Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012428

Physical Location & Seq

Genomic Coordinates Reverse (-)

13283525 .. 13285314

Gene Structure 1790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0099900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGATTGCAAATGTTAAGAATTATTCTTTTGAATTGAGCAGTGGTCTGCTAAAGGAAATTGACTCTTCGCAGCTTGCAAACTATTTGAAAGATCTTGGAGTGAAAAAGGGTGATGCTTGTTGCGGTTTACTTACCCATGTTAATGGAACTTCCAATCACAATGCTTGCCTGTGCTTAAATTGGTGCTGTTCACTCGATGTATGCTTAACTTATGAGAAAGAATCTGCTTTGAAGAGGGAAGTACTAATTGGGAAGAAGGATGAGATATATGGTGGCAGGATGGCATACCTAAATATCCAACTACTTGTGCAGTGGAGTGGGTTGATGCAGAGGATCCACTTTTTGTGCTCTATATCAGTGGGAGCACTGGGAAGCCCTAGCGAGTTCTGCACACAACTGGGGATATATGGTGCAGCTGCTACAACATTTAAATATGCTTTTGATTACAAACCATCCGACATCTACTGGTACCCTTCACAACCAGAGGCTTATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb6

Protein Analysis

165

Amino Acids

18.39

Weight (kDa)

6.27

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04630 AT5G51940
fragaria_vesca	FvH4_2g14180
malus_domestica	MD09G1242800.v1.1 MD12G1011200.v1.1 MD17G1234800.v1.1
prunus_persica	Prupe.3G134400_v2.0.a1 Prupe.7G013200_v2.0.a1
pyrus_communis	pycom09g16110 pycom12g00870 pycom17g23820
rosa_chinensis	RchiOBHm_Chr6g0276321
rosa_laevigata	RLG00000013404
rosa_multiflora	Rmu_sc0003665.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192390
rosa_rugosa	Rorug06G0099900 Rorug06G0100000
rosa_samantha	Rh6DG207900
rosa_wichuraiana	Rw6G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	1 cut(s)	468
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	2 cut(s)	328, 341
AfaI	GTAC	2 cut(s)	243, 470
AgsI	TTSAA	3 cut(s)	32, 88, 232
AjuI	GAANNNNNNNTTGG	2 cut(s)	231, 263
AluBI	AGCT	2 cut(s)	73, 416
AluI	AGCT	2 cut(s)	73, 416
Alw21I	GWGCWC	2 cut(s)	350, 367
AlwI	GGATC	2 cut(s)	328, 341
ApeKI	GCWGC	3 cut(s)	70, 413, 416
Asp718I	GGTACC	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	333
BanI	GGYRCC	1 cut(s)	468
Bbv12I	GWGCWC	2 cut(s)	350, 367
BbvI	GCAGC	3 cut(s)	82, 403, 425
BccI	CCATC	2 cut(s)	274, 460
BfaI	CTAG	1 cut(s)	378
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	3 cut(s)	71, 414, 417
BlsI	GCNGC	3 cut(s)	72, 415, 418
BmcAI	AGTACT	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	335, 470
BmrI	ACTGGG	2 cut(s)	377, 407
BmsI	GCATC	2 cut(s)	103, 315
BmuI	ACTGGG	2 cut(s)	377, 407
Bse1I	ACTGG	3 cut(s)	372, 402, 470
BseGI	GGATG	3 cut(s)	265, 285, 452
BseNI	ACTGG	3 cut(s)	372, 402, 470
BseXI	GCAGC	3 cut(s)	82, 403, 425
BsgI	GTGCAG	3 cut(s)	329, 373, 432
BshNI	GGYRCC	1 cut(s)	468
BsiHKAI	GWGCWC	2 cut(s)	350, 367
Bsp1286I	GDGCHC	2 cut(s)	350, 367
Bsp143I	GATC	2 cut(s)	91, 333
BspACI	CCGC	1 cut(s)	123
BspLI	GGNNCC	2 cut(s)	335, 470
BspPI	GGATC	2 cut(s)	328, 341
BspT107I	GGYRCC	1 cut(s)	468
BsrI	ACTGG	3 cut(s)	372, 402, 470
BssMI	GATC	2 cut(s)	91, 333
Bst6I	CTCTTC	2 cut(s)	70, 227
BstC8I	GCNNGC	2 cut(s)	75, 166
BstF5I	GGATG	3 cut(s)	265, 285, 452
BstKTI	GATC	2 cut(s)	94, 336
BstMBI	GATC	2 cut(s)	91, 333
BstMWI	GCNNNNNNNGC	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	82, 403, 425
BstX2I	RGATCY	2 cut(s)	91, 333
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	91, 333
BtsCI	GGATG	3 cut(s)	265, 285, 452
BtsI	GCAGTG	2 cut(s)	46, 317
BtsIMutI	CAGTG	4 cut(s)	46, 317, 363, 365
Cac8I	GCNNGC	2 cut(s)	75, 166
Csp6I	GTAC	2 cut(s)	242, 469
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	4 cut(s)	73, 375, 416, 488
CviKI_1	RGCY	4 cut(s)	73, 375, 416, 488
CviQI	GTAC	2 cut(s)	242, 469
DpnI	GATC	2 cut(s)	93, 335
DpnII	GATC	2 cut(s)	91, 333
DraI	TTTAAA	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	70, 227
EarI	CTCTTC	2 cut(s)	70, 227
FaeI	CATG	1 cut(s)	140
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	71, 414, 417
FokI	GGATG	3 cut(s)	272, 292, 439
Fsp4HI	GCNGC	3 cut(s)	71, 414, 417
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	3 cut(s)	71, 414, 417
Hin1II	CATG	1 cut(s)	140
HinfI	GANTC	2 cut(s)	62, 221
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	2 cut(s)	128, 191
Hpy188I	TCNGA	1 cut(s)	457
Hpy8I	GTNNAC	2 cut(s)	128, 191
HpyAV	CCTTC	2 cut(s)	250, 483
HpyCH4V	TGCA	6 cut(s)	8, 77, 310, 328, 390, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	140
KpnI	GGTACC	1 cut(s)	472
Kzo9I	GATC	2 cut(s)	91, 333
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	5 cut(s)	182, 262, 353, 383, 451
Lsp1109I	GCAGC	3 cut(s)	82, 403, 425
LweI	GCATC	2 cut(s)	103, 315
MaeI	CTAG	1 cut(s)	378
MalI	GATC	2 cut(s)	93, 335
MboI	GATC	2 cut(s)	91, 333
MboII	GAAGA	3 cut(s)	57, 244, 265
MflI	RGATCY	2 cut(s)	91, 333
MhlI	GDGCHC	2 cut(s)	350, 367
MluCI	AATT	5 cut(s)	19, 32, 57, 178, 246
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	322, 480
MnlI	CCTC	3 cut(s)	228, 324, 478
MseI	TTAA	6 cut(s)	15, 141, 176, 206, 429, 496
MslI	CAYNNNNRTG	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	416
MwoI	GCNNNNNNNGC	1 cut(s)	387
NdeII	GATC	2 cut(s)	91, 333
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	2 cut(s)	335, 470
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	72, 415, 418
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspN4I	GGNNCC	2 cut(s)	335, 470
PsuI	RGATCY	2 cut(s)	91, 333
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	243, 470
RsaNI	GTAC	2 cut(s)	242, 469
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	6 cut(s)	15, 141, 176, 206, 429, 496
SatI	GCNGC	3 cut(s)	71, 414, 417
Sau3AI	GATC	2 cut(s)	91, 333
ScaI	AGTACT	1 cut(s)	243
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	350, 367
SetI	ASST	3 cut(s)	75, 291, 418
SfaNI	GCATC	2 cut(s)	103, 315
SmiI	ATTTAAAT	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	5 cut(s)	19, 32, 57, 178, 246
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	378
SwaI	ATTTAAAT	1 cut(s)	430
TaqI	TCGA	1 cut(s)	195
TasI	AATT	5 cut(s)	19, 32, 57, 178, 246
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	6 cut(s)	15, 141, 176, 206, 429, 496
Tru9I	TTAA	6 cut(s)	15, 141, 176, 206, 429, 496
TscAI	CASTG	4 cut(s)	46, 317, 363, 372
TseI	GCWGC	3 cut(s)	70, 413, 416
TspRI	CASTG	4 cut(s)	46, 317, 363, 372
XspI	CTAG	1 cut(s)	378
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.