Prupe.3G095500_v2.0.a1

Leucine-rich repeat extensin-like protein 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0018341
Physical Location & Seq
Reverse (-)
7157318 .. 7161028
3711 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G095500.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1074 bp
ATGAAAGCAAACACAGCAATCATTGTGACTACTTTAGCTCTGCTACTGATCACTCAAACAATCACAGAAGCTCAGCACAATCCCACACACAAAGAAGTAGAAGAAGAAAAGAGATCAAGAAGCACTAGAAGCAGCAGCAGAAGCAGAAGCAGAAGTAGAAGTAGAAGAGGCAGCAGCCATGGAGGAAGAACAAGATCAAACTGTGATCCATTGTTTCAATACCTGTTTGGAACCTGCGGCCAATGGCCCTTTCCTATAAACCCTTCCCCAAGCAACCCTTTTGACCCAACACCTCGACCCTCTCCTCGACCGCCACAAATGATACAACCACCCACCCTTCCATGGCTCACACCTCCCCCATTAGTACCTACACCAGAGCAACCAGCCTTTGATCTTCCTCCACCTACACCAGACTTACCACCACCTGATGAAGACTCTTCTCCATCACCCCCACTTGTCCCAATATTTACATCACCGCCACTGCCTTTTGAGCCTCCTCCATTTCCATTTGCACCACCAATTATATCATCCCCAACTGCACCAGACCCTGGTGTGATTGATCAGCCACCATCTTTGCCCATTCCTCAGTCACCAGAAATCTTTCTTCCACCTCCAATTCCTGAAGTGCCCCAAAATCCACAGGGGCCATTTCCATTTGTACCACCAATTATATCAACCCCAACTGCACCAGACCCTGGTGTGATTGATCAGCCACCATCTTTGCCCATTCCTCAGTCACCAGAAATCTTTCTTCCACCTCCAATTCCTGAAATGCCCCAAAATCCACGGGGGCCATTTCCATTTGTACCACCAATTATATCAACCCCAACTGCACCAGACCCTGGTGTGATTGATCAGCCACCATCTTTGCCCATTCCTCAGTCACCAGAAATCTTTCTGCCACCTCCAATTCCTGAAGTACCCCAAAATCCACAGGAGTCATTTCCATTTGGGTCCGCGCCACCAGCTCCAGATATGGATTTCATTGAGCCATTGTCACCCCCAGAAATCCCTTTTCTGCCTCCTGTTGATCAGCTTCCACGGGCGTTTGATTCACCTCCCTCTTATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

358

Amino Acids

38.66

Weight (kDa)

4.51

Isoelectric Point (pI)

109.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018341)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03660
prunus_persica Prupe.3G095500_v2.0.a1
rosa_laevigata RLG00000019345
rosa_multiflora Rmu_sc0017323.1_g000006
rosa_roxburghii Rroxscaffold_2G00111030
rosa_rugosa Rorug02G0312300
rosa_samantha Rh2AG365100 Rh2CG348400 Rh2DG387600
rosa_wichuraiana Rw2G029750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
AccB7I CCANNNNNTGG 3 cut(s) 548, 695, 842
AccII CGCG 1 cut(s) 959
AciI CCGC 4 cut(s) 237, 311, 476, 957
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 642, 936
AfaI GTAC 4 cut(s) 366, 660, 807, 921
AfiI CCNNNNNNNGG 4 cut(s) 342, 548, 695, 842
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 3 cut(s) 547, 694, 841
AjuI GAANNNNNNNTTGG 2 cut(s) 234, 266
AluBI AGCT 4 cut(s) 38, 71, 968, 1036
AluI AGCT 4 cut(s) 38, 71, 968, 1036
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 3 cut(s) 548, 695, 842
AoxI GGCC 4 cut(s) 238, 245, 644, 791
ApeKI GCWGC 4 cut(s) 132, 135, 171, 174
Asp700I GAANNNNTTC 3 cut(s) 600, 747, 894
AspLEI GCGC 1 cut(s) 961
AspS9I GGNCC 4 cut(s) 246, 644, 791, 954
AsuHPI GGTGA 7 cut(s) 438, 465, 582, 729, 876, 990, 1047
AvaII GGWCC 1 cut(s) 954
BaeGI GKGCMC 1 cut(s) 630
BbsI GAAGAC 1 cut(s) 438
BbvI GCAGC 4 cut(s) 144, 147, 183, 186
BccI CCATC 4 cut(s) 451, 577, 724, 871
BciT130I CCWGG 3 cut(s) 549, 696, 843
BclI TGATCA 5 cut(s) 48, 559, 706, 853, 1030
BfaI CTAG 1 cut(s) 126
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 5 cut(s) 133, 136, 172, 175, 238
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 5 cut(s) 134, 137, 173, 176, 239
Bme1390I CCNGG 3 cut(s) 549, 696, 843
Bme18I GGWCC 1 cut(s) 954
BmgT120I GGNCC 4 cut(s) 246, 644, 791, 954
BmiI GGNNCC 4 cut(s) 232, 645, 792, 955
BmrFI CCNGG 3 cut(s) 549, 696, 843
BpiI GAAGAC 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 954
Bpu1102I GCTNAGC 1 cut(s) 72
BsaJI CCNNGG 7 cut(s) 178, 341, 547, 694, 785, 841, 1040
Bsc4I CCNNNNNNNGG 4 cut(s) 342, 548, 695, 842
BseBI CCWGG 3 cut(s) 549, 696, 843
BseDI CCNNGG 7 cut(s) 178, 341, 547, 694, 785, 841, 1040
BseGI GGATG 1 cut(s) 527
BseLI CCNNNNNNNGG 4 cut(s) 342, 548, 695, 842
BseMII CTCAG 4 cut(s) 86, 599, 746, 893
BseRI GAGGAG 2 cut(s) 294, 486
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 4 cut(s) 144, 147, 183, 186
BsgI GTGCAG 3 cut(s) 522, 669, 816
Bsh1236I CGCG 1 cut(s) 959
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 4 cut(s) 240, 247, 646, 793
BsiEI CGRYCG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 4 cut(s) 342, 548, 695, 842
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 4 cut(s) 240, 247, 646, 793
Bsp1286I GDGCHC 1 cut(s) 630
Bsp143I GATC 9 cut(s) 48, 113, 194, 205, 391, 559, 706, 853, 1030
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 2 cut(s) 178, 341
BspACI CCGC 4 cut(s) 237, 311, 476, 957
BspANI GGCC 4 cut(s) 240, 247, 646, 793
BspCNI CTCAG 4 cut(s) 85, 598, 745, 892
BspFNI CGCG 1 cut(s) 959
BspLI GGNNCC 4 cut(s) 232, 645, 792, 955
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 1 cut(s) 200
BssECI CCNNGG 7 cut(s) 178, 341, 547, 694, 785, 841, 1040
BssMI GATC 9 cut(s) 48, 113, 194, 205, 391, 559, 706, 853, 1030
BssT1I CCWWGG 2 cut(s) 178, 341
Bst2UI CCWGG 3 cut(s) 549, 696, 843
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 2 cut(s) 160, 442
BstDEI CTNAG 4 cut(s) 72, 585, 732, 879
BstDSI CCRYGG 4 cut(s) 178, 341, 785, 1040
BstF5I GGATG 1 cut(s) 527
BstFNI CGCG 1 cut(s) 959
BstHHI GCGC 1 cut(s) 961
BstKTI GATC 9 cut(s) 51, 116, 197, 208, 394, 562, 709, 856, 1033
BstMBI GATC 9 cut(s) 48, 113, 194, 205, 391, 559, 706, 853, 1030
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 5 cut(s) 14, 129, 141, 490, 965
BstNI CCWGG 3 cut(s) 549, 696, 843
BstSCI CCNGG 3 cut(s) 547, 694, 841
BstSLI GKGCMC 1 cut(s) 630
BstUI CGCG 1 cut(s) 959
BstV1I GCAGC 4 cut(s) 144, 147, 183, 186
BstV2I GAAGAC 1 cut(s) 438
BsuRI GGCC 4 cut(s) 240, 247, 646, 793
BtgI CCRYGG 4 cut(s) 178, 341, 785, 1040
BtsCI GGATG 1 cut(s) 527
BtsI GCAGTG 1 cut(s) 479
BtsIMutI CAGTG 1 cut(s) 479
BveI ACCTGC 1 cut(s) 242
CaiI CAGNNNCTG 3 cut(s) 548, 695, 842
CfoI GCGC 1 cut(s) 961
Cfr13I GGNCC 4 cut(s) 246, 644, 791, 954
Csp6I GTAC 4 cut(s) 365, 659, 806, 920
CspCI CAANNNNNGTGG 6 cut(s) 555, 590, 702, 737, 849, 884
CviAII CATG 2 cut(s) 179, 342
CviQI GTAC 4 cut(s) 365, 659, 806, 920
DdeI CTNAG 4 cut(s) 72, 585, 732, 879
DpnI GATC 9 cut(s) 50, 115, 196, 207, 393, 561, 708, 855, 1032
DpnII GATC 9 cut(s) 48, 113, 194, 205, 391, 559, 706, 853, 1030
EaeI YGGCCR 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 160, 442
EarI CTCTTC 2 cut(s) 160, 442
Eco130I CCWWGG 2 cut(s) 178, 341
Eco47I GGWCC 1 cut(s) 954
Eco57I CTGAAG 2 cut(s) 642, 936
EcoRII CCWGG 3 cut(s) 547, 694, 841
EcoT14I CCWWGG 2 cut(s) 178, 341
ErhI CCWWGG 2 cut(s) 178, 341
FaeI CATG 2 cut(s) 182, 345
FaiI YATR 8 cut(s) 180, 257, 343, 524, 671, 818, 977, 1068
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FaqI GGGAC 1 cut(s) 443
FatI CATG 2 cut(s) 178, 341
FbaI TGATCA 5 cut(s) 48, 559, 706, 853, 1030
Fnu4HI GCNGC 5 cut(s) 133, 136, 172, 175, 238
FokI GGATG 1 cut(s) 514
Fsp4HI GCNGC 5 cut(s) 133, 136, 172, 175, 238
FspBI CTAG 1 cut(s) 126
GlaI GCGC 1 cut(s) 960
GluI GCNGC 5 cut(s) 133, 136, 172, 175, 238
GsuI CTGGAG 1 cut(s) 954
HaeIII GGCC 4 cut(s) 240, 247, 646, 793
HhaI GCGC 1 cut(s) 961
Hin1II CATG 2 cut(s) 182, 345
Hin6I GCGC 1 cut(s) 959
HinP1I GCGC 1 cut(s) 959
HinfI GANTC 3 cut(s) 434, 938, 1052
HphI GGTGA 7 cut(s) 438, 465, 582, 729, 876, 990, 1047
Hpy188III TCNNGA 5 cut(s) 117, 620, 767, 914, 971
HpyAV CCTTC 2 cut(s) 273, 347
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 512, 539, 686, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 129, 141, 490, 965
HpyF3I CTNAG 4 cut(s) 72, 585, 732, 879
Hsp92II CATG 2 cut(s) 182, 345
HspAI GCGC 1 cut(s) 959
Ksp22I TGATCA 5 cut(s) 48, 559, 706, 853, 1030
Kzo9I GATC 9 cut(s) 48, 113, 194, 205, 391, 559, 706, 853, 1030
LmnI GCTCC 1 cut(s) 973
Lsp1109I GCAGC 4 cut(s) 144, 147, 183, 186
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 5 cut(s) 25, 588, 735, 882, 996
MalI GATC 9 cut(s) 50, 115, 196, 207, 393, 561, 708, 855, 1032
MboI GATC 9 cut(s) 48, 113, 194, 205, 391, 559, 706, 853, 1030
MboII GAAGA 9 cut(s) 113, 116, 177, 198, 386, 429, 443, 596, 743
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 6 cut(s) 519, 615, 666, 762, 813, 909
MlyI GAGTC 2 cut(s) 428, 947
MroXI GAANNNNTTC 3 cut(s) 600, 747, 894
MseI TTAA 1 cut(s) 1072
MspR9I CCNGG 3 cut(s) 549, 696, 843
MvaI CCWGG 3 cut(s) 549, 696, 843
MvnI CGCG 1 cut(s) 959
MwoI GCNNNNNNNGC 5 cut(s) 14, 129, 141, 490, 965
NcoI CCATGG 2 cut(s) 178, 341
NdeII GATC 9 cut(s) 48, 113, 194, 205, 391, 559, 706, 853, 1030
NlaIII CATG 2 cut(s) 182, 345
NlaIV GGNNCC 4 cut(s) 232, 645, 792, 955
NmuCI GTSAC 5 cut(s) 25, 588, 735, 882, 996
PdmI GAANNNNTTC 3 cut(s) 600, 747, 894
PfeI GAWTC 1 cut(s) 1052
PflMI CCANNNNNTGG 3 cut(s) 548, 695, 842
PkrI GCNGC 5 cut(s) 134, 137, 173, 176, 239
PleI GAGTC 2 cut(s) 428, 946
PpsI GAGTC 2 cut(s) 428, 946
Psp6I CCWGG 3 cut(s) 547, 694, 841
PspGI CCWGG 3 cut(s) 547, 694, 841
PspN4I GGNNCC 4 cut(s) 232, 645, 792, 955
PspPI GGNCC 4 cut(s) 246, 644, 791, 954
PstNI CAGNNNCTG 3 cut(s) 548, 695, 842
RsaI GTAC 4 cut(s) 366, 660, 807, 921
RsaNI GTAC 4 cut(s) 365, 659, 806, 920
SaqAI TTAA 1 cut(s) 1072
SatI GCNGC 5 cut(s) 133, 136, 172, 175, 238
Sau3AI GATC 9 cut(s) 48, 113, 194, 205, 391, 559, 706, 853, 1030
Sau96I GGNCC 4 cut(s) 246, 644, 791, 954
SchI GAGTC 2 cut(s) 428, 947
ScrFI CCNGG 3 cut(s) 549, 696, 843
SduI GDGCHC 1 cut(s) 630
SinI GGWCC 1 cut(s) 954
Sse9I AATT 6 cut(s) 519, 615, 666, 762, 813, 909
SsiI CCGC 4 cut(s) 237, 311, 476, 957
SspI AATATT 1 cut(s) 465
SspMI CTAG 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 547, 694, 841
StyI CCWWGG 2 cut(s) 178, 341
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 2 cut(s) 295, 307
TasI AATT 6 cut(s) 519, 615, 666, 762, 813, 909
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 1 cut(s) 1072
Tru9I TTAA 1 cut(s) 1072
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 5 cut(s) 25, 588, 735, 882, 996
TseI GCWGC 4 cut(s) 132, 135, 171, 174
Tsp45I GTSAC 5 cut(s) 25, 588, 735, 882, 996
TspDTI ATGAA 3 cut(s) 17, 444, 973
TspRI CASTG 1 cut(s) 486
Van91I CCANNNNNTGG 3 cut(s) 548, 695, 842
VpaK11BI GGWCC 1 cut(s) 954
XmnI GAANNNNTTC 3 cut(s) 600, 747, 894
XspI CTAG 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.