Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012428

Physical Location & Seq

Genomic Coordinates Forward (+)

1883604 .. 1886635

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G013200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGGACGAGGATTACAACGACATGGATATGGGATATGAAGATGAGCCACCAGAGCCAGAAATTGAAGAAGGTGCAGAGGAGGATGTGGACAATATTAACAATGATGATCTTCCAGGAGACGCCATTGAAGCTGAAGACAAAGAGGAGCAAGCACAGGTGGAAGGACCTCGGAAAACCTCAAAATTTATGACCAAATATGAACGTGCTAGAATCTTGGGTACCCGGGCACTGCAGATTAGCATGAATGCCCCGGTGATGGTTGAATTGGAGGGTGAGACTGACCCACTTGAGATTGCTATGAAGGAGCTTCGTGAGCGGAAGATACCCTTCACCATACGCCGCTACCTGCCTGATGGAAGTTACGAAGACTGGGGAGTAGATGAATTGATTGTGGAAGACTCATGGAAGAGACAGGTGGGAGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb6

Protein Analysis

144

Amino Acids

16.42

Weight (kDa)

4.12

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04630 AT5G51940
fragaria_vesca	FvH4_2g14180
malus_domestica	MD09G1242800.v1.1 MD12G1011200.v1.1 MD17G1234800.v1.1
prunus_persica	Prupe.3G134400_v2.0.a1 Prupe.7G013200_v2.0.a1
pyrus_communis	pycom09g16110 pycom12g00870 pycom17g23820
rosa_chinensis	RchiOBHm_Chr6g0276321
rosa_laevigata	RLG00000013404
rosa_multiflora	Rmu_sc0003665.1_g000006
rosa_roxburghii	Rroxscaffold_7G00192390
rosa_rugosa	Rorug06G0099900 Rorug06G0100000
rosa_samantha	Rh6DG207900
rosa_wichuraiana	Rw6G018430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	357
Acc65I	GGTACC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	319
AciI	CCGC	3 cut(s)	5, 319, 343
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgsI	TTSAA	3 cut(s)	68, 131, 266
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	2 cut(s)	134, 310
AluI	AGCT	2 cut(s)	134, 310
Alw26I	GTCTC	3 cut(s)	114, 272, 406
Ama87I	CYCGRG	1 cut(s)	225
ApoI	RAATTY	1 cut(s)	185
Asp718I	GGTACC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	3 cut(s)	226, 227, 254
AsuHPI	GGTGA	3 cut(s)	268, 287, 325
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	167
BaeGI	GKGCMC	1 cut(s)	232
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	3 cut(s)	144, 375, 405
BccI	CCATC	2 cut(s)	253, 350
BciT130I	CCWGG	1 cut(s)	117
BcnI	CCSGG	3 cut(s)	226, 227, 254
BcoDI	GTCTC	3 cut(s)	114, 272, 406
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	233
BfuAI	ACCTGC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	343
BlsI	GCNGC	1 cut(s)	344
Bme1390I	CCNGG	4 cut(s)	117, 226, 227, 254
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	4 cut(s)	117, 226, 227, 254
BmrI	ACTGGG	1 cut(s)	382
BmuI	ACTGGG	1 cut(s)	382
BpiI	GAAGAC	3 cut(s)	144, 375, 405
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	3 cut(s)	226, 227, 254
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	170, 225, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	170, 225, 252
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseNI	ACTGG	1 cut(s)	377
BseRI	GAGGAG	2 cut(s)	95, 161
BseSI	GKGCMC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	96
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	2 cut(s)	226, 254
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	3 cut(s)	114, 272, 406
BsmBI	CGTCTC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	3 cut(s)	5, 319, 343
BspLI	GGNNCC	1 cut(s)	223
BspMAI	CTGCAG	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	377
BssECI	CCNNGG	3 cut(s)	170, 225, 252
BssMI	GATC	1 cut(s)	109
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	1 cut(s)	112
BstMAI	GTCTC	3 cut(s)	114, 272, 406
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 131, 316
BstNI	CCWGG	1 cut(s)	117
BstSCI	CCNGG	4 cut(s)	115, 224, 225, 252
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	232
BstV2I	GAAGAC	3 cut(s)	144, 375, 405
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	153
Cfr13I	GGNCC	1 cut(s)	167
Cfr9I	CCCGGG	1 cut(s)	225
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	25, 244, 405
CviJI	RGCY	4 cut(s)	49, 58, 134, 310
CviKI_1	RGCY	4 cut(s)	49, 58, 134, 310
CviQI	GTAC	1 cut(s)	222
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	114
FaeI	CATG	3 cut(s)	28, 247, 408
FaiI	YATR	9 cut(s)	26, 32, 39, 191, 201, 245, 302, 338, 406
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	3 cut(s)	24, 243, 404
Fnu4HI	GCNGC	1 cut(s)	343
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	343
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	343
HapII	CCGG	2 cut(s)	226, 254
HgaI	GACGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	28, 247, 408
HinfI	GANTC	2 cut(s)	213, 401
HpaII	CCGG	2 cut(s)	226, 254
HphI	GGTGA	3 cut(s)	268, 287, 325
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	314
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	4 cut(s)	65, 158, 298, 340
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	77, 235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 131, 316
HpySE526I	ACGT	1 cut(s)	205
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	28, 247, 408
KpnI	GGTACC	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	109
LmnI	GCTCC	2 cut(s)	148, 307
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	1 cut(s)	111
MbiI	CCGCTC	1 cut(s)	319
MboI	GATC	1 cut(s)	109
MboII	GAAGA	8 cut(s)	53, 80, 104, 149, 334, 380, 410, 421
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	4 cut(s)	63, 185, 266, 386
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	8 cut(s)	4, 73, 76, 139, 180, 190, 265, 416
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	2 cut(s)	226, 254
MspR9I	CCNGG	4 cut(s)	117, 226, 227, 254
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	55, 131, 316
NciI	CCSGG	3 cut(s)	226, 227, 254
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	3 cut(s)	28, 247, 408
NlaIV	GGNNCC	1 cut(s)	223
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	213
PfoI	TCCNGGA	1 cut(s)	115
PkrI	GCNGC	1 cut(s)	344
PleI	GAGTC	1 cut(s)	395
PpsI	GAGTC	1 cut(s)	395
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	167
PspPPI	RGGWCCY	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	237
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	1 cut(s)	343
Sau3AI	GATC	1 cut(s)	109
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	4 cut(s)	117, 226, 227, 254
SduI	GDGCHC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	167
SmaI	CCCGGG	1 cut(s)	227
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	4 cut(s)	63, 185, 266, 386
SsiI	CCGC	3 cut(s)	5, 319, 343
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	4 cut(s)	115, 224, 225, 252
TaiI	ACGT	1 cut(s)	208
TasI	AATT	4 cut(s)	63, 185, 266, 386
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	237
TspDTI	ATGAA	5 cut(s)	54, 216, 260, 317, 399
TspMI	CCCGGG	1 cut(s)	225
TspRI	CASTG	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	1 cut(s)	185
XmaI	CCCGGG	1 cut(s)	225
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.