Rh3AG303400

Putative S-adenosyl-L-methionine-dependent methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Reverse (-)
37453443 .. 37454821
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG303400.1

Sequence Viewer

Length: 1161 bp
ATGAAGCAAAAATCCACAGATTCCCCTCATGATAAATTCAAGTCTTCTTCCTCGAATAACCTCTTCTTCCTTCTCCTTCTCCTCTTAACAAATCTCATCACCTTGTTCATTTCCTCATCCCTTTTCTCCTGTTCCTACAAGTCCCTCTCCACCACCGTCGAGGAAACCGCCACCATAGCATCCGACCTCCCGCCCGAATTCCTTGCCTTCACATCCGGACAAGCTCTCCCTTTCGGATTCAACACCAACTTCGATTCCGACACCATTTACCCTCCAGCAGGCAAAGCATGCACACTCTTCCCCGACGAACTCCGTCGCTACATGTCATACAAAGTCAACGGTTCGTGTCCTGACGACGAGCTCCTAGCCCAAAAGCTCCTCCTCAAGGGCTGCGAGCCCTTACCTCGGCGCCGGTGCCGCCCCGCCTCTCAACCGGAGTACACTGAACCCTACCCTCTCCCCATCAGCCTATGGACCACGCCGTCCGACTCTTCAGTCGTGTGGACAGCGTACACATGCAAGAACTACAACTGCCTCGTCAACAGAAAACGAAACGAGAAAGGCTTCTCCGACTGCAAAGACTGCTTCGACCTCCAAGCAAACGAGAAGTCTCGCTGGGCAAGGTCTAAAGGAGGAGGCCTCGATTTCAGCATAGACGAAGTCTTGGCCACCAAGCCACGCGGCAGCATACGAATCGGCCTAGACGTCGGCGGCGGGGTGGCCACGTTCGCCGTGAGAATGAGAGAGAGGAACATAACGATCGTAACGACGTCGATGAACTTGAACGGCCCTTTCAACAACTTCATAGCGTCGAGAGGTGTGGTTCCTCTCTACATAAGCATTTCACAGAGGCTGCCGTTCTACGACAACACTTTGGACATCGTACACTCCATGCACGTTCTCAGTAACTGGATTCCGACGACATTGCTTCATTTTGCCTTCTTTGATGTCTACAGAGTGCTTAGGCCTGGGGGGTTGTTCTGGCTCGACCATTTTTTCTGTGTGGGTGAGCAGTTGGAGGAGATTTATGGACCATTGATCAAGAGCATTGGATTCAACAAGTTGAAGTGGGTTGTTGGGAGGAAGCTTGATCGAGGCCCTGAGCTTAGGGAGATGTACCTTTCGGCTTTGTTGGAGAAGCCATTGAAGAACTCGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

386

Amino Acids

43.64

Weight (kDa)

8.7

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_29 PF03141 174 - 328 4.4e-09 Putative S-adenosyl-L-methionine-dependent methyltransferase
Methyltransf_11 PF08241 234 - 328 9.3e-07 Methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017593)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29960
malus_domestica MD17G1262900.v1.1
prunus_persica Prupe.3G164600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0492371
rosa_laevigata RLG00000022779
rosa_multiflora Rmu_sc0003156.1_g000020
rosa_roxburghii Rroxscaffold_6G00392380
rosa_samantha Rh3AG303400 Rh3BG339600 Rh3CG336600 Rh3DG338700
rosa_wichuraiana Rw3G026770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 481, 494
AatII GACGTC 2 cut(s) 708, 773
AccB1I GGYRCC 2 cut(s) 408, 414
AccI GTMKAC 1 cut(s) 951
AccII CGCG 1 cut(s) 681
AccIII TCCGGA 1 cut(s) 215
AciI CCGC 7 cut(s) 168, 191, 418, 423, 681, 711, 714
AcoI YGGCCR 2 cut(s) 666, 720
AcsI RAATTY 2 cut(s) 35, 197
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 3 cut(s) 409, 705, 770
AfaI GTAC 4 cut(s) 440, 512, 885, 1118
AfiI CCNNNNNNNGG 3 cut(s) 278, 385, 405
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 7 cut(s) 40, 241, 784, 796, 1057, 1066, 1147
AjnI CCWGG 1 cut(s) 967
AluBI AGCT 5 cut(s) 224, 361, 376, 1087, 1105
AluI AGCT 5 cut(s) 224, 361, 376, 1087, 1105
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 1 cut(s) 615
AlwNI CAGNNNCTG 2 cut(s) 853, 909
Aor13HI TCCGGA 1 cut(s) 215
AoxI GGCC 7 cut(s) 637, 666, 697, 720, 787, 965, 1096
ApeKI GCWGC 3 cut(s) 390, 684, 853
ApoI RAATTY 2 cut(s) 35, 197
ArsI GACNNNNNNTTYG 2 cut(s) 593, 625
Asp700I GAANNNNTTC 1 cut(s) 563
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 4 cut(s) 474, 788, 1031, 1097
AsuHPI GGTGA 2 cut(s) 91, 1019
AvaII GGWCC 2 cut(s) 474, 1031
BalI TGGCCA 2 cut(s) 668, 722
BanI GGYRCC 2 cut(s) 408, 414
BanII GRGCYC 2 cut(s) 363, 399
BauI CACGAG 1 cut(s) 1153
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 377, 696, 840
BccI CCATC 1 cut(s) 470
BceAI ACGGC 4 cut(s) 466, 716, 802, 841
BcgI CGANNNNNNTGC 6 cut(s) 185, 219, 676, 710, 907, 941
BciT130I CCWGG 1 cut(s) 969
BclI TGATCA 1 cut(s) 1038
BcoDI GTCTC 1 cut(s) 615
BfaI CTAG 2 cut(s) 365, 701
BfmI CTRYAG 1 cut(s) 952
BfoI RGCGCY 1 cut(s) 412
BisI GCNGC 6 cut(s) 391, 418, 682, 685, 712, 854
BlsI GCNGC 6 cut(s) 392, 419, 683, 686, 713, 855
Bme1390I CCNGG 1 cut(s) 969
Bme18I GGWCC 2 cut(s) 474, 1031
BmgT120I GGNCC 4 cut(s) 474, 788, 1031, 1097
BmiI GGNNCC 3 cut(s) 410, 416, 825
BmrFI CCNGG 1 cut(s) 969
BmsI GCATC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 3 cut(s) 962, 1101, 1106
BpuEI CTTGAG 1 cut(s) 368
BsaHI GRCGYC 3 cut(s) 409, 705, 770
BsaJI CCNNGG 2 cut(s) 404, 968
BsaWI WCCGGW 2 cut(s) 215, 433
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 385, 405
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 914
Bse3DI GCAATG 1 cut(s) 923
BseAI TCCGGA 1 cut(s) 215
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 2 cut(s) 404, 968
BseGI GGATG 3 cut(s) 116, 179, 212
BseLI CCNNNNNNNGG 3 cut(s) 278, 385, 405
BseMI GCAATG 1 cut(s) 923
BseMII CTCAG 2 cut(s) 916, 1092
BseNI ACTGG 1 cut(s) 914
BseRI GAGGAG 5 cut(s) 71, 368, 371, 648, 1034
BseXI GCAGC 3 cut(s) 377, 696, 840
BseYI CCCAGC 1 cut(s) 615
Bsh1236I CGCG 1 cut(s) 681
Bsh1285I CGRYCG 1 cut(s) 762
BshFI GGCC 7 cut(s) 639, 668, 699, 722, 789, 967, 1098
BshNI GGYRCC 2 cut(s) 408, 414
BsiEI CGRYCG 1 cut(s) 762
BsiHKAI GWGCWC 1 cut(s) 363
BsiSI CCGG 3 cut(s) 216, 412, 434
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 3 cut(s) 278, 385, 405
BsmAI GTCTC 1 cut(s) 615
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 7 cut(s) 639, 668, 699, 722, 789, 967, 1098
Bsp1286I GDGCHC 2 cut(s) 363, 399
Bsp13I TCCGGA 1 cut(s) 215
Bsp143I GATC 3 cut(s) 759, 1038, 1090
BspACI CCGC 7 cut(s) 168, 191, 418, 423, 681, 711, 714
BspANI GGCC 7 cut(s) 639, 668, 699, 722, 789, 967, 1098
BspCNI CTCAG 2 cut(s) 915, 1093
BspEI TCCGGA 1 cut(s) 215
BspFNI CGCG 1 cut(s) 681
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 410, 416, 825
BspT107I GGYRCC 2 cut(s) 408, 414
BsrDI GCAATG 1 cut(s) 923
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 1 cut(s) 914
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 2 cut(s) 404, 968
BssMI GATC 3 cut(s) 759, 1038, 1090
BssNI GRCGYC 3 cut(s) 409, 705, 770
BssSI CACGAG 1 cut(s) 1153
Bst2BI CACGAG 1 cut(s) 1153
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 2 cut(s) 157, 341
Bst6I CTCTTC 3 cut(s) 68, 302, 496
BstACI GRCGYC 3 cut(s) 409, 705, 770
BstAPI GCANNNNNTGC 2 cut(s) 288, 582
BstC8I GCNNGC 3 cut(s) 280, 289, 395
BstDEI CTNAG 4 cut(s) 902, 962, 1101, 1106
BstENI CCTNNNNNAGG 2 cut(s) 276, 383
BstF5I GGATG 3 cut(s) 116, 179, 212
BstFNI CGCG 1 cut(s) 681
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 3 cut(s) 762, 1041, 1093
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 3 cut(s) 759, 1038, 1090
BstMCI CGRYCG 1 cut(s) 762
BstMWI GCNNNNNNNGC 6 cut(s) 176, 284, 288, 417, 582, 728
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 3 cut(s) 291, 325, 519
BstSCI CCNGG 1 cut(s) 967
BstSFI CTRYAG 1 cut(s) 952
BstUI CGCG 1 cut(s) 681
BstV1I GCAGC 3 cut(s) 377, 696, 840
BstV2I GAAGAC 1 cut(s) 36
BsuRI GGCC 7 cut(s) 639, 668, 699, 722, 789, 967, 1098
BtsCI GGATG 3 cut(s) 116, 179, 212
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 280, 289, 395
CaiI CAGNNNCTG 2 cut(s) 853, 909
CciI TCATGA 1 cut(s) 28
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 4 cut(s) 474, 788, 1031, 1097
CseI GACGC 1 cut(s) 798
Csp6I GTAC 4 cut(s) 439, 511, 884, 1117
CviAII CATG 5 cut(s) 29, 288, 322, 516, 892
CviQI GTAC 4 cut(s) 439, 511, 884, 1117
DdeI CTNAG 4 cut(s) 902, 962, 1101, 1106
DinI GGCGCC 1 cut(s) 410
DpnI GATC 3 cut(s) 761, 1040, 1092
DpnII GATC 3 cut(s) 759, 1038, 1090
DrdI GACNNNNNNGTC 2 cut(s) 481, 494
DseDI GACNNNNNNGTC 2 cut(s) 481, 494
EaeI YGGCCR 2 cut(s) 666, 720
Eam1104I CTCTTC 3 cut(s) 68, 302, 496
EarI CTCTTC 3 cut(s) 68, 302, 496
Ecl136II GAGCTC 1 cut(s) 361
Eco147I AGGCCT 2 cut(s) 639, 967
Eco24I GRGCYC 2 cut(s) 363, 399
Eco47I GGWCC 2 cut(s) 474, 1031
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 361
EcoNI CCTNNNNNAGG 2 cut(s) 276, 383
EcoO109I RGGNCCY 1 cut(s) 1097
EcoRI GAATTC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 967
EcoT38I GRGCYC 2 cut(s) 363, 399
EgeI GGCGCC 1 cut(s) 410
EheI GGCGCC 1 cut(s) 410
FaeI CATG 5 cut(s) 32, 291, 325, 519, 895
FaqI GGGAC 1 cut(s) 127
FatI CATG 5 cut(s) 28, 287, 321, 515, 891
FauI CCCGC 3 cut(s) 198, 430, 707
FbaI TGATCA 1 cut(s) 1038
FblI GTMKAC 1 cut(s) 951
Fnu4HI GCNGC 6 cut(s) 391, 418, 682, 685, 712, 854
FokI GGATG 3 cut(s) 103, 166, 199
FriOI GRGCYC 2 cut(s) 363, 399
Fsp4HI GCNGC 6 cut(s) 391, 418, 682, 685, 712, 854
FspBI CTAG 2 cut(s) 365, 701
GlaI GCGC 1 cut(s) 410
GluI GCNGC 6 cut(s) 391, 418, 682, 685, 712, 854
GsaI CCCAGC 1 cut(s) 619
GsuI CTGGAG 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 7 cut(s) 639, 668, 699, 722, 789, 967, 1098
HapII CCGG 3 cut(s) 216, 412, 434
HgaI GACGC 1 cut(s) 798
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 3 cut(s) 409, 705, 770
Hin1II CATG 5 cut(s) 32, 291, 325, 519, 895
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 2 cut(s) 337, 541
HindII GTYRAC 2 cut(s) 337, 541
HindIII AAGCTT 1 cut(s) 1085
HinfI GANTC 7 cut(s) 20, 237, 254, 488, 693, 913, 1053
HpaII CCGG 3 cut(s) 216, 412, 434
HphI GGTGA 2 cut(s) 91, 1019
Hpy166II GTNNAC 7 cut(s) 337, 441, 504, 513, 541, 886, 952
Hpy188I TCNGA 6 cut(s) 184, 236, 259, 487, 571, 918
Hpy188III TCNNGA 5 cut(s) 29, 216, 350, 813, 1042
Hpy8I GTNNAC 7 cut(s) 337, 441, 504, 513, 541, 886, 952
Hpy99I CGWCG 9 cut(s) 161, 308, 318, 359, 710, 772, 775, 814, 922
HpyAV CCTTC 4 cut(s) 80, 86, 217, 949
HpyCH4III ACNGT 2 cut(s) 157, 341
HpyCH4IV ACGT 4 cut(s) 705, 725, 770, 897
HpyCH4V TGCA 4 cut(s) 291, 519, 576, 895
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 284, 288, 417, 582, 728
HpyF3I CTNAG 4 cut(s) 902, 962, 1101, 1106
HpySE526I ACGT 4 cut(s) 705, 725, 770, 897
Hsp92I GRCGYC 3 cut(s) 409, 705, 770
Hsp92II CATG 5 cut(s) 32, 291, 325, 519, 895
HspAI GCGC 1 cut(s) 409
KasI GGCGCC 1 cut(s) 408
Kpn2I TCCGGA 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 1038
Kzo9I GATC 3 cut(s) 759, 1038, 1090
LmnI GCTCC 2 cut(s) 366, 381
Lsp1109I GCAGC 3 cut(s) 377, 696, 840
LweI GCATC 1 cut(s) 188
MaeI CTAG 2 cut(s) 365, 701
MaeII ACGT 4 cut(s) 705, 725, 770, 897
MaeIII GTNAC 2 cut(s) 763, 905
MalI GATC 3 cut(s) 761, 1040, 1092
MboI GATC 3 cut(s) 759, 1038, 1090
MboII GAAGA 7 cut(s) 36, 39, 55, 58, 289, 483, 1159
MhlI GDGCHC 2 cut(s) 363, 399
MlsI TGGCCA 2 cut(s) 668, 722
MluCI AATT 2 cut(s) 35, 197
MluNI TGGCCA 2 cut(s) 668, 722
Mly113I GGCGCC 1 cut(s) 409
MlyI GAGTC 1 cut(s) 482
MmeI TCCRAC 7 cut(s) 207, 282, 510, 594, 941, 996, 1113
Mox20I TGGCCA 2 cut(s) 668, 722
MroI TCCGGA 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 563
MscI TGGCCA 2 cut(s) 668, 722
MseI TTAA 1 cut(s) 86
Msp20I TGGCCA 2 cut(s) 668, 722
MspI CCGG 3 cut(s) 216, 412, 434
MspR9I CCNGG 1 cut(s) 969
MvaI CCWGG 1 cut(s) 969
MvnI CGCG 1 cut(s) 681
MwoI GCNNNNNNNGC 6 cut(s) 176, 284, 288, 417, 582, 728
NarI GGCGCC 1 cut(s) 409
NdeII GATC 3 cut(s) 759, 1038, 1090
NlaIII CATG 5 cut(s) 32, 291, 325, 519, 895
NlaIV GGNNCC 3 cut(s) 410, 416, 825
NmeAIII GCCGAG 1 cut(s) 385
NspI RCATGY 3 cut(s) 291, 325, 519
PaeI GCATGC 1 cut(s) 291
PagI TCATGA 1 cut(s) 28
PceI AGGCCT 2 cut(s) 639, 967
PciI ACATGT 1 cut(s) 321
PcsI WCGNNNNNNNCGW 2 cut(s) 702, 764
PdmI GAANNNNTTC 1 cut(s) 563
PfeI GAWTC 6 cut(s) 20, 237, 254, 693, 913, 1053
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 6 cut(s) 392, 419, 683, 686, 713, 855
Ple19I CGATCG 1 cut(s) 762
PleI GAGTC 1 cut(s) 482
PluTI GGCGCC 1 cut(s) 412
PpsI GAGTC 1 cut(s) 482
PscI ACATGT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 1 cut(s) 967
PspFI CCCAGC 1 cut(s) 615
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 3 cut(s) 410, 416, 825
PspPI GGNCC 4 cut(s) 474, 788, 1031, 1097
PstNI CAGNNNCTG 2 cut(s) 853, 909
PsyI GACNNNGTC 1 cut(s) 659
PvuI CGATCG 1 cut(s) 762
RsaI GTAC 4 cut(s) 440, 512, 885, 1118
RsaNI GTAC 4 cut(s) 439, 511, 884, 1117
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 86
SatI GCNGC 6 cut(s) 391, 418, 682, 685, 712, 854
Sau3AI GATC 3 cut(s) 759, 1038, 1090
Sau96I GGNCC 4 cut(s) 474, 788, 1031, 1097
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 1 cut(s) 969
SduI GDGCHC 2 cut(s) 363, 399
SfaNI GCATC 1 cut(s) 188
SfcI CTRYAG 1 cut(s) 952
SfoI GGCGCC 1 cut(s) 410
SgrAI CRCCGGYG 1 cut(s) 411
SinI GGWCC 2 cut(s) 474, 1031
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 291
Sse9I AATT 2 cut(s) 35, 197
SseBI AGGCCT 2 cut(s) 639, 967
SsiI CCGC 7 cut(s) 168, 191, 418, 423, 681, 711, 714
SspDI GGCGCC 1 cut(s) 408
SspMI CTAG 2 cut(s) 365, 701
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 2 cut(s) 639, 967
StyD4I CCNGG 1 cut(s) 967
TaaI ACNGT 2 cut(s) 157, 341
TaiI ACGT 4 cut(s) 708, 728, 773, 900
TaqI TCGA 9 cut(s) 53, 159, 252, 588, 642, 773, 812, 987, 1093
TasI AATT 2 cut(s) 35, 197
TatI WGTACW 1 cut(s) 438
TauI GCSGC 3 cut(s) 420, 684, 714
TfiI GAWTC 6 cut(s) 20, 237, 254, 693, 913, 1053
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TscAI CASTG 1 cut(s) 448
TseI GCWGC 3 cut(s) 390, 684, 853
TspDTI ATGAA 5 cut(s) 17, 97, 791, 793, 920
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 448
Tth111I GACNNNGTC 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 474, 1031
XagI CCTNNNNNAGG 2 cut(s) 276, 383
XapI RAATTY 2 cut(s) 35, 197
XceI RCATGY 3 cut(s) 291, 325, 519
XmiI GTMKAC 1 cut(s) 951
XmnI GAANNNNTTC 1 cut(s) 563
XspI CTAG 2 cut(s) 365, 701
ZraI GACGTC 2 cut(s) 706, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.