Domain of unknown function (DUF3475)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G51670 AT5G51670 |
| fragaria_vesca | FvH4_7g28220 |
| malus_domestica | MD01G1186200.v1.1 MD07G1258400.v1.1 |
| prunus_persica | Prupe.2G282900_v2.0.a1 |
| pyrus_communis | pycom01g19780 |
| rosa_chinensis | RchiOBHm_Chr1g0375201 |
| rosa_laevigata | RLG00000026680 |
| rosa_multiflora | Rmu_sc0000554.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00282950 |
| rosa_rugosa | Rorug01G0389000 |
| rosa_samantha | Rh1AG399700 Rh1BG364800 Rh1CG377700 Rh1DG395400 |
| rosa_wichuraiana | Rw1G035480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 487 |
| AatII | GACGTC | 2 cut(s) | 944, 995 |
| Acc16I | TGCGCA | 1 cut(s) | 1246 |
| Acc36I | ACCTGC | 1 cut(s) | 1467 |
| AccB1I | GGYRCC | 2 cut(s) | 1309, 1372 |
| AccBSI | CCGCTC | 2 cut(s) | 366, 524 |
| AccI | GTMKAC | 1 cut(s) | 1161 |
| AccII | CGCG | 4 cut(s) | 536, 584, 1166, 1218 |
| AciI | CCGC | 7 cut(s) | 202, 307, 364, 376, 522, 582, 1085 |
| AclI | AACGTT | 1 cut(s) | 812 |
| AclWI | GGATC | 6 cut(s) | 193, 404, 888, 1247, 1288, 1301 |
| AcoI | YGGCCR | 1 cut(s) | 403 |
| AcsI | RAATTY | 2 cut(s) | 925, 1139 |
| AcuI | CTGAAG | 3 cut(s) | 611, 632, 1076 |
| AcyI | GRCGYC | 4 cut(s) | 941, 992, 1158, 1310 |
| AfaI | GTAC | 7 cut(s) | 63, 416, 557, 566, 601, 935, 955 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 25, 175, 349, 1150, 1290 |
| AgeI | ACCGGT | 1 cut(s) | 100 |
| AgsI | TTSAA | 4 cut(s) | 530, 691, 1465, 1514 |
| AjiI | CACGTC | 1 cut(s) | 489 |
| Alw21I | GWGCWC | 3 cut(s) | 294, 429, 519 |
| Alw26I | GTCTC | 4 cut(s) | 5, 253, 464, 500 |
| AlwI | GGATC | 6 cut(s) | 193, 404, 888, 1247, 1288, 1301 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 181 |
| Ama87I | CYCGRG | 1 cut(s) | 386 |
| AoxI | GGCC | 5 cut(s) | 129, 145, 403, 883, 1281 |
| ApeKI | GCWGC | 5 cut(s) | 1082, 1189, 1197, 1436, 1450 |
| ApoI | RAATTY | 2 cut(s) | 925, 1139 |
| AseI | ATTAAT | 1 cut(s) | 1530 |
| AsiGI | ACCGGT | 1 cut(s) | 100 |
| AspA2I | CCTAGG | 1 cut(s) | 1297 |
| AspLEI | GCGC | 9 cut(s) | 536, 538, 586, 1082, 1090, 1220, 1247, 1312, 1321 |
| AspS9I | GGNCC | 2 cut(s) | 66, 884 |
| AsuC2I | CCSGG | 1 cut(s) | 1222 |
| AsuHPI | GGTGA | 5 cut(s) | 40, 77, 511, 691, 748 |
| AsuNHI | GCTAGC | 1 cut(s) | 1261 |
| AvaI | CYCGRG | 1 cut(s) | 386 |
| AvaII | GGWCC | 1 cut(s) | 66 |
| AvrII | CCTAGG | 1 cut(s) | 1297 |
| BamHI | GGATCC | 1 cut(s) | 1293 |
| BanI | GGYRCC | 2 cut(s) | 1309, 1372 |
| BanII | GRGCYC | 2 cut(s) | 294, 519 |
| BbsI | GAAGAC | 3 cut(s) | 38, 1026, 1200 |
| Bbv12I | GWGCWC | 3 cut(s) | 294, 429, 519 |
| BbvI | GCAGC | 5 cut(s) | 1094, 1176, 1209, 1423, 1437 |
| BccI | CCATC | 7 cut(s) | 227, 436, 502, 814, 855, 1072, 1117 |
| BceAI | ACGGC | 2 cut(s) | 1297, 1512 |
| BclI | TGATCA | 2 cut(s) | 1113, 1134 |
| BcnI | CCSGG | 1 cut(s) | 1222 |
| BcoDI | GTCTC | 4 cut(s) | 5, 253, 464, 500 |
| BfaI | CTAG | 5 cut(s) | 768, 1262, 1298, 1557, 1561 |
| BfoI | RGCGCY | 2 cut(s) | 1091, 1313 |
| BfuAI | ACCTGC | 1 cut(s) | 1467 |
| BisI | GCNGC | 6 cut(s) | 1083, 1086, 1190, 1198, 1437, 1451 |
| BlnI | CCTAGG | 1 cut(s) | 1297 |
| BlpI | GCTNAGC | 1 cut(s) | 288 |
| BlsI | GCNGC | 6 cut(s) | 1084, 1087, 1191, 1199, 1438, 1452 |
| BmcAI | AGTACT | 2 cut(s) | 601, 955 |
| Bme1390I | CCNGG | 1 cut(s) | 1222 |
| Bme18I | GGWCC | 1 cut(s) | 66 |
| BmeT110I | CYCGRG | 1 cut(s) | 386 |
| BmgBI | CACGTC | 1 cut(s) | 489 |
| BmgT120I | GGNCC | 2 cut(s) | 66, 884 |
| BmiI | GGNNCC | 5 cut(s) | 710, 824, 1295, 1311, 1374 |
| BmrFI | CCNGG | 1 cut(s) | 1222 |
| BmsI | GCATC | 2 cut(s) | 798, 1380 |
| BmtI | GCTAGC | 1 cut(s) | 1265 |
| BpiI | GAAGAC | 3 cut(s) | 38, 1026, 1200 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 206, 238, 1028, 1060 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1500 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 288 |
| BpuEI | CTTGAG | 2 cut(s) | 8, 29 |
| BpuMI | CCSGG | 1 cut(s) | 1222 |
| BsaHI | GRCGYC | 4 cut(s) | 941, 992, 1158, 1310 |
| BsaJI | CCNNGG | 4 cut(s) | 818, 1284, 1297, 1431 |
| BsaWI | WCCGGW | 2 cut(s) | 100, 1255 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 311, 341, 350, 380 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 25, 175, 349, 1150, 1290 |
| Bse118I | RCCGGY | 2 cut(s) | 100, 143 |
| Bse1I | ACTGG | 1 cut(s) | 492 |
| BseDI | CCNNGG | 4 cut(s) | 818, 1284, 1297, 1431 |
| BseGI | GGATG | 2 cut(s) | 162, 847 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 25, 175, 349, 1150, 1290 |
| BseMII | CTCAG | 3 cut(s) | 279, 349, 1437 |
| BseNI | ACTGG | 1 cut(s) | 492 |
| BsePI | GCGCGC | 1 cut(s) | 534 |
| BseRI | GAGGAG | 3 cut(s) | 260, 302, 1363 |
| BseXI | GCAGC | 5 cut(s) | 1094, 1176, 1209, 1423, 1437 |
| BseYI | CCCAGC | 2 cut(s) | 538, 1025 |
| Bsh1236I | CGCG | 4 cut(s) | 536, 584, 1166, 1218 |
| Bsh1285I | CGRYCG | 1 cut(s) | 376 |
| BshFI | GGCC | 5 cut(s) | 131, 147, 405, 885, 1283 |
| BshNI | GGYRCC | 2 cut(s) | 1309, 1372 |
| BshTI | ACCGGT | 1 cut(s) | 100 |
| BsiEI | CGRYCG | 1 cut(s) | 376 |
| BsiHKAI | GWGCWC | 3 cut(s) | 294, 429, 519 |
| BsiHKCI | CYCGRG | 1 cut(s) | 386 |
| BsiSI | CCGG | 5 cut(s) | 101, 144, 402, 1222, 1256 |
| BsiWI | CGTACG | 1 cut(s) | 61 |
| BslFI | GGGAC | 2 cut(s) | 583, 1184 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 25, 175, 349, 1150, 1290 |
| BsmAI | GTCTC | 4 cut(s) | 5, 253, 464, 500 |
| BsmBI | CGTCTC | 2 cut(s) | 253, 464 |
| BsmFI | GGGAC | 2 cut(s) | 583, 1184 |
| BsmI | GAATGC | 1 cut(s) | 1520 |
| BsnI | GGCC | 5 cut(s) | 131, 147, 405, 885, 1283 |
| BsoBI | CYCGRG | 1 cut(s) | 386 |
| Bsp1286I | GDGCHC | 3 cut(s) | 294, 429, 519 |
| Bsp1407I | TGTACA | 1 cut(s) | 933 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 288 |
| BspACI | CCGC | 7 cut(s) | 202, 307, 364, 376, 522, 582, 1085 |
| BspANI | GGCC | 5 cut(s) | 131, 147, 405, 885, 1283 |
| BspCNI | CTCAG | 3 cut(s) | 280, 348, 1438 |
| BspFNI | CGCG | 4 cut(s) | 536, 584, 1166, 1218 |
| BspLI | GGNNCC | 5 cut(s) | 710, 824, 1295, 1311, 1374 |
| BspMI | ACCTGC | 1 cut(s) | 1467 |
| BspOI | GCTAGC | 1 cut(s) | 1265 |
| BspPI | GGATC | 6 cut(s) | 193, 404, 888, 1247, 1288, 1301 |
| BspT107I | GGYRCC | 2 cut(s) | 1309, 1372 |
| BsrBI | CCGCTC | 2 cut(s) | 366, 524 |
| BsrFI | RCCGGY | 2 cut(s) | 100, 143 |
| BsrGI | TGTACA | 1 cut(s) | 933 |
| BsrI | ACTGG | 1 cut(s) | 492 |
| BssAI | RCCGGY | 2 cut(s) | 100, 143 |
| BssECI | CCNNGG | 4 cut(s) | 818, 1284, 1297, 1431 |
| BssHII | GCGCGC | 1 cut(s) | 534 |
| BssNI | GRCGYC | 4 cut(s) | 941, 992, 1158, 1310 |
| BssT1I | CCWWGG | 2 cut(s) | 1284, 1297 |
| Bst4CI | ACNGT | 7 cut(s) | 50, 61, 183, 727, 760, 844, 1013 |
| BstACI | GRCGYC | 4 cut(s) | 941, 992, 1158, 1310 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 345 |
| BstAUI | TGTACA | 1 cut(s) | 933 |
| BstC8I | GCNNGC | 7 cut(s) | 145, 177, 536, 868, 1263, 1267, 1538 |
| BstDEI | CTNAG | 4 cut(s) | 288, 335, 1446, 1500 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 23, 173, 1288 |
| BstF5I | GGATG | 2 cut(s) | 162, 847 |
| BstFNI | CGCG | 4 cut(s) | 536, 584, 1166, 1218 |
| BstH2I | RGCGCY | 2 cut(s) | 1091, 1313 |
| BstHHI | GCGC | 9 cut(s) | 536, 538, 586, 1082, 1090, 1220, 1247, 1312, 1321 |
| BstMAI | GTCTC | 4 cut(s) | 5, 253, 464, 500 |
| BstMCI | CGRYCG | 1 cut(s) | 376 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 345, 540, 1057, 1077, 1316, 1318, 1350, 1546 |
| BstSCI | CCNGG | 1 cut(s) | 1220 |
| BstUI | CGCG | 4 cut(s) | 536, 584, 1166, 1218 |
| BstV1I | GCAGC | 5 cut(s) | 1094, 1176, 1209, 1423, 1437 |
| BstV2I | GAAGAC | 3 cut(s) | 38, 1026, 1200 |
| BstX2I | RGATCY | 2 cut(s) | 893, 1293 |
| BstYI | RGATCY | 2 cut(s) | 893, 1293 |
| BsuRI | GGCC | 5 cut(s) | 131, 147, 405, 885, 1283 |
| BtrI | CACGTC | 1 cut(s) | 489 |
| BtsCI | GGATG | 2 cut(s) | 162, 847 |
| BtsIMutI | CAGTG | 1 cut(s) | 179 |
| BveI | ACCTGC | 1 cut(s) | 1467 |
| Cac8I | GCNNGC | 7 cut(s) | 145, 177, 536, 868, 1263, 1267, 1538 |
| CaiI | CAGNNNCTG | 1 cut(s) | 181 |
| CfoI | GCGC | 9 cut(s) | 536, 538, 586, 1082, 1090, 1220, 1247, 1312, 1321 |
| Cfr10I | RCCGGY | 2 cut(s) | 100, 143 |
| Cfr13I | GGNCC | 2 cut(s) | 66, 884 |
| CseI | GACGC | 4 cut(s) | 269, 1031, 1147, 1172 |
| Csp6I | GTAC | 7 cut(s) | 62, 415, 556, 565, 600, 934, 954 |
| CspAI | ACCGGT | 1 cut(s) | 100 |
| CviAII | CATG | 2 cut(s) | 151, 196 |
| CviQI | GTAC | 7 cut(s) | 62, 415, 556, 565, 600, 934, 954 |
| DdeI | CTNAG | 4 cut(s) | 288, 335, 1446, 1500 |
| DinI | GGCGCC | 1 cut(s) | 1311 |
| DraI | TTTAAA | 1 cut(s) | 436 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 487 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 487 |
| EaeI | YGGCCR | 1 cut(s) | 403 |
| EciI | GGCGGA | 2 cut(s) | 191, 296 |
| Ecl136II | GAGCTC | 2 cut(s) | 292, 517 |
| Eco130I | CCWWGG | 2 cut(s) | 1284, 1297 |
| Eco147I | AGGCCT | 1 cut(s) | 1283 |
| Eco24I | GRGCYC | 2 cut(s) | 294, 519 |
| Eco47I | GGWCC | 1 cut(s) | 66 |
| Eco53kI | GAGCTC | 2 cut(s) | 292, 517 |
| Eco57I | CTGAAG | 3 cut(s) | 611, 632, 1076 |
| Eco88I | CYCGRG | 1 cut(s) | 386 |
| EcoICRI | GAGCTC | 2 cut(s) | 292, 517 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 23, 173, 1288 |
| EcoT14I | CCWWGG | 2 cut(s) | 1284, 1297 |
| EcoT38I | GRGCYC | 2 cut(s) | 294, 519 |
| EgeI | GGCGCC | 1 cut(s) | 1311 |
| EheI | GGCGCC | 1 cut(s) | 1311 |
| ErhI | CCWWGG | 2 cut(s) | 1284, 1297 |
| Esp3I | CGTCTC | 2 cut(s) | 253, 464 |
| FaeI | CATG | 2 cut(s) | 154, 199 |
| FaqI | GGGAC | 2 cut(s) | 583, 1184 |
| FatI | CATG | 2 cut(s) | 150, 195 |
| FbaI | TGATCA | 2 cut(s) | 1113, 1134 |
| FblI | GTMKAC | 1 cut(s) | 1161 |
| Fnu4HI | GCNGC | 6 cut(s) | 1083, 1086, 1190, 1198, 1437, 1451 |
| FokI | GGATG | 2 cut(s) | 149, 834 |
| FriOI | GRGCYC | 2 cut(s) | 294, 519 |
| Fsp4HI | GCNGC | 6 cut(s) | 1083, 1086, 1190, 1198, 1437, 1451 |
| FspBI | CTAG | 5 cut(s) | 768, 1262, 1298, 1557, 1561 |
| FspI | TGCGCA | 1 cut(s) | 1246 |
| GlaI | GCGC | 9 cut(s) | 535, 537, 585, 1081, 1089, 1219, 1246, 1311, 1320 |
| GluI | GCNGC | 6 cut(s) | 1083, 1086, 1190, 1198, 1437, 1451 |
| GsaI | CCCAGC | 2 cut(s) | 542, 1029 |
| HaeII | RGCGCY | 2 cut(s) | 1091, 1313 |
| HaeIII | GGCC | 5 cut(s) | 131, 147, 405, 885, 1283 |
| HapII | CCGG | 5 cut(s) | 101, 144, 402, 1222, 1256 |
| HgaI | GACGC | 4 cut(s) | 269, 1031, 1147, 1172 |
| HhaI | GCGC | 9 cut(s) | 536, 538, 586, 1082, 1090, 1220, 1247, 1312, 1321 |
| Hin1I | GRCGYC | 4 cut(s) | 941, 992, 1158, 1310 |
| Hin1II | CATG | 2 cut(s) | 154, 199 |
| Hin6I | GCGC | 9 cut(s) | 534, 536, 584, 1080, 1088, 1218, 1245, 1310, 1319 |
| HinP1I | GCGC | 9 cut(s) | 534, 536, 584, 1080, 1088, 1218, 1245, 1310, 1319 |
| HincII | GTYRAC | 1 cut(s) | 1162 |
| HindII | GTYRAC | 1 cut(s) | 1162 |
| HindIII | AAGCTT | 2 cut(s) | 715, 902 |
| HinfI | GANTC | 6 cut(s) | 13, 215, 301, 333, 353, 1037 |
| HpaII | CCGG | 5 cut(s) | 101, 144, 402, 1222, 1256 |
| HphI | GGTGA | 5 cut(s) | 40, 77, 511, 691, 748 |
| Hpy166II | GTNNAC | 1 cut(s) | 1162 |
| Hpy188I | TCNGA | 6 cut(s) | 187, 239, 431, 794, 822, 1018 |
| Hpy188III | TCNNGA | 6 cut(s) | 136, 330, 460, 527, 965, 1054 |
| Hpy8I | GTNNAC | 1 cut(s) | 1162 |
| Hpy99I | CGWCG | 6 cut(s) | 122, 260, 263, 623, 1163, 1166 |
| HpyAV | CCTTC | 6 cut(s) | 29, 92, 142, 224, 379, 685 |
| HpyCH4III | ACNGT | 7 cut(s) | 50, 61, 183, 727, 760, 844, 1013 |
| HpyCH4IV | ACGT | 8 cut(s) | 117, 456, 473, 488, 812, 941, 992, 1073 |
| HpyCH4V | TGCA | 6 cut(s) | 987, 1399, 1415, 1476, 1518, 1549 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 345, 540, 1057, 1077, 1316, 1318, 1350, 1546 |
| HpyF3I | CTNAG | 4 cut(s) | 288, 335, 1446, 1500 |
| HpySE526I | ACGT | 8 cut(s) | 117, 456, 473, 488, 812, 941, 992, 1073 |
| Hsp92I | GRCGYC | 4 cut(s) | 941, 992, 1158, 1310 |
| Hsp92II | CATG | 2 cut(s) | 154, 199 |
| HspAI | GCGC | 9 cut(s) | 534, 536, 584, 1080, 1088, 1218, 1245, 1310, 1319 |
| KasI | GGCGCC | 1 cut(s) | 1309 |
| KroI | GCCGGC | 1 cut(s) | 143 |
| KroNI | GCCGGC | 1 cut(s) | 145 |
| Ksp22I | TGATCA | 2 cut(s) | 1113, 1134 |
| LmnI | GCTCC | 5 cut(s) | 371, 708, 822, 1056, 1350 |
| Lsp1109I | GCAGC | 5 cut(s) | 1094, 1176, 1209, 1423, 1437 |
| LweI | GCATC | 2 cut(s) | 798, 1380 |
| MaeI | CTAG | 5 cut(s) | 768, 1262, 1298, 1557, 1561 |
| MaeII | ACGT | 8 cut(s) | 117, 456, 473, 488, 812, 941, 992, 1073 |
| MaeIII | GTNAC | 3 cut(s) | 478, 727, 1092 |
| MbiI | CCGCTC | 2 cut(s) | 366, 524 |
| MboII | GAAGA | 8 cut(s) | 43, 617, 638, 667, 926, 1031, 1141, 1200 |
| MfeI | CAATTG | 1 cut(s) | 418 |
| MflI | RGATCY | 2 cut(s) | 893, 1293 |
| MhlI | GDGCHC | 3 cut(s) | 294, 429, 519 |
| MluCI | AATT | 5 cut(s) | 418, 925, 1139, 1465, 1543 |
| Mly113I | GGCGCC | 1 cut(s) | 1310 |
| MlyI | GAGTC | 5 cut(s) | 7, 224, 327, 347, 1046 |
| MmeI | TCCRAC | 3 cut(s) | 447, 879, 1065 |
| MroNI | GCCGGC | 1 cut(s) | 143 |
| MseI | TTAA | 2 cut(s) | 435, 1530 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1121 |
| MspA1I | CMGCKG | 1 cut(s) | 1085 |
| MspI | CCGG | 5 cut(s) | 101, 144, 402, 1222, 1256 |
| MspR9I | CCNGG | 1 cut(s) | 1222 |
| MunI | CAATTG | 1 cut(s) | 418 |
| Mva1269I | GAATGC | 1 cut(s) | 1520 |
| MvnI | CGCG | 4 cut(s) | 536, 584, 1166, 1218 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 345, 540, 1057, 1077, 1316, 1318, 1350, 1546 |
| NaeI | GCCGGC | 1 cut(s) | 145 |
| NarI | GGCGCC | 1 cut(s) | 1310 |
| NciI | CCSGG | 1 cut(s) | 1222 |
| NgoMIV | GCCGGC | 1 cut(s) | 143 |
| NheI | GCTAGC | 1 cut(s) | 1261 |
| NlaIII | CATG | 2 cut(s) | 154, 199 |
| NlaIV | GGNNCC | 5 cut(s) | 710, 824, 1295, 1311, 1374 |
| NmeAIII | GCCGAG | 2 cut(s) | 809, 1218 |
| NmuCI | GTSAC | 3 cut(s) | 478, 727, 1092 |
| NsbI | TGCGCA | 1 cut(s) | 1246 |
| PaeR7I | CTCGAG | 1 cut(s) | 386 |
| PauI | GCGCGC | 1 cut(s) | 534 |
| PceI | AGGCCT | 1 cut(s) | 1283 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 252, 479, 836, 1170 |
| PctI | GAATGC | 1 cut(s) | 1520 |
| PdiI | GCCGGC | 1 cut(s) | 145 |
| PfeI | GAWTC | 1 cut(s) | 301 |
| Pfl23II | CGTACG | 1 cut(s) | 61 |
| PflFI | GACNNNGTC | 1 cut(s) | 725 |
| PinAI | ACCGGT | 1 cut(s) | 100 |
| PkrI | GCNGC | 6 cut(s) | 1084, 1087, 1191, 1199, 1438, 1452 |
| PleI | GAGTC | 5 cut(s) | 7, 223, 327, 347, 1045 |
| PluTI | GGCGCC | 1 cut(s) | 1313 |
| PpsI | GAGTC | 5 cut(s) | 7, 223, 327, 347, 1045 |
| PshBI | ATTAAT | 1 cut(s) | 1530 |
| Psp124BI | GAGCTC | 2 cut(s) | 294, 519 |
| Psp1406I | AACGTT | 1 cut(s) | 812 |
| PspFI | CCCAGC | 2 cut(s) | 538, 1025 |
| PspLI | CGTACG | 1 cut(s) | 61 |
| PspN4I | GGNNCC | 5 cut(s) | 710, 824, 1295, 1311, 1374 |
| PspPI | GGNCC | 2 cut(s) | 66, 884 |
| PspXI | VCTCGAGB | 1 cut(s) | 386 |
| PstNI | CAGNNNCTG | 1 cut(s) | 181 |
| PsuI | RGATCY | 2 cut(s) | 893, 1293 |
| PsyI | GACNNNGTC | 1 cut(s) | 725 |
| PteI | GCGCGC | 1 cut(s) | 534 |
| RsaI | GTAC | 7 cut(s) | 63, 416, 557, 566, 601, 935, 955 |
| RsaNI | GTAC | 7 cut(s) | 62, 415, 556, 565, 600, 934, 954 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1121 |
| SacI | GAGCTC | 2 cut(s) | 294, 519 |
| SalI | GTCGAC | 1 cut(s) | 1160 |
| SaqAI | TTAA | 2 cut(s) | 435, 1530 |
| SatI | GCNGC | 6 cut(s) | 1083, 1086, 1190, 1198, 1437, 1451 |
| Sau96I | GGNCC | 2 cut(s) | 66, 884 |
| ScaI | AGTACT | 2 cut(s) | 601, 955 |
| SchI | GAGTC | 5 cut(s) | 7, 224, 327, 347, 1046 |
| ScrFI | CCNGG | 1 cut(s) | 1222 |
| SduI | GDGCHC | 3 cut(s) | 294, 429, 519 |
| SfaNI | GCATC | 2 cut(s) | 798, 1380 |
| SfoI | GGCGCC | 1 cut(s) | 1311 |
| Sfr274I | CTCGAG | 1 cut(s) | 386 |
| SgrDI | CGTCGACG | 1 cut(s) | 1160 |
| SinI | GGWCC | 1 cut(s) | 66 |
| SlaI | CTCGAG | 1 cut(s) | 386 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1121 |
| SmlI | CTYRAG | 3 cut(s) | 8, 23, 386 |
| SmoI | CTYRAG | 3 cut(s) | 8, 23, 386 |
| Sse9I | AATT | 5 cut(s) | 418, 925, 1139, 1465, 1543 |
| SseBI | AGGCCT | 1 cut(s) | 1283 |
| SsiI | CCGC | 7 cut(s) | 202, 307, 364, 376, 522, 582, 1085 |
| SspDI | GGCGCC | 1 cut(s) | 1309 |
| SspMI | CTAG | 5 cut(s) | 768, 1262, 1298, 1557, 1561 |
| SstI | GAGCTC | 2 cut(s) | 294, 519 |
| StuI | AGGCCT | 1 cut(s) | 1283 |
| StyD4I | CCNGG | 1 cut(s) | 1220 |
| StyI | CCWWGG | 2 cut(s) | 1284, 1297 |
| TaaI | ACNGT | 7 cut(s) | 50, 61, 183, 727, 760, 844, 1013 |
| TaiI | ACGT | 8 cut(s) | 120, 459, 476, 491, 815, 944, 995, 1076 |
| TaqII | GACCGA | 1 cut(s) | 1445 |
| TasI | AATT | 5 cut(s) | 418, 925, 1139, 1465, 1543 |
| TatI | WGTACW | 4 cut(s) | 555, 599, 933, 953 |
| TauI | GCSGC | 1 cut(s) | 1088 |
| TfiI | GAWTC | 1 cut(s) | 301 |
| Tru1I | TTAA | 2 cut(s) | 435, 1530 |
| Tru9I | TTAA | 2 cut(s) | 435, 1530 |
| TscAI | CASTG | 1 cut(s) | 186 |
| TseFI | GTSAC | 3 cut(s) | 478, 727, 1092 |
| TseI | GCWGC | 5 cut(s) | 1082, 1189, 1197, 1436, 1450 |
| Tsp45I | GTSAC | 3 cut(s) | 478, 727, 1092 |
| TspDTI | ATGAA | 1 cut(s) | 1019 |
| TspGWI | ACGGA | 3 cut(s) | 79, 402, 840 |
| TspRI | CASTG | 1 cut(s) | 186 |
| Tth111I | GACNNNGTC | 1 cut(s) | 725 |
| VpaK11BI | GGWCC | 1 cut(s) | 66 |
| VspI | ATTAAT | 1 cut(s) | 1530 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 23, 173, 1288 |
| XapI | RAATTY | 2 cut(s) | 925, 1139 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 878 |
| XhoI | CTCGAG | 1 cut(s) | 386 |
| XmaJI | CCTAGG | 1 cut(s) | 1297 |
| XmiI | GTMKAC | 1 cut(s) | 1161 |
| XspI | CTAG | 5 cut(s) | 768, 1262, 1298, 1557, 1561 |
| ZraI | GACGTC | 2 cut(s) | 942, 993 |
| ZrmI | AGTACT | 2 cut(s) | 601, 955 |