DNA-directed RNA polymerases I, II, and III subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G04630 AT5G51940 |
| fragaria_vesca | FvH4_2g14180 |
| malus_domestica | MD09G1242800.v1.1 MD12G1011200.v1.1 MD17G1234800.v1.1 |
| prunus_persica | Prupe.3G134400_v2.0.a1 Prupe.7G013200_v2.0.a1 |
| pyrus_communis | pycom09g16110 pycom12g00870 pycom17g23820 |
| rosa_chinensis | RchiOBHm_Chr6g0276321 |
| rosa_laevigata | RLG00000013404 |
| rosa_multiflora | Rmu_sc0003665.1_g000006 |
| rosa_roxburghii | Rroxscaffold_7G00192390 |
| rosa_rugosa | Rorug06G0099900 Rorug06G0100000 |
| rosa_samantha | Rh6DG207900 |
| rosa_wichuraiana | Rw6G018430 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 217 |
| Acc36I | ACCTGC | 2 cut(s) | 168, 217 |
| AccB1I | GGYRCC | 1 cut(s) | 136 |
| AccBSI | CCGCTC | 1 cut(s) | 130 |
| AciI | CCGC | 2 cut(s) | 130, 154 |
| AfaI | GTAC | 1 cut(s) | 34 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 70 |
| AluBI | AGCT | 1 cut(s) | 121 |
| AluI | AGCT | 1 cut(s) | 121 |
| Alw26I | GTCTC | 1 cut(s) | 83 |
| AsuHPI | GGTGA | 1 cut(s) | 136 |
| BaeGI | GKGCMC | 1 cut(s) | 141 |
| BanI | GGYRCC | 1 cut(s) | 136 |
| BauI | CACGAG | 2 cut(s) | 36, 214 |
| BbsI | GAAGAC | 1 cut(s) | 216 |
| BccI | CCATC | 2 cut(s) | 64, 161 |
| BcoDI | GTCTC | 1 cut(s) | 83 |
| BfaI | CTAG | 1 cut(s) | 21 |
| BfuAI | ACCTGC | 2 cut(s) | 168, 217 |
| BisI | GCNGC | 1 cut(s) | 154 |
| BlsI | GCNGC | 1 cut(s) | 155 |
| BmiI | GGNNCC | 1 cut(s) | 138 |
| BpiI | GAAGAC | 1 cut(s) | 216 |
| BpuEI | CTTGAG | 1 cut(s) | 122 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 70 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 70 |
| BseSI | GKGCMC | 1 cut(s) | 141 |
| BsgI | GTGCAG | 1 cut(s) | 65 |
| BshNI | GGYRCC | 1 cut(s) | 136 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 70 |
| BsmAI | GTCTC | 1 cut(s) | 83 |
| BsmI | GAATGC | 1 cut(s) | 64 |
| Bsp1286I | GDGCHC | 1 cut(s) | 141 |
| Bsp143I | GATC | 1 cut(s) | 48 |
| BspACI | CCGC | 2 cut(s) | 130, 154 |
| BspLI | GGNNCC | 1 cut(s) | 138 |
| BspMI | ACCTGC | 2 cut(s) | 168, 217 |
| BspT107I | GGYRCC | 1 cut(s) | 136 |
| BsrBI | CCGCTC | 1 cut(s) | 130 |
| BssMI | GATC | 1 cut(s) | 48 |
| BssSI | CACGAG | 2 cut(s) | 36, 214 |
| Bst2BI | CACGAG | 2 cut(s) | 36, 214 |
| Bst6I | CTCTTC | 1 cut(s) | 215 |
| BstKTI | GATC | 1 cut(s) | 51 |
| BstMAI | GTCTC | 1 cut(s) | 83 |
| BstMBI | GATC | 1 cut(s) | 48 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 127, 136 |
| BstSLI | GKGCMC | 1 cut(s) | 141 |
| BstV2I | GAAGAC | 1 cut(s) | 216 |
| BveI | ACCTGC | 2 cut(s) | 168, 217 |
| Csp6I | GTAC | 1 cut(s) | 33 |
| CviAII | CATG | 1 cut(s) | 55 |
| CviJI | RGCY | 1 cut(s) | 121 |
| CviKI_1 | RGCY | 1 cut(s) | 121 |
| CviQI | GTAC | 1 cut(s) | 33 |
| DpnI | GATC | 1 cut(s) | 50 |
| DpnII | GATC | 1 cut(s) | 48 |
| Eam1104I | CTCTTC | 1 cut(s) | 215 |
| EarI | CTCTTC | 1 cut(s) | 215 |
| FaeI | CATG | 1 cut(s) | 58 |
| FaiI | YATR | 3 cut(s) | 12, 56, 113 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 125, 157 |
| FatI | CATG | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 1 cut(s) | 154 |
| Fsp4HI | GCNGC | 1 cut(s) | 154 |
| FspBI | CTAG | 1 cut(s) | 21 |
| GluI | GCNGC | 1 cut(s) | 154 |
| Hin1II | CATG | 1 cut(s) | 58 |
| HinfI | GANTC | 1 cut(s) | 212 |
| HphI | GGTGA | 1 cut(s) | 136 |
| Hpy188III | TCNNGA | 1 cut(s) | 125 |
| HpyAV | CCTTC | 3 cut(s) | 109, 127, 151 |
| HpyCH4IV | ACGT | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 2 cut(s) | 46, 82 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 127, 136 |
| HpySE526I | ACGT | 1 cut(s) | 16 |
| Hsp92II | CATG | 1 cut(s) | 58 |
| Kzo9I | GATC | 1 cut(s) | 48 |
| LmnI | GCTCC | 1 cut(s) | 118 |
| LpnPI | CCDG | 5 cut(s) | 68, 78, 173, 177, 212 |
| MaeI | CTAG | 1 cut(s) | 21 |
| MaeII | ACGT | 1 cut(s) | 16 |
| MaeIII | GTNAC | 1 cut(s) | 173 |
| MalI | GATC | 1 cut(s) | 50 |
| MbiI | CCGCTC | 1 cut(s) | 130 |
| MboI | GATC | 1 cut(s) | 48 |
| MboII | GAAGA | 3 cut(s) | 191, 221, 232 |
| MhlI | GDGCHC | 1 cut(s) | 141 |
| MlyI | GAGTC | 1 cut(s) | 206 |
| MnlI | CCTC | 2 cut(s) | 216, 227 |
| Mva1269I | GAATGC | 1 cut(s) | 64 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 127, 136 |
| NdeII | GATC | 1 cut(s) | 48 |
| NlaIII | CATG | 1 cut(s) | 58 |
| NlaIV | GGNNCC | 1 cut(s) | 138 |
| PaqCI | CACCTGC | 1 cut(s) | 217 |
| PctI | GAATGC | 1 cut(s) | 64 |
| PkrI | GCNGC | 1 cut(s) | 155 |
| PleI | GAGTC | 1 cut(s) | 206 |
| PpsI | GAGTC | 1 cut(s) | 206 |
| PspN4I | GGNNCC | 1 cut(s) | 138 |
| RsaI | GTAC | 1 cut(s) | 34 |
| RsaNI | GTAC | 1 cut(s) | 33 |
| SatI | GCNGC | 1 cut(s) | 154 |
| Sau3AI | GATC | 1 cut(s) | 48 |
| SchI | GAGTC | 1 cut(s) | 206 |
| SduI | GDGCHC | 1 cut(s) | 141 |
| SetI | ASST | 6 cut(s) | 19, 123, 138, 162, 231, 238 |
| SmlI | CTYRAG | 1 cut(s) | 101 |
| SmoI | CTYRAG | 1 cut(s) | 101 |
| SsiI | CCGC | 2 cut(s) | 130, 154 |
| SspI | AATATT | 1 cut(s) | 27 |
| SspMI | CTAG | 1 cut(s) | 21 |
| TaiI | ACGT | 1 cut(s) | 19 |
| TauI | GCSGC | 1 cut(s) | 156 |
| TspDTI | ATGAA | 3 cut(s) | 27, 71, 128 |
| XspI | CTAG | 1 cut(s) | 21 |