DNA-directed RNA polymerases I, II, and III subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G04630 AT5G51940 |
| fragaria_vesca | FvH4_2g14180 |
| malus_domestica | MD09G1242800.v1.1 MD12G1011200.v1.1 MD17G1234800.v1.1 |
| prunus_persica | Prupe.3G134400_v2.0.a1 Prupe.7G013200_v2.0.a1 |
| pyrus_communis | pycom09g16110 pycom12g00870 pycom17g23820 |
| rosa_chinensis | RchiOBHm_Chr6g0276321 |
| rosa_laevigata | RLG00000013404 |
| rosa_multiflora | Rmu_sc0003665.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00192390 |
| rosa_rugosa | Rorug06G0099900 Rorug06G0100000 |
| rosa_samantha | Rh6DG207900 |
| rosa_wichuraiana | Rw6G018430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 409 |
| Acc36I | ACCTGC | 1 cut(s) | 409 |
| Acc65I | GGTACC | 3 cut(s) | 224, 328, 348 |
| AccB1I | GGYRCC | 3 cut(s) | 224, 328, 348 |
| AccBSI | CCGCTC | 1 cut(s) | 322 |
| AciI | CCGC | 2 cut(s) | 5, 322 |
| AclWI | GGATC | 1 cut(s) | 281 |
| AcsI | RAATTY | 1 cut(s) | 188 |
| AfaI | GTAC | 3 cut(s) | 226, 330, 350 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 168, 345 |
| AgsI | TTSAA | 2 cut(s) | 68, 134 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AluBI | AGCT | 2 cut(s) | 137, 313 |
| AluI | AGCT | 2 cut(s) | 137, 313 |
| Alw26I | GTCTC | 1 cut(s) | 275 |
| AlwI | GGATC | 1 cut(s) | 281 |
| AoxI | GGCC | 2 cut(s) | 170, 210 |
| ApoI | RAATTY | 1 cut(s) | 188 |
| Asp718I | GGTACC | 3 cut(s) | 224, 328, 348 |
| AspLEI | GCGC | 1 cut(s) | 256 |
| AspS9I | GGNCC | 1 cut(s) | 210 |
| AsuHPI | GGTGA | 2 cut(s) | 290, 328 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 332, 365 |
| BanI | GGYRCC | 3 cut(s) | 224, 328, 348 |
| BauI | CACGAG | 1 cut(s) | 406 |
| BbsI | GAAGAC | 1 cut(s) | 408 |
| BccI | CCATC | 2 cut(s) | 256, 353 |
| BceAI | ACGGC | 2 cut(s) | 113, 185 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BcoDI | GTCTC | 1 cut(s) | 275 |
| BfuAI | ACCTGC | 1 cut(s) | 409 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| BmgT120I | GGNCC | 1 cut(s) | 210 |
| BmiI | GGNNCC | 4 cut(s) | 57, 226, 330, 350 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BpiI | GAAGAC | 1 cut(s) | 408 |
| BpuEI | CTTGAG | 1 cut(s) | 314 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 173 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 114, 144 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 168, 345 |
| Bse118I | RCCGGY | 1 cut(s) | 345 |
| Bse1I | ACTGG | 1 cut(s) | 50 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseDI | CCNNGG | 2 cut(s) | 162, 173 |
| BseGI | GGATG | 2 cut(s) | 49, 182 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 168, 345 |
| BseNI | ACTGG | 1 cut(s) | 50 |
| BseRI | GAGGAG | 1 cut(s) | 95 |
| BsgI | GTGCAG | 2 cut(s) | 96, 257 |
| BshFI | GGCC | 2 cut(s) | 172, 212 |
| BshNI | GGYRCC | 3 cut(s) | 224, 328, 348 |
| BsiSI | CCGG | 1 cut(s) | 346 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 168, 345 |
| BsmAI | GTCTC | 1 cut(s) | 275 |
| BsmI | GAATGC | 1 cut(s) | 256 |
| BsnI | GGCC | 2 cut(s) | 172, 212 |
| Bsp143I | GATC | 3 cut(s) | 112, 240, 286 |
| BspACI | CCGC | 2 cut(s) | 5, 322 |
| BspANI | GGCC | 2 cut(s) | 172, 212 |
| BspLI | GGNNCC | 4 cut(s) | 57, 226, 330, 350 |
| BspMI | ACCTGC | 1 cut(s) | 409 |
| BspPI | GGATC | 1 cut(s) | 281 |
| BspT107I | GGYRCC | 3 cut(s) | 224, 328, 348 |
| BsrBI | CCGCTC | 1 cut(s) | 322 |
| BsrFI | RCCGGY | 1 cut(s) | 345 |
| BsrI | ACTGG | 1 cut(s) | 50 |
| BssAI | RCCGGY | 1 cut(s) | 345 |
| BssECI | CCNNGG | 2 cut(s) | 162, 173 |
| BssMI | GATC | 3 cut(s) | 112, 240, 286 |
| BssSI | CACGAG | 1 cut(s) | 406 |
| Bst2BI | CACGAG | 1 cut(s) | 406 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| BstDSI | CCRYGG | 1 cut(s) | 162 |
| BstF5I | GGATG | 2 cut(s) | 49, 182 |
| BstHHI | GCGC | 1 cut(s) | 256 |
| BstKTI | GATC | 3 cut(s) | 115, 243, 289 |
| BstMAI | GTCTC | 1 cut(s) | 275 |
| BstMBI | GATC | 3 cut(s) | 112, 240, 286 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 55, 134, 319 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstV2I | GAAGAC | 1 cut(s) | 408 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 220 |
| BsuRI | GGCC | 2 cut(s) | 172, 212 |
| BtgI | CCRYGG | 1 cut(s) | 162 |
| BtsCI | GGATG | 2 cut(s) | 49, 182 |
| BtsIMutI | CAGTG | 1 cut(s) | 57 |
| BveI | ACCTGC | 1 cut(s) | 409 |
| CfoI | GCGC | 1 cut(s) | 256 |
| Cfr10I | RCCGGY | 1 cut(s) | 345 |
| Cfr13I | GGNCC | 1 cut(s) | 210 |
| Csp6I | GTAC | 3 cut(s) | 225, 329, 349 |
| CviAII | CATG | 1 cut(s) | 247 |
| CviJI | RGCY | 7 cut(s) | 49, 58, 128, 137, 172, 212, 313 |
| CviKI_1 | RGCY | 7 cut(s) | 49, 58, 128, 137, 172, 212, 313 |
| CviQI | GTAC | 3 cut(s) | 225, 329, 349 |
| DpnI | GATC | 3 cut(s) | 114, 242, 288 |
| DpnII | GATC | 3 cut(s) | 112, 240, 286 |
| EciI | GGCGGA | 1 cut(s) | 20 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| FaeI | CATG | 1 cut(s) | 250 |
| FaiI | YATR | 7 cut(s) | 32, 39, 194, 248, 305, 341, 369 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 317, 349 |
| FatI | CATG | 1 cut(s) | 246 |
| FokI | GGATG | 2 cut(s) | 56, 169 |
| GlaI | GCGC | 1 cut(s) | 255 |
| HaeIII | GGCC | 2 cut(s) | 172, 212 |
| HapII | CCGG | 1 cut(s) | 346 |
| HhaI | GCGC | 1 cut(s) | 256 |
| Hin1II | CATG | 1 cut(s) | 250 |
| Hin6I | GCGC | 1 cut(s) | 254 |
| HinP1I | GCGC | 1 cut(s) | 254 |
| HinfI | GANTC | 2 cut(s) | 216, 404 |
| HpaII | CCGG | 1 cut(s) | 346 |
| HphI | GGTGA | 2 cut(s) | 290, 328 |
| Hpy188I | TCNGA | 1 cut(s) | 177 |
| Hpy188III | TCNNGA | 1 cut(s) | 317 |
| Hpy99I | CGWCG | 1 cut(s) | 14 |
| HpyAV | CCTTC | 4 cut(s) | 65, 301, 319, 343 |
| HpyCH4V | TGCA | 3 cut(s) | 77, 238, 274 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 55, 134, 319 |
| Hsp92II | CATG | 1 cut(s) | 250 |
| HspAI | GCGC | 1 cut(s) | 254 |
| KpnI | GGTACC | 3 cut(s) | 228, 332, 352 |
| Kzo9I | GATC | 3 cut(s) | 112, 240, 286 |
| LmnI | GCTCC | 2 cut(s) | 55, 310 |
| MalI | GATC | 3 cut(s) | 114, 242, 288 |
| MbiI | CCGCTC | 1 cut(s) | 322 |
| MboI | GATC | 3 cut(s) | 112, 240, 286 |
| MboII | GAAGA | 6 cut(s) | 80, 98, 107, 161, 383, 413 |
| MfeI | CAATTG | 1 cut(s) | 430 |
| MluCI | AATT | 2 cut(s) | 188, 430 |
| MlyI | GAGTC | 1 cut(s) | 398 |
| MnlI | CCTC | 6 cut(s) | 34, 73, 76, 183, 362, 419 |
| MspI | CCGG | 1 cut(s) | 346 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| MunI | CAATTG | 1 cut(s) | 430 |
| Mva1269I | GAATGC | 1 cut(s) | 256 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 55, 134, 319 |
| NdeII | GATC | 3 cut(s) | 112, 240, 286 |
| NlaIII | CATG | 1 cut(s) | 250 |
| NlaIV | GGNNCC | 4 cut(s) | 57, 226, 330, 350 |
| PaqCI | CACCTGC | 1 cut(s) | 409 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 18 |
| PctI | GAATGC | 1 cut(s) | 256 |
| PfeI | GAWTC | 1 cut(s) | 216 |
| PfoI | TCCNGGA | 1 cut(s) | 118 |
| PleI | GAGTC | 1 cut(s) | 398 |
| PpsI | GAGTC | 1 cut(s) | 398 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 4 cut(s) | 57, 226, 330, 350 |
| PspPI | GGNCC | 1 cut(s) | 210 |
| RsaI | GTAC | 3 cut(s) | 226, 330, 350 |
| RsaNI | GTAC | 3 cut(s) | 225, 329, 349 |
| Sau3AI | GATC | 3 cut(s) | 112, 240, 286 |
| Sau96I | GGNCC | 1 cut(s) | 210 |
| SchI | GAGTC | 1 cut(s) | 398 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SetI | ASST | 6 cut(s) | 76, 139, 315, 330, 354, 423 |
| SmlI | CTYRAG | 1 cut(s) | 293 |
| SmoI | CTYRAG | 1 cut(s) | 293 |
| Sse9I | AATT | 2 cut(s) | 188, 430 |
| SsiI | CCGC | 2 cut(s) | 5, 322 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| TasI | AATT | 2 cut(s) | 188, 430 |
| TfiI | GAWTC | 1 cut(s) | 216 |
| TscAI | CASTG | 1 cut(s) | 57 |
| TspDTI | ATGAA | 3 cut(s) | 263, 320, 384 |
| TspRI | CASTG | 1 cut(s) | 57 |
| XapI | RAATTY | 1 cut(s) | 188 |