Prupe.3G164600_v2.0.a1

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017593
Physical Location & Seq
Forward (+)
18359916 .. 18361106
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G164600.1

Sequence Viewer

Length: 1191 bp
ATGGCCTCGGATTCCCCACTTCAATCCAAGTCTCCCTACACCTCAAATATCTTCTTCCTTTTTCTTCTCCTTTCAACAAATCTCCTTACTTTGTTCTTTTCCTCTTCCTTTTCCATCTGCTCTCTCAAATCTCTCTCCACCGCAGCAACCACCGCCGACCTTGCAACCCCAACGGGATTAAACCTCCCGGAGGCCCCTACAGAAGACACATCCGATCTCCCGCCGGAATTCCTTGCCTTTGCATCCGGACAACTCCTCCCATTTGGCTACAACATCAACTTTGACTCCAACACCATTTACCCTGCAGTTGGTCAAGCTTGCACACTCTTCCCCGATCTCCTCAGCCGCTTCATGTCCTACAAAGTCAATGGGTCGTGTCCGGATGACGAGTTTTTAGCCCAAAGGCTCCTCCTCAAGGGCTGTGAGCCCTTACCCCGCCGCCGCTGCCGCCCCGCCTCAAATGCTAACTATGTGGAACCCTATCCTCTTCCCAAAAGCTTCTGGTCCACACCATCCGACTCCTCAGTCGTATGGACAGCTTACAAATGCAAAAACTACAACTGCCTCGTCAACAGAAAGAAAAACCATAAGGGTTTTGACGACTGCATAGACTGCTTTGACCTCCAAGGAAATGAGAAGACTCGGTGGGGAAAAGGCAAAGGAGGAGGGCTAGACTTCGGTGTGGATGAAGTCTTGGGGTTCAAGAAACCCGGGACGATACGAATCGGGCTGGACATTGGCGGCGGAGTGGCCACATTCGCTGTGAGAATGAGGGAAAGGAACGTCACAATTGTGACAACTTCAATGAACTTGAACGGTCCTTTTAACAGCTTCATAGCTTCAAGAGGGGTTGTGCCTTTGTACATAAGCATTTCACAGAGACTGCCTTTTTTCGATAACACTTTGGATATTGTGCATTCAATGCACGTTTTGAGTAATTGGATACCAACGACGTTGCTTCATTTTGCGGTGTTTGATATCTACAGAATCCTTAGGCCTGGGGGGTTGTTTTGGCTTGACCATTTTTTCTGTGTAGGTGAGCAGATGGAAGAGGTCTATGGACCGCTCATTGAGAGCGTTGGGTTCAAGAAGTTGAAGTGGGTTGTTGGGAGGAAGCTTGATCGTGGGCCGGAGCGACGGGAGATGTACCTTTCGGCTTTGCTGGAGAAGCCATTGAAGAATTCTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_29

Protein Analysis

397

Amino Acids

44.31

Weight (kDa)

8.44

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017593)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29960
malus_domestica MD17G1262900.v1.1
prunus_persica Prupe.3G164600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0492371
rosa_laevigata RLG00000022779
rosa_multiflora Rmu_sc0003156.1_g000020
rosa_roxburghii Rroxscaffold_6G00392380
rosa_samantha Rh3AG303400 Rh3BG339600 Rh3CG336600 Rh3DG338700
rosa_wichuraiana Rw3G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 524
AccBSI CCGCTC 1 cut(s) 1066
AccIII TCCGGA 2 cut(s) 245, 379
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 2 cut(s) 227, 1180
AfaI GTAC 2 cut(s) 863, 1148
AfiI CCNNNNNNNGG 3 cut(s) 190, 308, 415
AjnI CCWGG 1 cut(s) 997
AleI CACNNNNGTG 1 cut(s) 791
AluBI AGCT 6 cut(s) 317, 498, 539, 831, 839, 1117
AluI AGCT 6 cut(s) 317, 498, 539, 831, 839, 1117
Alw26I GTCTC 2 cut(s) 36, 874
AlwNI CAGNNNCTG 1 cut(s) 883
Ama87I CYCGRG 1 cut(s) 710
Aor13HI TCCGGA 2 cut(s) 245, 379
AoxI GGCC 5 cut(s) 3, 192, 750, 995, 1127
ApeKI GCWGC 2 cut(s) 143, 444
ApoI RAATTY 2 cut(s) 227, 1180
AspS9I GGNCC 5 cut(s) 193, 504, 818, 1061, 1127
AsuC2I CCSGG 3 cut(s) 188, 711, 712
AsuHPI GGTGA 1 cut(s) 1049
AvaI CYCGRG 1 cut(s) 710
AvaII GGWCC 3 cut(s) 504, 818, 1061
AxyI CCTNAGG 1 cut(s) 992
BalI TGGCCA 1 cut(s) 752
BanII GRGCYC 1 cut(s) 429
BbsI GAAGAC 2 cut(s) 210, 644
BbvCI CCTCAGC 1 cut(s) 341
BbvI GCAGC 2 cut(s) 155, 431
BccI CCATC 3 cut(s) 122, 520, 1039
BciT130I CCWGG 1 cut(s) 999
BciVI GTATCC 1 cut(s) 936
BcnI CCSGG 3 cut(s) 188, 711, 712
BcoDI GTCTC 2 cut(s) 36, 874
BfaI CTAG 1 cut(s) 671
BfmI CTRYAG 3 cut(s) 198, 303, 982
BfuI GTATCC 1 cut(s) 936
BisI GCNGC 7 cut(s) 144, 346, 439, 442, 445, 448, 742
BlsI GCNGC 7 cut(s) 145, 347, 440, 443, 446, 449, 743
Bme1390I CCNGG 4 cut(s) 188, 711, 712, 999
Bme18I GGWCC 3 cut(s) 504, 818, 1061
BmeT110I CYCGRG 1 cut(s) 710
BmgT120I GGNCC 5 cut(s) 193, 504, 818, 1061, 1127
BmiI GGNNCC 3 cut(s) 195, 407, 477
BmrFI CCNGG 4 cut(s) 188, 711, 712, 999
BmsI GCATC 1 cut(s) 251
BpiI GAAGAC 2 cut(s) 210, 644
BpmI CTGGAG 1 cut(s) 1184
Bpu10I CCTNAGC 1 cut(s) 341
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 3 cut(s) 188, 711, 712
BsaBI GATNNNNATC 1 cut(s) 722
BsaJI CCNNGG 4 cut(s) 6, 625, 710, 998
BsaWI WCCGGW 2 cut(s) 245, 379
BsaXI ACNNNNNCTCC 4 cut(s) 240, 269, 270, 299
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 308, 415
Bse21I CCTNAGG 1 cut(s) 992
Bse8I GATNNNNATC 1 cut(s) 722
BseAI TCCGGA 2 cut(s) 245, 379
BseBI CCWGG 1 cut(s) 999
BseDI CCNNGG 4 cut(s) 6, 625, 710, 998
BseGI GGATG 5 cut(s) 209, 242, 388, 512, 691
BseJI GATNNNNATC 1 cut(s) 722
BseLI CCNNNNNNNGG 3 cut(s) 190, 308, 415
BseMII CTCAG 2 cut(s) 355, 537
BseRI GAGGAG 6 cut(s) 245, 329, 398, 401, 511, 678
BseXI GCAGC 2 cut(s) 155, 431
BshFI GGCC 5 cut(s) 5, 194, 752, 997, 1129
BsiHKCI CYCGRG 1 cut(s) 710
BsiSI CCGG 6 cut(s) 188, 224, 246, 380, 711, 1130
BslFI GGGAC 1 cut(s) 727
BslI CCNNNNNNNGG 3 cut(s) 190, 308, 415
BsmAI GTCTC 2 cut(s) 36, 874
BsmFI GGGAC 1 cut(s) 727
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 5 cut(s) 5, 194, 752, 997, 1129
BsoBI CYCGRG 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 429
Bsp13I TCCGGA 2 cut(s) 245, 379
Bsp1407I TGTACA 1 cut(s) 861
Bsp143I GATC 3 cut(s) 214, 334, 1120
BspANI GGCC 5 cut(s) 5, 194, 752, 997, 1129
BspCNI CTCAG 2 cut(s) 354, 536
BspEI TCCGGA 2 cut(s) 245, 379
BspLI GGNNCC 3 cut(s) 195, 407, 477
BspMAI CTGCAG 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 1066
BsrGI TGTACA 1 cut(s) 861
BssECI CCNNGG 4 cut(s) 6, 625, 710, 998
BssMI GATC 3 cut(s) 214, 334, 1120
BssT1I CCWWGG 1 cut(s) 625
Bst2UI CCWGG 1 cut(s) 999
Bst4CI ACNGT 1 cut(s) 818
Bst6I CTCTTC 4 cut(s) 109, 332, 492, 1044
BstAPI GCANNNNNTGC 2 cut(s) 612, 922
BstAUI TGTACA 1 cut(s) 861
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 341, 523, 992
BstENI CCTNNNNNAGG 2 cut(s) 188, 413
BstF5I GGATG 5 cut(s) 209, 242, 388, 512, 691
BstKTI GATC 3 cut(s) 217, 337, 1123
BstMAI GTCTC 2 cut(s) 36, 874
BstMBI GATC 3 cut(s) 214, 334, 1120
BstMWI GCNNNNNNNGC 9 cut(s) 152, 161, 444, 447, 461, 612, 758, 922, 1168
BstNI CCWGG 1 cut(s) 999
BstSCI CCNGG 4 cut(s) 186, 709, 710, 997
BstSFI CTRYAG 3 cut(s) 198, 303, 982
BstV1I GCAGC 2 cut(s) 155, 431
BstV2I GAAGAC 2 cut(s) 210, 644
Bsu36I CCTNAGG 1 cut(s) 992
BsuI GTATCC 1 cut(s) 936
BsuRI GGCC 5 cut(s) 5, 194, 752, 997, 1129
BtsCI GGATG 5 cut(s) 209, 242, 388, 512, 691
Cac8I GCNNGC 1 cut(s) 319
CaiI CAGNNNCTG 1 cut(s) 883
Cfr13I GGNCC 5 cut(s) 193, 504, 818, 1061, 1127
Cfr9I CCCGGG 1 cut(s) 710
Csp6I GTAC 2 cut(s) 862, 1147
CviAII CATG 1 cut(s) 352
CviQI GTAC 2 cut(s) 862, 1147
DdeI CTNAG 3 cut(s) 341, 523, 992
DpnI GATC 3 cut(s) 216, 336, 1122
DpnII GATC 3 cut(s) 214, 334, 1120
DrdI GACNNNNNNGTC 1 cut(s) 524
DseDI GACNNNNNNGTC 1 cut(s) 524
EaeI YGGCCR 1 cut(s) 750
Eam1104I CTCTTC 4 cut(s) 109, 332, 492, 1044
EarI CTCTTC 4 cut(s) 109, 332, 492, 1044
EciI GGCGGA 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 625
Eco147I AGGCCT 1 cut(s) 997
Eco24I GRGCYC 1 cut(s) 429
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 3 cut(s) 504, 818, 1061
Eco81I CCTNAGG 1 cut(s) 992
Eco88I CYCGRG 1 cut(s) 710
EcoNI CCTNNNNNAGG 2 cut(s) 188, 413
EcoO109I RGGNCCY 1 cut(s) 193
EcoRI GAATTC 2 cut(s) 227, 1180
EcoRII CCWGG 1 cut(s) 997
EcoRV GATATC 1 cut(s) 979
EcoT14I CCWWGG 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 625
FaeI CATG 1 cut(s) 355
FaiI YATR 8 cut(s) 353, 471, 532, 588, 608, 836, 866, 1059
FaqI GGGAC 1 cut(s) 727
FatI CATG 1 cut(s) 351
FauI CCCGC 3 cut(s) 228, 443, 460
Fnu4HI GCNGC 7 cut(s) 144, 346, 439, 442, 445, 448, 742
FokI GGATG 5 cut(s) 196, 229, 395, 499, 698
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 7 cut(s) 144, 346, 439, 442, 445, 448, 742
FspBI CTAG 1 cut(s) 671
GluI GCNGC 7 cut(s) 144, 346, 439, 442, 445, 448, 742
GsuI CTGGAG 1 cut(s) 1184
HaeIII GGCC 5 cut(s) 5, 194, 752, 997, 1129
HapII CCGG 6 cut(s) 188, 224, 246, 380, 711, 1130
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 3 cut(s) 315, 496, 1115
HinfI GANTC 6 cut(s) 11, 284, 518, 640, 723, 987
HpaII CCGG 6 cut(s) 188, 224, 246, 380, 711, 1130
HphI GGTGA 1 cut(s) 1049
Hpy166II GTNNAC 2 cut(s) 507, 571
Hpy188I TCNGA 3 cut(s) 10, 214, 517
Hpy188III TCNNGA 5 cut(s) 246, 380, 703, 843, 1087
Hpy8I GTNNAC 2 cut(s) 507, 571
Hpy99I CGWCG 2 cut(s) 955, 1140
HpyCH4III ACNGT 1 cut(s) 818
HpyCH4IV ACGT 3 cut(s) 783, 927, 953
HpyCH4V TGCA 8 cut(s) 164, 242, 305, 321, 549, 606, 916, 925
HpyF10VI GCNNNNNNNGC 9 cut(s) 152, 161, 444, 447, 461, 612, 758, 922, 1168
HpyF3I CTNAG 3 cut(s) 341, 523, 992
HpySE526I ACGT 3 cut(s) 783, 927, 953
Hsp92II CATG 1 cut(s) 355
Kpn2I TCCGGA 2 cut(s) 245, 379
Kzo9I GATC 3 cut(s) 214, 334, 1120
LmnI GCTCC 2 cut(s) 411, 1132
Lsp1109I GCAGC 2 cut(s) 155, 431
LweI GCATC 1 cut(s) 251
MaeI CTAG 1 cut(s) 671
MaeII ACGT 3 cut(s) 783, 927, 953
MaeIII GTNAC 2 cut(s) 784, 793
MalI GATC 3 cut(s) 216, 336, 1122
MbiI CCGCTC 1 cut(s) 1066
MboI GATC 3 cut(s) 214, 334, 1120
MfeI CAATTG 1 cut(s) 789
MhlI GDGCHC 1 cut(s) 429
MlsI TGGCCA 1 cut(s) 752
MluCI AATT 4 cut(s) 227, 789, 937, 1180
MluNI TGGCCA 1 cut(s) 752
MlyI GAGTC 3 cut(s) 278, 512, 634
MmeI TCCRAC 2 cut(s) 312, 540
Mox20I TGGCCA 1 cut(s) 752
MroI TCCGGA 2 cut(s) 245, 379
MscI TGGCCA 1 cut(s) 752
MseI TTAA 2 cut(s) 179, 825
MslI CAYNNNNRTG 1 cut(s) 791
Msp20I TGGCCA 1 cut(s) 752
MspA1I CMGCKG 1 cut(s) 444
MspI CCGG 6 cut(s) 188, 224, 246, 380, 711, 1130
MspR9I CCNGG 4 cut(s) 188, 711, 712, 999
MunI CAATTG 1 cut(s) 789
Mva1269I GAATGC 1 cut(s) 916
MvaI CCWGG 1 cut(s) 999
MwoI GCNNNNNNNGC 9 cut(s) 152, 161, 444, 447, 461, 612, 758, 922, 1168
NciI CCSGG 3 cut(s) 188, 711, 712
NdeII GATC 3 cut(s) 214, 334, 1120
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 3 cut(s) 195, 407, 477
NmuCI GTSAC 2 cut(s) 784, 793
OliI CACNNNNGTG 1 cut(s) 791
PceI AGGCCT 1 cut(s) 997
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 3 cut(s) 11, 723, 987
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 7 cut(s) 145, 347, 440, 443, 446, 449, 743
PleI GAGTC 3 cut(s) 278, 512, 634
PpsI GAGTC 3 cut(s) 278, 512, 634
Psp6I CCWGG 1 cut(s) 997
PspGI CCWGG 1 cut(s) 997
PspN4I GGNNCC 3 cut(s) 195, 407, 477
PspPI GGNCC 5 cut(s) 193, 504, 818, 1061, 1127
PstI CTGCAG 1 cut(s) 307
PstNI CAGNNNCTG 1 cut(s) 883
RsaI GTAC 2 cut(s) 863, 1148
RsaNI GTAC 2 cut(s) 862, 1147
RseI CAYNNNNRTG 1 cut(s) 791
SaqAI TTAA 2 cut(s) 179, 825
SatI GCNGC 7 cut(s) 144, 346, 439, 442, 445, 448, 742
Sau3AI GATC 3 cut(s) 214, 334, 1120
Sau96I GGNCC 5 cut(s) 193, 504, 818, 1061, 1127
SchI GAGTC 3 cut(s) 278, 512, 634
ScrFI CCNGG 4 cut(s) 188, 711, 712, 999
SduI GDGCHC 1 cut(s) 429
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 3 cut(s) 198, 303, 982
SinI GGWCC 3 cut(s) 504, 818, 1061
SmaI CCCGGG 1 cut(s) 712
SmiMI CAYNNNNRTG 1 cut(s) 791
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 4 cut(s) 227, 789, 937, 1180
SseBI AGGCCT 1 cut(s) 997
SspMI CTAG 1 cut(s) 671
StuI AGGCCT 1 cut(s) 997
StyD4I CCNGG 4 cut(s) 186, 709, 710, 997
StyI CCWWGG 1 cut(s) 625
TaaI ACNGT 1 cut(s) 818
TaiI ACGT 3 cut(s) 786, 930, 956
TaqI TCGA 1 cut(s) 894
TasI AATT 4 cut(s) 227, 789, 937, 1180
TatI WGTACW 1 cut(s) 861
TauI GCSGC 5 cut(s) 348, 441, 444, 450, 744
TfiI GAWTC 3 cut(s) 11, 723, 987
Tru1I TTAA 2 cut(s) 179, 825
Tru9I TTAA 2 cut(s) 179, 825
TseFI GTSAC 2 cut(s) 784, 793
TseI GCWGC 2 cut(s) 143, 444
Tsp45I GTSAC 2 cut(s) 784, 793
TspDTI ATGAA 5 cut(s) 340, 702, 821, 823, 950
TspMI CCCGGG 1 cut(s) 710
VpaK11BI GGWCC 3 cut(s) 504, 818, 1061
XagI CCTNNNNNAGG 2 cut(s) 188, 413
XapI RAATTY 2 cut(s) 227, 1180
XmaI CCCGGG 1 cut(s) 710
XspI CTAG 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.