Prupe.2G302400_v2.0.a1

Tic22-like family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
28971435 .. 28975331
3897 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G302400.2

Sequence Viewer

Length: 1620 bp
ATGGCCTCACCAACCGAGCCAGCACACAAGAAGCAAGCCAGACCCATAACCCACTTGGTCCACTCCACCGCAGCCAATCTCCTCTCTCTCTTCGCCTCCCCCAAAACGACGCCGTCGACCCCGTCAACAATCCGCGTCGCGTTCCTCTTCCCCAACTCGCCGAAACCACTCGCCTTCCATTCGGCTCAACCGGACTTCAAATCCGCAATGAAGGGCGTGGAGTCCTCGTCTGAGTCAAACTCGGGGTTCCCGTCAACGGTCAGGATTGCAGGGCTGAACTCGAATATCAAGGGTGGTGGGCCGGCCTTTGTGGGCCAGGTCTTCAGTATGTGTGACCTCTCTGGGACTGGTCTCATGGCCGTCTCCACTCACTTTGACATACCCTTCATTTCCAAAAGAACTCCTGAGTGGCTCAAGAAGATGTTCGCATCAGTTACTAATAGTGAGAGAAATGGCCCCGTGTTCCGTTTTTTTATGGATTTAGGCGATGCAGTTACATATGTGAAACGGCTGAATATTCCAAGTGGTGTGGTGGGTGCTTGCCGTCTTGATTTAGCATATGAACATTTCAAGGAAAAGCCCCATTTGTTCCAGTTTGTTCCAAATGAGAAACAGGTCAAGGCAGCTAACAAACTTCTCAAGGCAATGCAGCAGAATGGCAGATGCAAAAGGGTTGACGGAGTCCCAGTTTTTAGTGCTCAAAACTTGGATATTGCAATAGCAAGCTCAGATGGGATCAAATGGTATACTCCCTACTTTTTTGATAAAAACATGCTTGATAACATTCTTGAGGAATCTGTAGATCAGCATTTCCATTCTTTAATTCAAACTCGGCACATGCAGCGTCGACGGGATGTGATTGATGACAGCTTGCCAGCGGAAGTAATTGAAGAGATGGGAGATAACTTATGGGAGCCTCCAGAGGTTCAGGAAGTAATGGATGAAATGGGGAATCCTGGAATACCTTTGAGTGTCATTTCTAAGGCTGCTGAAATGCAACTCCTTTATGCTGTTGATAAAGTACTTCTTGGTAATAGGTGGTTAAGGAAAGCAACTGGCATTCAACCAAAATTCCCTTATATGGTTGACTCTTTTGAGAGAAGGAGTGCTGCCTCTTTTCTTAGAGCTTCTCAGTCATCTAACCGCCTTGCCAACAGGGAAGCAGTAAATGATAATAAAGATTCTGTACACTGTAGCACTTCAGAGGTTAAATTAAATGATGATATTCAGACCAATAAAGGAAACAAATTAGATCTCCGGTTCCCTTTTGGAGATTGGTTTAGTCATCTCTTGTTGAAGCAAAAGGACCAAACTGAAGAGTTGTCAAAGGAATGCGTAGAGCTGAGCTCACAGCAAAATCCAAACCTTCCTAAGATTACAATGGTTGGCATTTCAACTGGTGAGGCAGGGCAGATGAGTAAAGCAACTTTAAAGAAGACGATGGAGGATTTGACGAAAGAATTGGAGCAGCCGGATGCAGGAAATGCTGGTGGTAGTGATATGAGTAATGAGTTAAGATTTGAAGATAGAGATCCACTATTTGTGGCTAATGTAGGTGATTATTATTCTGGCATGGCAAGGACAGGTTCAGCTAGATGGGTTCGTGGAGGAAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

59.83

Weight (kDa)

7.2

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012179)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 116, 746, 847
AccII CGCG 2 cut(s) 135, 140
AciI CCGC 5 cut(s) 69, 133, 204, 878, 1144
AclWI GGATC 2 cut(s) 743, 1526
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 1070
AcuI CTGAAG 3 cut(s) 307, 1185, 1335
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 2 cut(s) 1023, 1188
AfiI CCNNNNNNNGG 3 cut(s) 256, 1081, 1478
AgsI TTSAA 8 cut(s) 199, 571, 827, 890, 1064, 1297, 1395, 1523
AjnI CCWGG 2 cut(s) 315, 955
AluBI AGCT 7 cut(s) 626, 726, 870, 1127, 1342, 1347, 1592
AluI AGCT 7 cut(s) 626, 726, 870, 1127, 1342, 1347, 1592
Alw21I GWGCWC 2 cut(s) 700, 1349
Alw26I GTCTC 2 cut(s) 356, 367
AlwI GGATC 2 cut(s) 743, 1526
Ama87I CYCGRG 1 cut(s) 241
AoxI GGCC 6 cut(s) 3, 299, 303, 313, 357, 454
ApeKI GCWGC 7 cut(s) 71, 623, 649, 841, 986, 1109, 1468
ApoI RAATTY 1 cut(s) 1070
Asp700I GAANNNNTTC 1 cut(s) 422
AspS9I GGNCC 5 cut(s) 58, 299, 313, 455, 1306
AsuHPI GGTGA 2 cut(s) 1412, 1568
AvaI CYCGRG 1 cut(s) 241
AvaII GGWCC 2 cut(s) 58, 1306
BanII GRGCYC 1 cut(s) 1349
BbsI GAAGAC 2 cut(s) 313, 1442
Bbv12I GWGCWC 2 cut(s) 700, 1349
BbvI GCAGC 7 cut(s) 83, 635, 661, 853, 973, 1096, 1480
BccI CCATC 4 cut(s) 725, 889, 1435, 1590
BceAI ACGGC 4 cut(s) 97, 344, 524, 528
BciT130I CCWGG 2 cut(s) 317, 957
BcoDI GTCTC 2 cut(s) 356, 367
BfaI CTAG 1 cut(s) 1593
BfmI CTRYAG 2 cut(s) 798, 1192
BglII AGATCT 1 cut(s) 1252
BisI GCNGC 7 cut(s) 72, 624, 650, 842, 987, 1110, 1469
BlpI GCTNAGC 1 cut(s) 1343
BlsI GCNGC 7 cut(s) 73, 625, 651, 843, 988, 1111, 1470
BmcAI AGTACT 1 cut(s) 1023
Bme1390I CCNGG 2 cut(s) 317, 957
Bme18I GGWCC 2 cut(s) 58, 1306
BmeT110I CYCGRG 1 cut(s) 241
BmgT120I GGNCC 5 cut(s) 58, 299, 313, 455, 1306
BmiI GGNNCC 4 cut(s) 248, 457, 915, 1262
BmrFI CCNGG 2 cut(s) 317, 957
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 4 cut(s) 437, 478, 653, 1465
BmuI ACTGGG 1 cut(s) 680
BpiI GAAGAC 2 cut(s) 313, 1442
BplI GAGNNNNNCTC 4 cut(s) 224, 256, 1331, 1363
BpmI CTGGAG 1 cut(s) 903
Bpu1102I GCTNAGC 1 cut(s) 1343
BpuEI CTTGAG 3 cut(s) 398, 623, 809
BsaBI GATNNNNATC 1 cut(s) 1530
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 356
BsaWI WCCGGW 2 cut(s) 190, 1257
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 672, 702
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 1081, 1478
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 5 cut(s) 352, 592, 686, 1060, 1402
Bse3DI GCAATG 2 cut(s) 213, 651
Bse8I GATNNNNATC 1 cut(s) 1530
BseBI CCWGG 2 cut(s) 317, 957
BseGI GGATG 3 cut(s) 859, 946, 1480
BseJI GATNNNNATC 1 cut(s) 1530
BseLI CCNNNNNNNGG 3 cut(s) 256, 1081, 1478
BseMI GCAATG 2 cut(s) 213, 651
BseMII CTCAG 5 cut(s) 222, 396, 741, 1145, 1334
BseNI ACTGG 5 cut(s) 352, 592, 686, 1060, 1402
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 7 cut(s) 83, 635, 661, 853, 973, 1096, 1480
Bsh1236I CGCG 2 cut(s) 135, 140
BshFI GGCC 6 cut(s) 5, 301, 305, 315, 359, 456
BsiHKAI GWGCWC 2 cut(s) 700, 1349
BsiHKCI CYCGRG 1 cut(s) 241
BsiSI CCGG 4 cut(s) 191, 302, 1258, 1472
BslFI GGGAC 2 cut(s) 358, 668
BslI CCNNNNNNNGG 3 cut(s) 256, 1081, 1478
BsmAI GTCTC 2 cut(s) 356, 367
BsmBI CGTCTC 1 cut(s) 367
BsmFI GGGAC 2 cut(s) 358, 668
BsmI GAATGC 2 cut(s) 1059, 1337
BsnI GGCC 6 cut(s) 5, 301, 305, 315, 359, 456
Bso31I GGTCTC 1 cut(s) 356
BsoBI CYCGRG 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 700, 1349
Bsp1407I TGTACA 1 cut(s) 1186
Bsp143I GATC 4 cut(s) 735, 802, 1252, 1531
Bsp1720I GCTNAGC 1 cut(s) 1343
BspACI CCGC 5 cut(s) 69, 133, 204, 878, 1144
BspANI GGCC 6 cut(s) 5, 301, 305, 315, 359, 456
BspCNI CTCAG 5 cut(s) 223, 397, 740, 1144, 1335
BspFNI CGCG 2 cut(s) 135, 140
BspLI GGNNCC 4 cut(s) 248, 457, 915, 1262
BspPI GGATC 2 cut(s) 743, 1526
BspTNI GGTCTC 1 cut(s) 356
BsrDI GCAATG 2 cut(s) 213, 651
BsrFI RCCGGY 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 1186
BsrI ACTGG 5 cut(s) 352, 592, 686, 1060, 1402
BssAI RCCGGY 1 cut(s) 301
BssMI GATC 4 cut(s) 735, 802, 1252, 1531
BssNAI GTATAC 1 cut(s) 747
BssNI GRCGYC 1 cut(s) 110
Bst1107I GTATAC 1 cut(s) 747
Bst2UI CCWGG 2 cut(s) 317, 957
Bst4CI ACNGT 2 cut(s) 259, 1193
Bst6I CTCTTC 4 cut(s) 95, 152, 885, 1311
BstACI GRCGYC 1 cut(s) 110
BstAPI GCANNNNNTGC 1 cut(s) 1484
BstAUI TGTACA 1 cut(s) 1186
BstC8I GCNNGC 7 cut(s) 21, 36, 303, 541, 724, 872, 876
BstDEI CTNAG 8 cut(s) 231, 405, 727, 981, 1121, 1131, 1343, 1371
BstF5I GGATG 3 cut(s) 859, 946, 1480
BstFNI CGCG 2 cut(s) 135, 140
BstKTI GATC 4 cut(s) 738, 805, 1255, 1534
BstMAI GTCTC 2 cut(s) 356, 367
BstMBI GATC 4 cut(s) 735, 802, 1252, 1531
BstMWI GCNNNNNNNGC 2 cut(s) 841, 1484
BstNI CCWGG 2 cut(s) 317, 957
BstNSI RCATGY 2 cut(s) 775, 841
BstSCI CCNGG 2 cut(s) 315, 955
BstSFI CTRYAG 2 cut(s) 798, 1192
BstUI CGCG 2 cut(s) 135, 140
BstV1I GCAGC 7 cut(s) 83, 635, 661, 853, 973, 1096, 1480
BstV2I GAAGAC 2 cut(s) 313, 1442
BstX2I RGATCY 2 cut(s) 1252, 1531
BstYI RGATCY 2 cut(s) 1252, 1531
BstZ17I GTATAC 1 cut(s) 747
BsuRI GGCC 6 cut(s) 5, 301, 305, 315, 359, 456
BtgZI GCGATG 1 cut(s) 501
BtsCI GGATG 3 cut(s) 859, 946, 1480
BtsIMutI CAGTG 1 cut(s) 1189
Cac8I GCNNGC 7 cut(s) 21, 36, 303, 541, 724, 872, 876
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 5 cut(s) 58, 299, 313, 455, 1306
CseI GACGC 3 cut(s) 118, 124, 833
Csp6I GTAC 2 cut(s) 1022, 1187
CspCI CAANNNNNGTGG 6 cut(s) 277, 312, 355, 390, 510, 545
CviAII CATG 4 cut(s) 355, 772, 838, 1573
CviQI GTAC 2 cut(s) 1022, 1187
DdeI CTNAG 8 cut(s) 231, 405, 727, 981, 1121, 1131, 1343, 1371
DpnI GATC 4 cut(s) 737, 804, 1254, 1533
DpnII GATC 4 cut(s) 735, 802, 1252, 1531
DraI TTTAAA 1 cut(s) 1431
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 4 cut(s) 95, 152, 885, 1311
EarI CTCTTC 4 cut(s) 95, 152, 885, 1311
Ecl136II GAGCTC 1 cut(s) 1347
Eco24I GRGCYC 1 cut(s) 1349
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 2 cut(s) 58, 1306
Eco53kI GAGCTC 1 cut(s) 1347
Eco57I CTGAAG 3 cut(s) 307, 1185, 1335
Eco88I CYCGRG 1 cut(s) 241
EcoICRI GAGCTC 1 cut(s) 1347
EcoRII CCWGG 2 cut(s) 315, 955
EcoT38I GRGCYC 1 cut(s) 1349
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 4 cut(s) 358, 775, 841, 1576
FalI AAGNNNNNCTT 2 cut(s) 1011, 1043
FaqI GGGAC 2 cut(s) 358, 668
FatI CATG 4 cut(s) 354, 771, 837, 1572
FauNDI CATATG 2 cut(s) 499, 559
FblI GTMKAC 3 cut(s) 116, 746, 847
Fnu4HI GCNGC 7 cut(s) 72, 624, 650, 842, 987, 1110, 1469
FokI GGATG 3 cut(s) 866, 953, 1487
FriOI GRGCYC 1 cut(s) 1349
FseI GGCCGGCC 1 cut(s) 305
Fsp4HI GCNGC 7 cut(s) 72, 624, 650, 842, 987, 1110, 1469
FspBI CTAG 1 cut(s) 1593
GluI GCNGC 7 cut(s) 72, 624, 650, 842, 987, 1110, 1469
GsuI CTGGAG 1 cut(s) 903
HaeIII GGCC 6 cut(s) 5, 301, 305, 315, 359, 456
HapII CCGG 4 cut(s) 191, 302, 1258, 1472
HgaI GACGC 3 cut(s) 118, 124, 833
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 4 cut(s) 358, 775, 841, 1576
HincII GTYRAC 6 cut(s) 117, 126, 255, 676, 848, 1087
HindII GTYRAC 6 cut(s) 117, 126, 255, 676, 848, 1087
HinfI GANTC 7 cut(s) 221, 233, 681, 794, 952, 1088, 1181
HpaII CCGG 4 cut(s) 191, 302, 1258, 1472
HphI GGTGA 2 cut(s) 1412, 1568
Hpy166II GTNNAC 9 cut(s) 61, 117, 126, 255, 676, 747, 848, 1087, 1189
Hpy188I TCNGA 4 cut(s) 232, 730, 1204, 1230
Hpy188III TCNNGA 7 cut(s) 262, 404, 415, 548, 788, 920, 929
Hpy8I GTNNAC 9 cut(s) 61, 117, 126, 255, 676, 747, 848, 1087, 1189
Hpy99I CGWCG 5 cut(s) 112, 118, 140, 849, 852
HpyAV CCTTC 5 cut(s) 184, 205, 394, 1095, 1376
HpyCH4III ACNGT 2 cut(s) 259, 1193
HpyCH4V TGCA 8 cut(s) 269, 491, 649, 666, 716, 841, 997, 1478
HpyF10VI GCNNNNNNNGC 2 cut(s) 841, 1484
HpyF3I CTNAG 8 cut(s) 231, 405, 727, 981, 1121, 1131, 1343, 1371
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 4 cut(s) 358, 775, 841, 1576
KroI GCCGGC 1 cut(s) 301
KroNI GCCGGC 1 cut(s) 303
Kzo9I GATC 4 cut(s) 735, 802, 1252, 1531
LmnI GCTCC 2 cut(s) 913, 1465
Lsp1109I GCAGC 7 cut(s) 83, 635, 661, 853, 973, 1096, 1480
LweI GCATC 4 cut(s) 437, 478, 653, 1465
MaeI CTAG 1 cut(s) 1593
MaeIII GTNAC 3 cut(s) 332, 433, 493
MalI GATC 4 cut(s) 737, 804, 1254, 1533
MboI GATC 4 cut(s) 735, 802, 1252, 1531
MboII GAAGA 8 cut(s) 82, 139, 313, 430, 902, 1328, 1447, 1535
MflI RGATCY 2 cut(s) 1252, 1531
MhlI GDGCHC 2 cut(s) 700, 1349
MluCI AATT 7 cut(s) 822, 885, 1070, 1211, 1247, 1460, 1615
MlyI GAGTC 4 cut(s) 230, 242, 690, 1082
MroNI GCCGGC 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 422
MseI TTAA 6 cut(s) 821, 1043, 1209, 1214, 1430, 1514
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 4 cut(s) 191, 302, 1258, 1472
MspR9I CCNGG 2 cut(s) 317, 957
Mva1269I GAATGC 2 cut(s) 1059, 1337
MvaI CCWGG 2 cut(s) 317, 957
MvnI CGCG 2 cut(s) 135, 140
MwoI GCNNNNNNNGC 2 cut(s) 841, 1484
NaeI GCCGGC 1 cut(s) 303
NdeI CATATG 2 cut(s) 499, 559
NdeII GATC 4 cut(s) 735, 802, 1252, 1531
NgoMIV GCCGGC 1 cut(s) 301
NlaIII CATG 4 cut(s) 358, 775, 841, 1576
NlaIV GGNNCC 4 cut(s) 248, 457, 915, 1262
NmeAIII GCCGAG 1 cut(s) 811
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 2 cut(s) 775, 841
PcsI WCGNNNNNNNCGW 2 cut(s) 113, 248
PctI GAATGC 2 cut(s) 1059, 1337
PdiI GCCGGC 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 422
PfeI GAWTC 3 cut(s) 794, 952, 1181
PflFI GACNNNGTC 3 cut(s) 112, 121, 680
PfoI TCCNGGA 1 cut(s) 955
PkrI GCNGC 7 cut(s) 73, 625, 651, 843, 988, 1111, 1470
PleI GAGTC 4 cut(s) 229, 241, 689, 1082
PpsI GAGTC 4 cut(s) 229, 241, 689, 1082
Psp124BI GAGCTC 1 cut(s) 1349
Psp6I CCWGG 2 cut(s) 315, 955
PspGI CCWGG 2 cut(s) 315, 955
PspN4I GGNNCC 4 cut(s) 248, 457, 915, 1262
PspPI GGNCC 5 cut(s) 58, 299, 313, 455, 1306
PsuI RGATCY 2 cut(s) 1252, 1531
PsyI GACNNNGTC 3 cut(s) 112, 121, 680
RigI GGCCGGCC 1 cut(s) 305
RsaI GTAC 2 cut(s) 1023, 1188
RsaNI GTAC 2 cut(s) 1022, 1187
SacI GAGCTC 1 cut(s) 1349
SalI GTCGAC 2 cut(s) 115, 846
SaqAI TTAA 6 cut(s) 821, 1043, 1209, 1214, 1430, 1514
SatI GCNGC 7 cut(s) 72, 624, 650, 842, 987, 1110, 1469
Sau3AI GATC 4 cut(s) 735, 802, 1252, 1531
Sau96I GGNCC 5 cut(s) 58, 299, 313, 455, 1306
ScaI AGTACT 1 cut(s) 1023
SchI GAGTC 4 cut(s) 230, 242, 690, 1082
ScrFI CCNGG 2 cut(s) 317, 957
SduI GDGCHC 2 cut(s) 700, 1349
SfaNI GCATC 4 cut(s) 437, 478, 653, 1465
SfcI CTRYAG 2 cut(s) 798, 1192
SgrDI CGTCGACG 1 cut(s) 846
SinI GGWCC 2 cut(s) 58, 1306
SmlI CTYRAG 3 cut(s) 413, 638, 788
SmoI CTYRAG 3 cut(s) 413, 638, 788
Sse9I AATT 7 cut(s) 822, 885, 1070, 1211, 1247, 1460, 1615
SsiI CCGC 5 cut(s) 69, 133, 204, 878, 1144
SspI AATATT 1 cut(s) 517
SspMI CTAG 1 cut(s) 1593
SstI GAGCTC 1 cut(s) 1349
StyD4I CCNGG 2 cut(s) 315, 955
TaaI ACNGT 2 cut(s) 259, 1193
TaqI TCGA 3 cut(s) 116, 281, 847
TasI AATT 7 cut(s) 822, 885, 1070, 1211, 1247, 1460, 1615
TatI WGTACW 2 cut(s) 1021, 1186
TfiI GAWTC 3 cut(s) 794, 952, 1181
Tru1I TTAA 6 cut(s) 821, 1043, 1209, 1214, 1430, 1514
Tru9I TTAA 6 cut(s) 821, 1043, 1209, 1214, 1430, 1514
TscAI CASTG 1 cut(s) 1196
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 7 cut(s) 71, 623, 649, 841, 986, 1109, 1468
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 4 cut(s) 224, 376, 576, 957
TspGWI ACGGA 2 cut(s) 455, 693
TspRI CASTG 1 cut(s) 1196
Tth111I GACNNNGTC 3 cut(s) 112, 121, 680
VpaK11BI GGWCC 2 cut(s) 58, 1306
XapI RAATTY 1 cut(s) 1070
XceI RCATGY 2 cut(s) 775, 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 3 cut(s) 116, 746, 847
XmnI GAANNNNTTC 1 cut(s) 422
XspI CTAG 1 cut(s) 1593
ZrmI AGTACT 1 cut(s) 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.