RLG00000026419

Tic22-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012179
Physical Location & Seq
Reverse (-)
2930467 .. 2933615
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026419

Sequence Viewer

Length: 1623 bp
ATGGCCTCACCAATCGAGCCACCCCACCACCCAAAACCCATCGCCCACTTGCTCAACTCCGCCACCGCCAACCTCCTCTCCCTCTTCGCCGCCCCCAAAACGACGCCGTCTTCTTCCTCCCCTTCCACAATCCGCCTCGCCCTCTTCCTACCCACCTCCCCCAGACCCCTCTCTCCTCCTCCTCCTCCTCCTCAACCCGCCGCCATGAAGACCGCCGCGCCGCCGCCGCCGTCGGAGTCGACCTCGTCCTCGTTCCCGGCGACGGTCAAGATTGCCGGGCTCAATTCCATGATCAAGGGCAGTGGGCCCGCCTTTGTGGGCCAGGTCTTCAGTATGTGCGACCTCTCCGGCACTGGGCTTATGGCCGTCTCCACCCACTTCGATATTCCCTTCATTTCCAAAAGAACTCCTGAGTGGCTTAAGAAGATGTTTGCATCGGTGACTAATAGCGAGAGAAATGATGGCCCGGTGTTTCGGTTTTTTATGGATTTAGGAGATGCAGTTACGTATGTGAAACGGCTTAATATTCCGAGTGGAGTGGTGGGTGCTTGTCGGCTGGATTTGGCTTATGAGCATTTCAAGGAAAAGCCCCACTTATTCCAGTTTGTTCCAAATGAGAAACAGGTCAAGGCAGCTAACAAACTTCTAAAGGGAAACGCAGAGAATGGCAAATGTAAAAGAGTTGATGGAGTCCCAGTTTTTAGTGCTCAAAACTTGGATATTGCAATAGCAAGTCCAGATGGGCTCAAATGGTATACACCCTACTTTTTTGATAAAAACATGCTTGATAACATTCTTGAGGAATCTGTAGATCAGCATTTCCATTCTTTAATTCAAACTCGGCACATGCAGCGGAGAAGGGATGTGGTTGATGACAACTTGGCTGCAGAAGTGATTGAAGAGATGGGTGATAACTTATGGGAACCTCCAGAGGTTCAGGAAGTGATGGATGAAATAGGGAATCCTGGAATACCATTGAGTGTCATATCTAAGGCAGCGGAAATGCAGCTTCATTACACTGTTGACAAAGTAATTCTGGGTAATAGGTGGCTGCGGAAGGCAACTGGCATTCAACCAAAATTCCCTTATATGATTGATACTTTTGAGAGAAGGAGTGCAGCTTCTTTTCTTAGAGCTTCCAAGTCAACCAACTGTCTTGCCAATTGTGAAGCAGTAAATGATAATAAAGATTCTCTACAGAGTAGCACTTGCAATATTAAACCAAAGGGTGATATGCAGACCAACAAAGGAAACAGATCCGGTGTCTGGTTTCCTTTTGGAGATTGGTTTAGTCATCTATGGTCAAAACAAAAGCACCAAGATGGAATCTTGTCCACACAATATGTCGATGAGACCTCACAGCTAAATGTACACCTTCCTAAGATTACAATGGTTGGCATTTCATCAACTGGTGAGGCAGGGACCATGAGTAGAGAAAGTGTAAGGAAAACAATGGACGATTTAACAAGAGAACTGGAGCAGACAGATCCAGAAAAAGCCAGTGGTATTGAGGCGAGCGATGACTTTAGATTTGAAGATAGAGATCCACTATTTGTAGCAAATGTGGGTGATTACTATTCTGGCAAGGCAAAGGGTGGAGCACGATTTAGGGTTCGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tic22

Protein Analysis

541

Amino Acids

59.74

Weight (kDa)

6.91

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tic22 PF04278 193 - 269 8.6e-07 Tic22-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012179)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62650
fragaria_vesca FvH4_7g30450 FvH4_7g30450
malus_domestica MD01G1210100.v1.1 MD07G1280200.v1.1
prunus_persica Prupe.2G302400_v2.0.a1 Prupe.2G302400_v2.0.a1 Prupe.2G302400_v2.0.a1
pyrus_communis pycom07g25480
rosa_chinensis RchiOBHm_Chr1g0378611
rosa_laevigata RLG00000026419
rosa_multiflora Rmu_sc0002395.1_g000010
rosa_roxburghii Rroxscaffold_4G00280360
rosa_rugosa Rorug01G0409900
rosa_samantha Rh1AG431400 Rh1BG389700 Rh1CG403000 Rh1DG420900
rosa_wichuraiana Rw1G037790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 239, 755
AccII CGCG 1 cut(s) 218
AclWI GGATC 3 cut(s) 1251, 1481, 1538
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 1079
AcuI CTGAAG 1 cut(s) 313
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 1371
AfiI CCNNNNNNNGG 3 cut(s) 262, 354, 1266
AflII CTTAAG 1 cut(s) 419
AgsI TTSAA 5 cut(s) 580, 836, 899, 1073, 1535
AjnI CCWGG 2 cut(s) 321, 964
AluBI AGCT 5 cut(s) 635, 1009, 1121, 1136, 1363
AluI AGCT 5 cut(s) 635, 1009, 1121, 1136, 1363
Alw21I GWGCWC 2 cut(s) 709, 1603
Alw26I GTCTC 2 cut(s) 373, 1346
AlwI GGATC 3 cut(s) 1251, 1481, 1538
AoxI GGCC 5 cut(s) 3, 305, 319, 363, 463
ApaI GGGCCC 1 cut(s) 309
ApeKI GCWGC 7 cut(s) 632, 850, 884, 995, 1006, 1051, 1118
ApoI RAATTY 1 cut(s) 1079
ArsI GACNNNNNNTTYG 2 cut(s) 1514, 1546
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 5 cut(s) 305, 306, 319, 464, 1422
AsuC2I CCSGG 3 cut(s) 257, 277, 467
AsuHPI GGTGA 5 cut(s) 451, 920, 1241, 1424, 1580
AvaII GGWCC 1 cut(s) 1422
BaeGI GKGCMC 1 cut(s) 309
BanII GRGCYC 3 cut(s) 282, 309, 747
BbsI GAAGAC 3 cut(s) 102, 215, 319
Bbv12I GWGCWC 2 cut(s) 709, 1603
BbvI GCAGC 7 cut(s) 644, 862, 871, 1007, 1018, 1038, 1130
BccI CCATC 7 cut(s) 47, 455, 680, 734, 898, 940, 1316
BceAI ACGGC 4 cut(s) 91, 214, 350, 533
BciT130I CCWGG 2 cut(s) 323, 966
BclI TGATCA 1 cut(s) 291
BcnI CCSGG 3 cut(s) 257, 277, 467
BcoDI GTCTC 2 cut(s) 373, 1346
BfmI CTRYAG 3 cut(s) 807, 885, 1196
BfrI CTTAAG 1 cut(s) 419
Bme1390I CCNGG 5 cut(s) 257, 277, 323, 467, 966
Bme18I GGWCC 1 cut(s) 1422
BmgT120I GGNCC 5 cut(s) 305, 306, 319, 464, 1422
BmiI GGNNCC 3 cut(s) 307, 924, 1423
BmrFI CCNGG 5 cut(s) 257, 277, 323, 467, 966
BmrI ACTGGG 2 cut(s) 363, 689
BmsI GCATC 2 cut(s) 443, 487
BmuI ACTGGG 2 cut(s) 363, 689
BpiI GAAGAC 3 cut(s) 102, 215, 319
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 2 cut(s) 912, 1496
BpuEI CTTGAG 1 cut(s) 818
BpuMI CCSGG 3 cut(s) 257, 277, 467
BsaAI YACGTR 1 cut(s) 507
BsaBI GATNNNNATC 1 cut(s) 1542
BsaHI GRCGYC 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 1346
BsaWI WCCGGW 1 cut(s) 1259
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 486, 516, 681, 711
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 354, 1266
Bse1I ACTGG 7 cut(s) 358, 601, 695, 1069, 1414, 1479, 1500
Bse8I GATNNNNATC 1 cut(s) 1542
BseBI CCWGG 2 cut(s) 323, 966
BseGI GGATG 2 cut(s) 868, 955
BseJI GATNNNNATC 1 cut(s) 1542
BseLI CCNNNNNNNGG 3 cut(s) 262, 354, 1266
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 7 cut(s) 358, 601, 695, 1069, 1414, 1479, 1500
BseRI GAGGAG 7 cut(s) 65, 165, 168, 171, 174, 177, 180
BseSI GKGCMC 1 cut(s) 309
BseXI GCAGC 7 cut(s) 644, 862, 871, 1007, 1018, 1038, 1130
BsgI GTGCAG 1 cut(s) 1137
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 5 cut(s) 5, 307, 321, 365, 465
BsiHKAI GWGCWC 2 cut(s) 709, 1603
BsiSI CCGG 5 cut(s) 257, 276, 348, 467, 1260
BslFI GGGAC 2 cut(s) 677, 1435
BslI CCNNNNNNNGG 3 cut(s) 262, 354, 1266
BsmAI GTCTC 2 cut(s) 373, 1346
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 2 cut(s) 677, 1435
BsmI GAATGC 1 cut(s) 1068
BsnI GGCC 5 cut(s) 5, 307, 321, 365, 465
Bso31I GGTCTC 1 cut(s) 1346
Bsp120I GGGCCC 1 cut(s) 305
Bsp1286I GDGCHC 5 cut(s) 282, 309, 709, 747, 1603
Bsp1407I TGTACA 1 cut(s) 1369
Bsp143I GATC 5 cut(s) 291, 811, 1256, 1486, 1543
BspANI GGCC 5 cut(s) 5, 307, 321, 365, 465
BspCNI CTCAG 1 cut(s) 403
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 3 cut(s) 307, 924, 1423
BspMAI CTGCAG 1 cut(s) 889
BspPI GGATC 3 cut(s) 1251, 1481, 1538
BspTI CTTAAG 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 1346
BsrGI TGTACA 1 cut(s) 1369
BsrI ACTGG 7 cut(s) 358, 601, 695, 1069, 1414, 1479, 1500
BssMI GATC 5 cut(s) 291, 811, 1256, 1486, 1543
BssNAI GTATAC 1 cut(s) 756
BssNI GRCGYC 1 cut(s) 104
Bst1107I GTATAC 1 cut(s) 756
Bst2UI CCWGG 2 cut(s) 323, 966
Bst4CI ACNGT 3 cut(s) 265, 1021, 1154
Bst6I CTCTTC 3 cut(s) 89, 149, 894
BstACI GRCGYC 1 cut(s) 104
BstAFI CTTAAG 1 cut(s) 419
BstAUI TGTACA 1 cut(s) 1369
BstBAI YACGTR 1 cut(s) 507
BstC8I GCNNGC 2 cut(s) 309, 1516
BstDEI CTNAG 4 cut(s) 411, 990, 1130, 1380
BstF5I GGATG 2 cut(s) 868, 955
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 5 cut(s) 294, 814, 1259, 1489, 1546
BstMAI GTCTC 2 cut(s) 373, 1346
BstMBI GATC 5 cut(s) 291, 811, 1256, 1486, 1543
BstMWI GCNNNNNNNGC 2 cut(s) 226, 850
BstNI CCWGG 2 cut(s) 323, 966
BstNSI RCATGY 2 cut(s) 784, 850
BstSCI CCNGG 5 cut(s) 255, 275, 321, 465, 964
BstSFI CTRYAG 3 cut(s) 807, 885, 1196
BstSLI GKGCMC 1 cut(s) 309
BstSNI TACGTA 1 cut(s) 507
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 7 cut(s) 644, 862, 871, 1007, 1018, 1038, 1130
BstV2I GAAGAC 3 cut(s) 102, 215, 319
BstX2I RGATCY 3 cut(s) 1256, 1486, 1543
BstYI RGATCY 3 cut(s) 1256, 1486, 1543
BstZ17I GTATAC 1 cut(s) 756
BsuRI GGCC 5 cut(s) 5, 307, 321, 365, 465
BtgZI GCGATG 2 cut(s) 25, 1533
BtsCI GGATG 2 cut(s) 868, 955
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 4 cut(s) 307, 351, 1017, 1507
Cac8I GCNNGC 2 cut(s) 309, 1516
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 5 cut(s) 305, 306, 319, 464, 1422
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 1370
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 5 cut(s) 205, 289, 781, 847, 1426
CviQI GTAC 1 cut(s) 1370
DdeI CTNAG 4 cut(s) 411, 990, 1130, 1380
DpnI GATC 5 cut(s) 293, 813, 1258, 1488, 1545
DpnII GATC 5 cut(s) 291, 811, 1256, 1486, 1543
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 3 cut(s) 89, 149, 894
EarI CTCTTC 3 cut(s) 89, 149, 894
EciI GGCGGA 2 cut(s) 49, 122
Eco105I TACGTA 1 cut(s) 507
Eco24I GRGCYC 3 cut(s) 282, 309, 747
Eco31I GGTCTC 1 cut(s) 1346
Eco47I GGWCC 1 cut(s) 1422
Eco57I CTGAAG 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 321, 964
EcoT38I GRGCYC 3 cut(s) 282, 309, 747
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 5 cut(s) 208, 292, 784, 850, 1429
FalI AAGNNNNNCTT 2 cut(s) 578, 610
FaqI GGGAC 2 cut(s) 677, 1435
FatI CATG 5 cut(s) 204, 288, 780, 846, 1425
FauI CCCGC 2 cut(s) 205, 316
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 2 cut(s) 239, 755
FokI GGATG 2 cut(s) 875, 962
FriOI GRGCYC 3 cut(s) 282, 309, 747
GlaI GCGC 1 cut(s) 219
GsuI CTGGAG 2 cut(s) 912, 1496
HaeIII GGCC 5 cut(s) 5, 307, 321, 365, 465
HapII CCGG 5 cut(s) 257, 276, 348, 467, 1260
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 5 cut(s) 208, 292, 784, 850, 1429
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 3 cut(s) 240, 1024, 1146
HindII GTYRAC 3 cut(s) 240, 1024, 1146
HinfI GANTC 6 cut(s) 236, 690, 803, 961, 1190, 1326
HpaII CCGG 5 cut(s) 257, 276, 348, 467, 1260
HphI GGTGA 5 cut(s) 451, 920, 1241, 1424, 1580
Hpy166II GTNNAC 6 cut(s) 240, 756, 1024, 1146, 1335, 1372
Hpy188I TCNGA 2 cut(s) 235, 531
Hpy188III TCNNGA 8 cut(s) 268, 410, 737, 797, 929, 938, 1490, 1616
Hpy8I GTNNAC 6 cut(s) 240, 756, 1024, 1146, 1335, 1372
Hpy99I CGWCG 3 cut(s) 106, 235, 265
HpyAV CCTTC 6 cut(s) 132, 400, 852, 1051, 1104, 1385
HpyCH4III ACNGT 3 cut(s) 265, 1021, 1154
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 9 cut(s) 434, 500, 725, 850, 887, 1006, 1118, 1212, 1237
HpyF10VI GCNNNNNNNGC 2 cut(s) 226, 850
HpyF3I CTNAG 4 cut(s) 411, 990, 1130, 1380
HpySE526I ACGT 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 5 cut(s) 208, 292, 784, 850, 1429
HspAI GCGC 1 cut(s) 218
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 5 cut(s) 291, 811, 1256, 1486, 1543
LmnI GCTCC 2 cut(s) 1477, 1598
Lsp1109I GCAGC 7 cut(s) 644, 862, 871, 1007, 1018, 1038, 1130
LweI GCATC 2 cut(s) 443, 487
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 2 cut(s) 439, 502
MalI GATC 5 cut(s) 293, 813, 1258, 1488, 1545
MboI GATC 5 cut(s) 291, 811, 1256, 1486, 1543
MboII GAAGA 9 cut(s) 76, 102, 105, 136, 220, 319, 436, 911, 1547
MfeI CAATTG 1 cut(s) 1162
MflI RGATCY 3 cut(s) 1256, 1486, 1543
MhlI GDGCHC 5 cut(s) 282, 309, 709, 747, 1603
MluCI AATT 5 cut(s) 283, 831, 1032, 1079, 1162
MlyI GAGTC 2 cut(s) 245, 699
MmeI TCCRAC 1 cut(s) 213
MseI TTAA 5 cut(s) 420, 522, 830, 1218, 1463
MslI CAYNNNNRTG 1 cut(s) 1320
MspA1I CMGCKG 2 cut(s) 853, 998
MspCI CTTAAG 1 cut(s) 419
MspI CCGG 5 cut(s) 257, 276, 348, 467, 1260
MspR9I CCNGG 5 cut(s) 257, 277, 323, 467, 966
MunI CAATTG 1 cut(s) 1162
Mva1269I GAATGC 1 cut(s) 1068
MvaI CCWGG 2 cut(s) 323, 966
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 226, 850
NciI CCSGG 3 cut(s) 257, 277, 467
NdeII GATC 5 cut(s) 291, 811, 1256, 1486, 1543
NlaIII CATG 5 cut(s) 208, 292, 784, 850, 1429
NlaIV GGNNCC 3 cut(s) 307, 924, 1423
NmeAIII GCCGAG 1 cut(s) 820
NmuCI GTSAC 1 cut(s) 439
NspI RCATGY 2 cut(s) 784, 850
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PctI GAATGC 1 cut(s) 1068
PfeI GAWTC 4 cut(s) 803, 961, 1190, 1326
PflFI GACNNNGTC 2 cut(s) 106, 244
PfoI TCCNGGA 1 cut(s) 964
PleI GAGTC 2 cut(s) 244, 698
PpsI GAGTC 2 cut(s) 244, 698
Ppu21I YACGTR 1 cut(s) 507
Psp6I CCWGG 2 cut(s) 321, 964
PspGI CCWGG 2 cut(s) 321, 964
PspN4I GGNNCC 3 cut(s) 307, 924, 1423
PspOMI GGGCCC 1 cut(s) 305
PspPI GGNCC 5 cut(s) 305, 306, 319, 464, 1422
PstI CTGCAG 1 cut(s) 889
PsuI RGATCY 3 cut(s) 1256, 1486, 1543
PsyI GACNNNGTC 2 cut(s) 106, 244
RsaI GTAC 1 cut(s) 1371
RsaNI GTAC 1 cut(s) 1370
RseI CAYNNNNRTG 1 cut(s) 1320
SalI GTCGAC 1 cut(s) 238
SaqAI TTAA 5 cut(s) 420, 522, 830, 1218, 1463
Sau3AI GATC 5 cut(s) 291, 811, 1256, 1486, 1543
Sau96I GGNCC 5 cut(s) 305, 306, 319, 464, 1422
SchI GAGTC 2 cut(s) 245, 699
ScrFI CCNGG 5 cut(s) 257, 277, 323, 467, 966
SduI GDGCHC 5 cut(s) 282, 309, 709, 747, 1603
SfaNI GCATC 2 cut(s) 443, 487
SfcI CTRYAG 3 cut(s) 807, 885, 1196
SinI GGWCC 1 cut(s) 1422
SmiMI CAYNNNNRTG 1 cut(s) 1320
SmlI CTYRAG 2 cut(s) 419, 797
SmoI CTYRAG 2 cut(s) 419, 797
SnaBI TACGTA 1 cut(s) 507
Sse9I AATT 5 cut(s) 283, 831, 1032, 1079, 1162
SspI AATATT 2 cut(s) 526, 1216
StyD4I CCNGG 5 cut(s) 255, 275, 321, 465, 964
TaaI ACNGT 3 cut(s) 265, 1021, 1154
TaiI ACGT 1 cut(s) 509
TaqI TCGA 4 cut(s) 15, 239, 381, 1347
TasI AATT 5 cut(s) 283, 831, 1032, 1079, 1162
TatI WGTACW 1 cut(s) 1369
TauI GCSGC 6 cut(s) 92, 203, 218, 223, 226, 229
TfiI GAWTC 4 cut(s) 803, 961, 1190, 1326
Tru1I TTAA 5 cut(s) 420, 522, 830, 1218, 1463
Tru9I TTAA 5 cut(s) 420, 522, 830, 1218, 1463
TscAI CASTG 4 cut(s) 307, 358, 1024, 1507
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 7 cut(s) 632, 850, 884, 995, 1006, 1051, 1118
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 5 cut(s) 221, 382, 966, 1001, 1392
TspRI CASTG 4 cut(s) 307, 358, 1024, 1507
Tth111I GACNNNGTC 2 cut(s) 106, 244
Vha464I CTTAAG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 1422
XapI RAATTY 1 cut(s) 1079
XceI RCATGY 2 cut(s) 784, 850
XmiI GTMKAC 2 cut(s) 239, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.