC	1 cut(s)	86
BsgI	GTGCAG	2 cut(s)	599, 1229
Bsh1236I	CGCG	1 cut(s)	2601
BshNI	GGYRCC	4 cut(s)	1274, 2780, 3188, 3296
BsiHKAI	GWGCWC	6 cut(s)	432, 726, 1231, 1409, 1445, 2998
BsiHKCI	CYCGRG	1 cut(s)	3332
BsiSI	CCGG	5 cut(s)	423, 1427, 1504, 2046, 2482
BslFI	GGGAC	3 cut(s)	2335, 2671, 3562
BslI	CCNNNNNNNGG	3 cut(s)	230, 2318, 3592
BsmAI	GTCTC	3 cut(s)	100, 558, 1710
BsmFI	GGGAC	3 cut(s)	2335, 2671, 3562
BsmI	GAATGC	1 cut(s)	1027
Bso31I	GGTCTC	1 cut(s)	1710
BsoBI	CYCGRG	1 cut(s)	3332
Bsp119I	TTCGAA	1 cut(s)	3349
Bsp1286I	GDGCHC	8 cut(s)	48, 432, 726, 1231, 1409, 1445, 2998, 3193
Bsp13I	TCCGGA	1 cut(s)	1503
Bsp1407I	TGTACA	3 cut(s)	28, 1466, 2299
Bsp143I	GATC	9 cut(s)	344, 1117, 1212, 1339, 1393, 2425, 2866, 3238, 3416
Bsp1720I	GCTNAGC	1 cut(s)	666
Bsp19I	CCATGG	1 cut(s)	1496
BspACI	CCGC	9 cut(s)	70, 126, 785, 1175, 1617, 2140, 3083, 3211, 3424
BspEI	TCCGGA	1 cut(s)	1503
BspFNI	CGCG	1 cut(s)	2601
BspHI	TCATGA	2 cut(s)	64, 1477
BspLI	GGNNCC	9 cut(s)	601, 1276, 1382, 1502, 1621, 2523, 2782, 3190, 3298
BspPI	GGATC	2 cut(s)	1334, 1388
BspT104I	TTCGAA	1 cut(s)	3349
BspT107I	GGYRCC	4 cut(s)	1274, 2780, 3188, 3296
BspTI	CTTAAG	1 cut(s)	1264
BspTNI	GGTCTC	1 cut(s)	1710
BsrBI	CCGCTC	2 cut(s)	70, 2140
BsrDI	GCAATG	2 cut(s)	695, 2073
BsrGI	TGTACA	3 cut(s)	28, 1466, 2299
BsrI	ACTGG	7 cut(s)	274, 871, 900, 2863, 2878, 3250, 3427
BssECI	CCNNGG	9 cut(s)	423, 1496, 1582, 2004, 2543, 2766, 2944, 3015, 3300
BssMI	GATC	9 cut(s)	344, 1117, 1212, 1339, 1393, 2425, 2866, 3238, 3416
BssNI	GRCGYC	1 cut(s)	1198
BssT1I	CCWWGG	5 cut(s)	1496, 2004, 2543, 2766, 3015
Bst2UI	CCWGG	7 cut(s)	987, 1583, 1972, 2333, 3258, 3302, 3459
BstACI	GRCGYC	1 cut(s)	1198
BstAFI	CTTAAG	1 cut(s)	1264
BstAUI	TGTACA	3 cut(s)	28, 1466, 2299
BstBAI	YACGTR	2 cut(s)	1028, 2908
BstBI	TTCGAA	1 cut(s)	3349
BstC8I	GCNNGC	2 cut(s)	2550, 3485
BstDSI	CCRYGG	1 cut(s)	1496
BstEII	GGTNACC	1 cut(s)	3026
BstF5I	GGATG	7 cut(s)	157, 634, 1422, 1887, 2152, 2686, 3310
BstFNI	CGCG	1 cut(s)	2601
BstHHI	GCGC	1 cut(s)	3328
BstKTI	GATC	9 cut(s)	347, 1120, 1215, 1342, 1396, 2428, 2869, 3241, 3419
BstMAI	GTCTC	3 cut(s)	100, 558, 1710
BstMBI	GATC	9 cut(s)	344, 1117, 1212, 1339, 1393, 2425, 2866, 3238, 3416
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 377, 436, 662, 761, 1822, 2789, 3468
BstNI	CCWGG	7 cut(s)	987, 1583, 1972, 2333, 3258, 3302, 3459
BstNSI	RCATGY	1 cut(s)	117
BstPI	GGTNACC	1 cut(s)	3026
BstSCI	CCNGG	9 cut(s)	422, 985, 1425, 1581, 1970, 2331, 3256, 3300, 3457
BstSFI	CTRYAG	2 cut(s)	1314, 1533
BstSLI	GKGCMC	2 cut(s)	1409, 3193
BstSNI	TACGTA	1 cut(s)	2908
BstUI	CGCG	1 cut(s)	2601
BstV1I	GCAGC	4 cut(s)	166, 358, 1442, 3321
BstV2I	GAAGAC	2 cut(s)	1038, 1514
BstX2I	RGATCY	3 cut(s)	344, 1212, 1393
BstXI	CCANNNNNNTGG	1 cut(s)	3401
BstYI	RGATCY	3 cut(s)	344, 1212, 1393
BtgI	CCRYGG	1 cut(s)	1496
BtsCI	GGATG	7 cut(s)	157, 634, 1422, 1887, 2152, 2686, 3310
BtsIMutI	CAGTG	7 cut(s)	354, 1407, 1469, 1755, 2187, 2396, 2609
Cac8I	GCNNGC	2 cut(s)	2550, 3485
CaiI	CAGNNNCTG	3 cut(s)	1304, 3263, 3464
CciI	TCATGA	2 cut(s)	64, 1477
CfoI	GCGC	1 cut(s)	3328
Cfr13I	GGNCC	8 cut(s)	600, 812, 1005, 1487, 2540, 2831, 3151, 3461
CseI	GACGC	2 cut(s)	1187, 3392
CsiI	ACCWGGT	2 cut(s)	985, 2331
DpnI	GATC	9 cut(s)	346, 1119, 1214, 1341, 1395, 2427, 2868, 3240, 3418
DpnII	GATC	9 cut(s)	344, 1117, 1212, 1339, 1393, 2425, 2866, 3238, 3416
DrdI	GACNNNNNNGTC	1 cut(s)	1845
DseDI	GACNNNNNNGTC	1 cut(s)	1845
EaeI	YGGCCR	4 cut(s)	1747, 2437, 3012, 3455
EciI	GGCGGA	1 cut(s)	3413
Ecl136II	GAGCTC	5 cut(s)	430, 724, 1229, 1443, 2996
Eco105I	TACGTA	1 cut(s)	2908
Eco130I	CCWWGG	5 cut(s)	1496, 2004, 2543, 2766, 3015
Eco24I	GRGCYC	6 cut(s)	48, 432, 726, 1231, 1445, 2998
Eco31I	GGTCTC	1 cut(s)	1710
Eco32I	GATATC	1 cut(s)	3135
Eco47I	GGWCC	4 cut(s)	812, 1005, 1487, 2831
Eco53kI	GAGCTC	5 cut(s)	430, 724, 1229, 1443, 2996
Eco57I	CTGAAG	5 cut(s)	483, 1779, 1956, 2490, 3494
Eco72I	CACGTG	1 cut(s)	1028
Eco88I	CYCGRG	1 cut(s)	3332
Eco91I	GGTNACC	1 cut(s)	3026
EcoICRI	GAGCTC	5 cut(s)	430, 724, 1229, 1443, 2996
EcoO109I	RGGNCCY	3 cut(s)	600, 1487, 3461
EcoO65I	GGTNACC	1 cut(s)	3026
EcoRI	GAATTC	3 cut(s)	1233, 2501, 3176
EcoRII	CCWGG	7 cut(s)	985, 1581, 1970, 2331, 3256, 3300, 3457
EcoRV	GATATC	1 cut(s)	3135
EcoT14I	CCWWGG	5 cut(s)	1496, 2004, 2543, 2766, 3015
EcoT22I	ATGCAT	1 cut(s)	697
EcoT38I	GRGCYC	6 cut(s)	48, 432, 726, 1231, 1445, 2998
ErhI	CCWWGG	5 cut(s)	1496, 2004, 2543, 2766, 3015
FalI	AAGNNNNNCTT	2 cut(s)	2101, 2133
FaqI	GGGAC	3 cut(s)	2335, 2671, 3562
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	2014
FbaI	TGATCA	2 cut(s)	1117, 2425
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	7 cut(s)	155, 372, 1176, 1431, 1618, 2141, 3310
FokI	GGATG	7 cut(s)	144, 641, 1409, 1894, 2139, 2693, 3317
FriOI	GRGCYC	6 cut(s)	48, 432, 726, 1231, 1445, 2998
Fsp4HI	GCNGC	7 cut(s)	155, 372, 1176, 1431, 1618, 2141, 3310
FspBI	CTAG	8 cut(s)	348, 381, 588, 1238, 1697, 2019, 2553, 3414
GlaI	GCGC	1 cut(s)	3327
GluI	GCNGC	7 cut(s)	155, 372, 1176, 1431, 1618, 2141, 3310
GsaI	CCCAGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	1106
HapII	CCGG	5 cut(s)	423, 1427, 1504, 2046, 2482
HgaI	GACGC	2 cut(s)	1187, 3392
HhaI	GCGC	1 cut(s)	3328
Hin1I	GRCGYC	1 cut(s)	1198
Hin6I	GCGC	1 cut(s)	3326
HinP1I	GCGC	1 cut(s)	3326
HincII	GTYRAC	6 cut(s)	805, 1147, 1702, 2206, 3382, 3478
HindII	GTYRAC	6 cut(s)	805, 1147, 1702, 2206, 3382, 3478
HindIII	AAGCTT	4 cut(s)	495, 1267, 3158, 3374
HpaI	GTTAAC	2 cut(s)	805, 2206
HpaII	CCGG	5 cut(s)	423, 1427, 1504, 2046, 2482
HphI	GGTGA	5 cut(s)	433, 662, 728, 1598, 2960
Hpy99I	CGWCG	2 cut(s)	514, 1203
HpyCH4IV	ACGT	5 cut(s)	509, 807, 1027, 1638, 2907
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 377, 436, 662, 761, 1822, 2789, 3468
HpySE526I	ACGT	5 cut(s)	509, 807, 1027, 1638, 2907
Hsp92I	GRCGYC	1 cut(s)	1198
HspAI	GCGC	1 cut(s)	3326
Kpn2I	TCCGGA	1 cut(s)	1503
KpnI	GGTACC	1 cut(s)	3300
Ksp22I	TGATCA	2 cut(s)	1117, 2425
KspAI	GTTAAC	2 cut(s)	805, 2206
Kzo9I	GATC	9 cut(s)	344, 1117, 1212, 1339, 1393, 2425, 2866, 3238, 3416
Lsp1109I	GCAGC	4 cut(s)	166, 358, 1442, 3321
MabI	ACCWGGT	2 cut(s)	985, 2331
MaeI	CTAG	8 cut(s)	348, 381, 588, 1238, 1697, 2019, 2553, 3414
MaeII	ACGT	5 cut(s)	509, 807, 1027, 1638, 2907
MalI	GATC	9 cut(s)	346, 1119, 1214, 1341, 1395, 2427, 2868, 3240, 3418
MbiI	CCGCTC	2 cut(s)	70, 2140
MboI	GATC	9 cut(s)	344, 1117, 1212, 1339, 1393, 2425, 2866, 3238, 3416
MfeI	CAATTG	4 cut(s)	225, 1170, 2175, 2652
MflI	RGATCY	3 cut(s)	344, 1212, 1393
MhlI	GDGCHC	8 cut(s)	48, 432, 726, 1231, 1409, 1445, 2998, 3193
MlsI	TGGCCA	3 cut(s)	1749, 2439, 3014
MluNI	TGGCCA	3 cut(s)	1749, 2439, 3014
MlyI	GAGTC	6 cut(s)	1052, 1249, 2021, 2214, 2317, 2473
MmeI	TCCRAC	5 cut(s)	508, 1369, 2960, 3125, 3495
Mox20I	TGGCCA	3 cut(s)	1749, 2439, 3014
Mph1103I	ATGCAT	1 cut(s)	697
MroI	TCCGGA	1 cut(s)	1503
MroXI	GAANNNNTTC	1 cut(s)	824
MscI	TGGCCA	3 cut(s)	1749, 2439, 3014
MseI	TTAA	8 cut(s)	180, 299, 804, 1073, 1265, 1650, 2205, 2616
MslI	CAYNNNNRTG	4 cut(s)	1020, 1709, 2567, 3186
Msp20I	TGGCCA	3 cut(s)	1749, 2439, 3014
MspA1I	CMGCKG	2 cut(s)	617, 1115
MspCI	CTTAAG	1 cut(s)	1264
MspI	CCGG	5 cut(s)	423, 1427, 1504, 2046, 2482
MspR9I	CCNGG	9 cut(s)	424, 987, 1427, 1583, 1972, 2333, 3258, 3302, 3459
MunI	CAATTG	4 cut(s)	225, 1170, 2175, 2652
Mva1269I	GAATGC	1 cut(s)	1027
MvaI	CCWGG	7 cut(s)	987, 1583, 1972, 2333, 3258, 3302, 3459
MvnI	CGCG	1 cut(s)	2601
MwoI	GCNNNNNNNGC	8 cut(s)	287, 377, 436, 662, 761, 1822, 2789, 3468
NciI	CCSGG	2 cut(s)	424, 1427
NcoI	CCATGG	1 cut(s)	1496
NdeI	CATATG	1 cut(s)	2014
NdeII	GATC	9 cut(s)	344, 1117, 1212, 1339, 1393, 2425, 2866, 3238, 3416
NlaIV	GGNNCC	9 cut(s)	601, 1276, 1382, 1502, 1621, 2523, 2782, 3190, 3298
NmeAIII	GCCGAG	1 cut(s)	2374
NmuCI	GTSAC	4 cut(s)	1132, 2335, 2948, 3196
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	1 cut(s)	117
NspV	TTCGAA	1 cut(s)	3349
PaeR7I	CTCGAG	1 cut(s)	3332
PagI	TCATGA	2 cut(s)	64, 1477
PciI	ACATGT	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	1608
PctI	GAATGC	1 cut(s)	1027
PdmI	GAANNNNTTC	1 cut(s)	824
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	7 cut(s)	156, 373, 1177, 1432, 1619, 2142, 3311
PleI	GAGTC	6 cut(s)	1051, 1249, 2021, 2214, 2317, 2472
PmaCI	CACGTG	1 cut(s)	1028
PmlI	CACGTG	1 cut(s)	1028
PpsI	GAGTC	6 cut(s)	1051, 1249, 2021, 2214, 2317, 2472
Ppu21I	YACGTR	2 cut(s)	1028, 2908
PpuMI	RGGWCCY	1 cut(s)	1487
PscI	ACATGT	1 cut(s)	113
PsiI	TTATAA	2 cut(s)	201, 1079
Psp124BI	GAGCTC	5 cut(s)	432, 726, 1231, 1445, 2998
Psp1406I	AACGTT	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	1487
Psp6I	CCWGG	7 cut(s)	985, 1581, 1970, 2331, 3256, 3300, 3457
PspCI	CACGTG	1 cut(s)	1028
PspEI	GGTNACC	1 cut(s)	3026
PspFI	CCCAGC	1 cut(s)	86
PspGI	CCWGG	7 cut(s)	985, 1581, 1970, 2331, 3256, 3300, 3457
PspN4I	GGNNCC	9 cut(s)	601, 1276, 1382, 1502, 1621, 2523, 2782, 3190, 3298
PspPI	GGNCC	8 cut(s)	600, 812, 1005, 1487, 2540, 2831, 3151, 3461
PspPPI	RGGWCCY	1 cut(s)	1487
PstNI	CAGNNNCTG	3 cut(s)	1304, 3263, 3464
PsuI	RGATCY	3 cut(s)	344, 1212, 1393
PvuII	CAGCTG	2 cut(s)	617, 1115
RseI	CAYNNNNRTG	4 cut(s)	1020, 1709, 2567, 3186
SacI	GAGCTC	5 cut(s)	432, 726, 1231, 1445, 2998
SaqAI	TTAA	8 cut(s)	180, 299, 804, 1073, 1265, 1650, 2205, 2616
SatI	GCNGC	7 cut(s)	155, 372, 1176, 1431, 1618, 2141, 3310
Sau3AI	GATC	9 cut(s)	344, 1117, 1212, 1339, 1393, 2425, 2866, 3238, 3416
Sau96I	GGNCC	8 cut(s)	600, 812, 1005, 1487, 2540, 2831, 3151, 3461
ScaI	AGTACT	3 cut(s)	504, 1516, 3070
SchI	GAGTC	6 cut(s)	1052, 1249, 2021, 2214, 2317, 2473
ScrFI	CCNGG	9 cut(s)	424, 987, 1427, 1583, 1972, 2333, 3258, 3302, 3459
SduI	GDGCHC	8 cut(s)	48, 432, 726, 1231, 1409, 1445, 2998, 3193
SexAI	ACCWGGT	2 cut(s)	985, 2331
SfcI	CTRYAG	2 cut(s)	1314, 1533
Sfr274I	CTCGAG	1 cut(s)	3332
SfuI	TTCGAA	1 cut(s)	3349
SinI	GGWCC	4 cut(s)	812, 1005, 1487, 2831
SlaI	CTCGAG	1 cut(s)	3332
SmiMI	CAYNNNNRTG	4 cut(s)	1020, 1709, 2567, 3186
SmlI	CTYRAG	3 cut(s)	1264, 3332, 3527
SmoI	CTYRAG	3 cut(s)	1264, 3332, 3527
SnaBI	TACGTA	1 cut(s)	2908
SpeI	ACTAGT	1 cut(s)	587
SsiI	CCGC	9 cut(s)	70, 126, 785, 1175, 1617, 2140, 3083, 3211, 3424
SspI	AATATT	3 cut(s)	1632, 1869, 2923
SspMI	CTAG	8 cut(s)	348, 381, 588, 1238, 1697, 2019, 2553, 3414
SstI	GAGCTC	5 cut(s)	432, 726, 1231, 1445, 2998
StyD4I	CCNGG	9 cut(s)	422, 985, 1425, 1581, 1970, 2331, 3256, 3300, 3457
StyI	CCWWGG	5 cut(s)	1496, 2004, 2543, 2766, 3015
TaiI	ACGT	5 cut(s)	512, 810, 1030, 1641, 2910
TaqI	TCGA	8 cut(s)	392, 605, 1201, 1231, 2505, 3241, 3333, 3349
TatI	WGTACW	6 cut(s)	28, 502, 1466, 1514, 2299, 3068
TauI	GCSGC	3 cut(s)	1178, 1620, 2143
Tru1I	TTAA	8 cut(s)	180, 299, 804, 1073, 1265, 1650, 2205, 2616
Tru9I	TTAA	8 cut(s)	180, 299, 804, 1073, 1265, 1650, 2205, 2616
TscAI	CASTG	7 cut(s)	361, 1414, 1476, 1762, 2194, 2403, 2616
TseFI	GTSAC	4 cut(s)	1132, 2335, 2948, 3196
TseI	GCWGC	4 cut(s)	154, 371, 1430, 3309
Tsp45I	GTSAC	4 cut(s)	1132, 2335, 2948, 3196
TspGWI	ACGGA	3 cut(s)	1332, 2301, 2368
TspRI	CASTG	7 cut(s)	361, 1414, 1476, 1762, 2194, 2403, 2616
Van91I	CCANNNNNTGG	1 cut(s)	230
Vha464I	CTTAAG	1 cut(s)	1264
VneI	GTGCAC	1 cut(s)	1405
VpaK11BI	GGWCC	4 cut(s)	812, 1005, 1487, 2831
XbaI	TCTAGA	1 cut(s)	1237
XceI	RCATGY	1 cut(s)	117
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1742, 2791
XhoI	CTCGAG	1 cut(s)	3332
XmiI	GTMKAC	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	824
XspI	CTAG	8 cut(s)	348, 381, 588, 1238, 1697, 2019, 2553, 3414
ZrmI	AGTACT	3 cut(s)	504, 1516, 3070
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.