Prupe.3G232500_v2.0.a1

cystathionine gamma-lyase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0017349
Physical Location & Seq
Reverse (-)
22902642 .. 22905435
2794 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G232500.1

Sequence Viewer

Length: 1554 bp
ATGGCTAAGGGGAATGGGAATGGAAGCAGCAACAACAGCAGCAGAGGGAGGCCATATGGATTGATGTTGGTGATGGCATTTGGGGCAGCATTGCTTGGGGTGATGGTGCTTCACAAGCTCAGGGAGAGGCGCATCTTCAACCTCCTCCTCAAAGAGAAAGACACCGACCTCATTTCTCTTCACCACCTTTTACAGAAGGAGAGATACTACGCCAAAGAGTTGAAAAGGAAGAACGAAGAGATGACAACGAAGCTATACTCCATTAGAACCCAAAAGATGGAGCTTGACAGAAGAGTCTTGGAGTTGAAGTCCACCATTGATTCGCTTAAAGAGGAGCTACAAACCATGGAGGCCGCACTTGAGGAGAAGCAGAGTGAAATCAAAATGCAGAGAGTGAACGTGGAGAATGAGAATCCTCAAGTGGTGGAATTATTAGAAATCTTGAAGAAAAAAGAAGCTGAAGTTGAAGATTTGAAACAACATCTTGAATACCCGGTTAAGGTCTCGTGGGTGAGCACTGATGATCCATCAAATCCAGCTGTAAATCTAACCTTGTCTGAAAGTGTGGCAGGAAAAGGGAAAACAGAGGTGACTGAGACTACAGAAGAGGCTGATCGATTGCAAGAATCCACCATCTCTAACAAGGACATTGAGAAAGAAAGGCCAAGTGAAGGTGGAAGTGGGAATAAATCCATTCGTCTTAGACAGGGTGAGAACACAACAGAAGTAGACGATCAAATTGGAAACGGAGAGGGAGAAACTGATAGGAGAGAAATGATGAGCAAACAGTCAGAGAATTTCATGAACCCTAAAGACGGGAATATCAAAGGGGACACCGAAGAGGAGGGCCAAGGAAAGAGAGGTGAGAATTTCAAAGATGGTGAGGAAAGTAACCTGGCAAATGCAGCTGAGGCAATTAGTGACACTAATGGAAAAGATGATGGAAATATTGAAAACTCTGAACTCAATGAGAGTCAGAAACTTCATGCGCCTCCTAATGGTGGGATGAAGTTGGAAATGCAAGACAACTCTGACAACAGTGGAAGGTCTAGAAGAGTGAGAGGGAAGCATGGCTTTATTAGTGGCGATAGACGTAAGAAATCGAGATTAATTGCTAAGTACAGGAGGTTGGGGAACAGGGGAAATTTTAAAACCAACGGAGTGGGAAGTGTAGGAAGTGTGAGAAGTACAAGATTCAGCAAAGATGGTCAGAATGGGTCTATGGACAGTGGAGACTTAGAGGAAGCAGCTTCAAACAGGAGACTTAAAGGTGATAGCAAACAGAGACTTGAAGTTGGAAAATCAGAAGACCATGAAGCCATTAACATGCAACAACAGAACCTAAACAACAGGGATATCAAGAAACCAGAAAATAGTGCTGAAAAAACGAAATCTGCCGATACGCAGGACTTGCCAGCAGATTTGGAAGTTGCAGATGCAGAGGAACAAGAAAAAGATGCAACTGATGATAATGTCTTTGATGAATTATCTGGTTCCAATTTGGAAGAAGATAAAGAAGAGTACAGGGAGGAAGTAGATGAGTCTGAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

518

Amino Acids

58.08

Weight (kDa)

5.06

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017349)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44840
prunus_persica Prupe.3G232500_v2.0.a1
pyrus_communis pycom09g01800
rosa_chinensis RchiOBHm_Chr2g0162021
rosa_laevigata RLG00000021315
rosa_multiflora Rmu_co8492063.1_g000001
rosa_roxburghii Rroxscaffold_2G00088390
rosa_rugosa Rorug02G0494000
rosa_samantha Rh2AG560000 Rh2BG573400 Rh2CG543600 Rh2DG583200
rosa_wichuraiana Rw2G046350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 277
AccI GTMKAC 1 cut(s) 729
AciI CCGC 1 cut(s) 354
AclWI GGATC 1 cut(s) 518
AcsI RAATTY 4 cut(s) 796, 868, 1144, 1547
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 3 cut(s) 1121, 1189, 1523
AfiI CCNNNNNNNGG 6 cut(s) 277, 499, 671, 815, 998, 1001
AjnI CCWGG 1 cut(s) 894
AluBI AGCT 8 cut(s) 118, 253, 283, 337, 458, 539, 908, 1250
AluI AGCT 8 cut(s) 118, 253, 283, 337, 458, 539, 908, 1250
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 5 cut(s) 508, 590, 1227, 1255, 1279
AlwI GGATC 1 cut(s) 518
AoxI GGCC 4 cut(s) 50, 351, 662, 847
ApeKI GCWGC 5 cut(s) 27, 39, 86, 905, 1247
ApoI RAATTY 4 cut(s) 796, 868, 1144, 1547
AseI ATTAAT 1 cut(s) 1109
AspLEI GCGC 2 cut(s) 132, 991
AspS9I GGNCC 1 cut(s) 847
AsuC2I CCSGG 1 cut(s) 494
AsuHPI GGTGA 9 cut(s) 82, 112, 173, 523, 601, 722, 875, 893, 1283
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
BauI CACGAG 1 cut(s) 505
BbsI GAAGAC 1 cut(s) 1314
Bbv12I GWGCWC 1 cut(s) 518
BbvCI CCTCAGC 1 cut(s) 909
BbvI GCAGC 5 cut(s) 39, 51, 98, 917, 1259
BccI CCATC 8 cut(s) 67, 97, 271, 535, 641, 872, 935, 1199
BciT130I CCWGG 1 cut(s) 896
BcnI CCSGG 1 cut(s) 494
BcoDI GTCTC 5 cut(s) 508, 590, 1227, 1255, 1279
BfaI CTAG 1 cut(s) 1050
BfmI CTRYAG 1 cut(s) 600
BisI GCNGC 6 cut(s) 28, 40, 87, 354, 906, 1248
BlsI GCNGC 6 cut(s) 29, 41, 88, 355, 907, 1249
Bme1390I CCNGG 2 cut(s) 494, 896
BmgT120I GGNCC 1 cut(s) 847
BmiI GGNNCC 1 cut(s) 1495
BmrFI CCNGG 2 cut(s) 494, 896
BmsI GCATC 3 cut(s) 141, 1426, 1447
BpiI GAAGAC 1 cut(s) 1314
Bpu10I CCTNAGC 3 cut(s) 6, 119, 909
BpuEI CTTGAG 2 cut(s) 380, 402
BpuMI CCSGG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 616
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 2 cut(s) 345, 850
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 6 cut(s) 277, 499, 671, 815, 998, 1001
Bse3DI GCAATG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 896
BseCI ATCGAT 1 cut(s) 616
BseDI CCNNGG 2 cut(s) 345, 850
BseGI GGATG 1 cut(s) 1011
BseLI CCNNNNNNNGG 6 cut(s) 277, 499, 671, 815, 998, 1001
BseMI GCAATG 1 cut(s) 89
BseMII CTCAG 3 cut(s) 133, 585, 900
BseRI GAGGAG 5 cut(s) 134, 137, 347, 377, 857
BseXI GCAGC 5 cut(s) 39, 51, 98, 917, 1259
BshFI GGCC 4 cut(s) 52, 353, 664, 849
BshVI ATCGAT 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 518
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 1 cut(s) 845
BslI CCNNNNNNNGG 6 cut(s) 277, 499, 671, 815, 998, 1001
BsmAI GTCTC 5 cut(s) 508, 590, 1227, 1255, 1279
BsmFI GGGAC 1 cut(s) 845
BsnI GGCC 4 cut(s) 52, 353, 664, 849
Bso31I GGTCTC 1 cut(s) 508
Bsp1286I GDGCHC 1 cut(s) 518
Bsp143I GATC 3 cut(s) 523, 613, 733
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 1 cut(s) 354
BspANI GGCC 4 cut(s) 52, 353, 664, 849
BspCNI CTCAG 3 cut(s) 132, 586, 901
BspDI ATCGAT 1 cut(s) 616
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 1 cut(s) 1495
BspPI GGATC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 508
BsrDI GCAATG 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 345, 850
BssMI GATC 3 cut(s) 523, 613, 733
BssSI CACGAG 1 cut(s) 505
BssT1I CCWWGG 2 cut(s) 345, 850
Bst2BI CACGAG 1 cut(s) 505
Bst2UI CCWGG 1 cut(s) 896
Bst4CI ACNGT 3 cut(s) 789, 1040, 1229
Bst6I CTCTTC 7 cut(s) 183, 231, 286, 600, 834, 1048, 1512
BstAPI GCANNNNNTGC 1 cut(s) 1411
BstC8I GCNNGC 1 cut(s) 1416
BstDEI CTNAG 7 cut(s) 6, 119, 594, 701, 909, 1116, 1237
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 1011
BstHHI GCGC 2 cut(s) 132, 991
BstKTI GATC 3 cut(s) 526, 616, 736
BstMAI GTCTC 5 cut(s) 508, 590, 1227, 1255, 1279
BstMBI GATC 3 cut(s) 523, 613, 733
BstMWI GCNNNNNNNGC 6 cut(s) 36, 83, 115, 905, 911, 1411
BstNI CCWGG 1 cut(s) 896
BstNSI RCATGY 1 cut(s) 1330
BstSCI CCNGG 2 cut(s) 492, 894
BstSFI CTRYAG 1 cut(s) 600
BstV1I GCAGC 5 cut(s) 39, 51, 98, 917, 1259
BstV2I GAAGAC 1 cut(s) 1314
BstXI CCANNNNNNTGG 1 cut(s) 1162
Bsu15I ATCGAT 1 cut(s) 616
BsuRI GGCC 4 cut(s) 52, 353, 664, 849
BsuTUI ATCGAT 1 cut(s) 616
BtgI CCRYGG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 1011
BtsIMutI CAGTG 3 cut(s) 516, 1045, 1234
Cac8I GCNNGC 1 cut(s) 1416
CciI TCATGA 1 cut(s) 801
CfoI GCGC 2 cut(s) 132, 991
Cfr13I GGNCC 1 cut(s) 847
ClaI ATCGAT 1 cut(s) 616
Csp6I GTAC 3 cut(s) 1120, 1188, 1522
CviAII CATG 6 cut(s) 346, 802, 986, 1070, 1313, 1327
CviQI GTAC 3 cut(s) 1120, 1188, 1522
DdeI CTNAG 7 cut(s) 6, 119, 594, 701, 909, 1116, 1237
DpnI GATC 3 cut(s) 525, 615, 735
DpnII GATC 3 cut(s) 523, 613, 733
DraI TTTAAA 1 cut(s) 1150
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
Eam1104I CTCTTC 7 cut(s) 183, 231, 286, 600, 834, 1048, 1512
EarI CTCTTC 7 cut(s) 183, 231, 286, 600, 834, 1048, 1512
Eco130I CCWWGG 2 cut(s) 345, 850
Eco31I GGTCTC 1 cut(s) 508
Eco32I GATATC 1 cut(s) 1357
Eco57I CTGAAG 1 cut(s) 480
EcoRII CCWGG 1 cut(s) 894
EcoRV GATATC 1 cut(s) 1357
EcoT14I CCWWGG 2 cut(s) 345, 850
ErhI CCWWGG 2 cut(s) 345, 850
FaeI CATG 6 cut(s) 349, 805, 989, 1073, 1316, 1330
FalI AAGNNNNNCTT 2 cut(s) 1058, 1090
FaqI GGGAC 1 cut(s) 845
FatI CATG 6 cut(s) 345, 801, 985, 1069, 1312, 1326
FauNDI CATATG 1 cut(s) 55
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 6 cut(s) 28, 40, 87, 354, 906, 1248
FokI GGATG 1 cut(s) 1018
Fsp4HI GCNGC 6 cut(s) 28, 40, 87, 354, 906, 1248
FspBI CTAG 1 cut(s) 1050
GlaI GCGC 2 cut(s) 131, 990
GluI GCNGC 6 cut(s) 28, 40, 87, 354, 906, 1248
HaeIII GGCC 4 cut(s) 52, 353, 664, 849
HapII CCGG 1 cut(s) 494
HhaI GCGC 2 cut(s) 132, 991
Hin1II CATG 6 cut(s) 349, 805, 989, 1073, 1316, 1330
Hin6I GCGC 2 cut(s) 130, 989
HinP1I GCGC 2 cut(s) 130, 989
HinfI GANTC 7 cut(s) 294, 320, 412, 626, 973, 1194, 1541
HpaII CCGG 1 cut(s) 494
HphI GGTGA 9 cut(s) 82, 112, 173, 523, 601, 722, 875, 893, 1283
Hpy166II GTNNAC 3 cut(s) 312, 397, 730
Hpy188I TCNGA 8 cut(s) 559, 793, 961, 978, 1033, 1212, 1306, 1546
Hpy188III TCNNGA 6 cut(s) 442, 485, 802, 1050, 1104, 1360
Hpy8I GTNNAC 3 cut(s) 312, 397, 730
HpyAV CCTTC 3 cut(s) 190, 665, 1038
HpyCH4III ACNGT 3 cut(s) 789, 1040, 1229
HpyCH4IV ACGT 2 cut(s) 399, 1093
HpyCH4V TGCA 8 cut(s) 388, 622, 905, 1021, 1330, 1433, 1439, 1460
HpyF10VI GCNNNNNNNGC 6 cut(s) 36, 83, 115, 905, 911, 1411
HpyF3I CTNAG 7 cut(s) 6, 119, 594, 701, 909, 1116, 1237
HpySE526I ACGT 2 cut(s) 399, 1093
Hsp92II CATG 6 cut(s) 349, 805, 989, 1073, 1316, 1330
HspAI GCGC 2 cut(s) 130, 989
Kzo9I GATC 3 cut(s) 523, 613, 733
LmnI GCTCC 2 cut(s) 280, 334
Lsp1109I GCAGC 5 cut(s) 39, 51, 98, 917, 1259
LweI GCATC 3 cut(s) 141, 1426, 1447
MaeI CTAG 1 cut(s) 1050
MaeII ACGT 2 cut(s) 399, 1093
MaeIII GTNAC 3 cut(s) 589, 890, 920
MalI GATC 3 cut(s) 525, 615, 735
MboI GATC 3 cut(s) 523, 613, 733
MhlI GDGCHC 1 cut(s) 518
MlyI GAGTC 3 cut(s) 303, 982, 1550
MmeI TCCRAC 2 cut(s) 993, 1276
MseI TTAA 6 cut(s) 327, 498, 1109, 1149, 1266, 1323
MslI CAYNNNNRTG 1 cut(s) 1325
MspA1I CMGCKG 2 cut(s) 539, 908
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 2 cut(s) 494, 896
MvaI CCWGG 1 cut(s) 896
MwoI GCNNNNNNNGC 6 cut(s) 36, 83, 115, 905, 911, 1411
NciI CCSGG 1 cut(s) 494
NcoI CCATGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 55
NdeII GATC 3 cut(s) 523, 613, 733
NlaIII CATG 6 cut(s) 349, 805, 989, 1073, 1316, 1330
NlaIV GGNNCC 1 cut(s) 1495
NmuCI GTSAC 2 cut(s) 589, 920
NspI RCATGY 1 cut(s) 1330
PagI TCATGA 1 cut(s) 801
PfeI GAWTC 4 cut(s) 320, 412, 626, 1194
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 6 cut(s) 29, 41, 88, 355, 907, 1249
PleI GAGTC 3 cut(s) 302, 981, 1549
PpsI GAGTC 3 cut(s) 302, 981, 1549
PshBI ATTAAT 1 cut(s) 1109
Psp6I CCWGG 1 cut(s) 894
PspGI CCWGG 1 cut(s) 894
PspN4I GGNNCC 1 cut(s) 1495
PspPI GGNCC 1 cut(s) 847
PvuII CAGCTG 2 cut(s) 539, 908
RsaI GTAC 3 cut(s) 1121, 1189, 1523
RsaNI GTAC 3 cut(s) 1120, 1188, 1522
RseI CAYNNNNRTG 1 cut(s) 1325
SaqAI TTAA 6 cut(s) 327, 498, 1109, 1149, 1266, 1323
SatI GCNGC 6 cut(s) 28, 40, 87, 354, 906, 1248
Sau3AI GATC 3 cut(s) 523, 613, 733
Sau96I GGNCC 1 cut(s) 847
SchI GAGTC 3 cut(s) 303, 982, 1550
ScrFI CCNGG 2 cut(s) 494, 896
SduI GDGCHC 1 cut(s) 518
SfaNI GCATC 3 cut(s) 141, 1426, 1447
SfcI CTRYAG 1 cut(s) 600
SmiMI CAYNNNNRTG 1 cut(s) 1325
SmlI CTYRAG 2 cut(s) 359, 417
SmoI CTYRAG 2 cut(s) 359, 417
SsiI CCGC 1 cut(s) 354
SspI AATATT 1 cut(s) 949
SspMI CTAG 1 cut(s) 1050
StyD4I CCNGG 2 cut(s) 492, 894
StyI CCWWGG 2 cut(s) 345, 850
TaaI ACNGT 3 cut(s) 789, 1040, 1229
TaiI ACGT 2 cut(s) 402, 1096
TaqI TCGA 2 cut(s) 616, 1103
TatI WGTACW 3 cut(s) 1119, 1187, 1521
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 4 cut(s) 320, 412, 626, 1194
Tru1I TTAA 6 cut(s) 327, 498, 1109, 1149, 1266, 1323
Tru9I TTAA 6 cut(s) 327, 498, 1109, 1149, 1266, 1323
TscAI CASTG 3 cut(s) 523, 1045, 1234
TseFI GTSAC 2 cut(s) 589, 920
TseI GCWGC 5 cut(s) 27, 39, 86, 905, 1247
Tsp45I GTSAC 2 cut(s) 589, 920
TspDTI ATGAA 6 cut(s) 790, 818, 974, 1022, 1329, 1497
TspGWI ACGGA 2 cut(s) 762, 1173
TspRI CASTG 3 cut(s) 523, 1045, 1234
Van91I CCANNNNNTGG 1 cut(s) 277
VspI ATTAAT 1 cut(s) 1109
XapI RAATTY 4 cut(s) 796, 868, 1144, 1547
XbaI TCTAGA 1 cut(s) 1049
XceI RCATGY 1 cut(s) 1330
XmiI GTMKAC 1 cut(s) 729
XspI CTAG 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.