Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004468

Physical Location & Seq

Genomic Coordinates Forward (+)

62283139 .. 62289375

Gene Structure 6237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0494000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2490 bp

ATGGAGAGATCTGGTAGCGGCGGCGCCGATTTCAGGGACTTGCTTCGGAGTTCCTCAGAGAATAATGCACTCTTCGATGCATCACAATATGAATTTTTCGGCCAAAATGTGGCGGAAGAAGTTGAGTTGGGGGGTTTAGACGATGAGAATGACAGAAAATCTGTATTTGGGTCCGTGGATAATGAGTACCATTTGTTCGAGAAGGATGAGGGCCTAGGGTTGGGATCTTTATCTGATGTGGATGATCTGGCTACTACTTTTGCAAAGTTGAACAAAGTTGTAACTGGACCTAGACACCCAGGCGTTATTGGAGATAGAGGTTCTGGATCTTTTTCACGGGAAAGTTCATCTGCTACTGATTGGGCCCAAGATGGAGATTTTGGTAACTGGTTGGACCAGCAGATGTTTGATACAGACAATTCTCTGGACGGAAAAAGATGGTCATCACAGCCACAATCGTCTGCTCGATATCCAGAATCAAAACCTTTGCAGAGAACATCCTCATACCCTGAGCAGCCACCTGTCCTACAGCACTACTCCAGTGAACCAATTATAGTACCCAAATCAGCATATACCTCATTCCCTCCCCCTGGAAATAGGTCCCAGGGGGGATCACCACAGCATCTGAGTCTTTCTACTCTATCTGGTGCTTCCCAGTCACCTTTTTCTTCATCAAATCTTTCTTCTTTATCTAACTCTAATCTTCATCTGGCTGGTGGTTTACCTCATGGGTTGCATTATGGAGCGAACATGCCTCAGTTCACCAACCCTGCCCTTTCATTCAATAGCAGGTCACAAAATCATTGGGTCAACCATGCTGGAGTACTGCATGGGGATCATTCCAACCTCTTAAACAATATATTGCAGCAACAGCTACCTCATCAAAATGGACTTTTGTCCCCACAGTTATTGTCAGCTCAGCAGCAGCTACAACAGCAGAGATTGCACCGTCCGGTTCCGCCATCTTTGGCCCATTTTGCAGCAATGCAGTCCCAACTATATAATACCCATCCTTCTCCCTCACACAAGCCAATGCATGGATTGCCTGACATAAGAGAGCATAGACCTAAACATAGAGGCAAACACAATCGGTTTTCTCAAGGCTCTGATACTGGTAGTCAGAAAAGTGATAGTGGGTGGCTCCAGTTCAGATCTAAGCATATGACTTCCGAAGAGATAGAGAGTATTCTCAAAATGCAGCATGCTGCAACACATAGCAACGATCCCTACATAGATGATTATTACCACCAGGCAAGTCTTTCCAAAAAAGCCGCTGGATCGAGGTCAAAACACGCTTTCTGCCCATCTCATCTGAGAGAGTTCTCTTCCAGAGGTCGTAATAGTAGTGATCAGCATTCTCATTCTTCTGTTGATGCTCTTGGGAGGATTCCTCTCTCTTCCATCCGTAGGCCACGTCCCCTCCTTGAAGTCGATCCCCCTCCTGGTGAGGGGAATTCTGAACATGCCTCTGAGAAGCCTTTGGAACAGGAACCAATGCTTGCTGCTAGAATAACCATTGAAGATGGCCTTTGTCTCCTTCTGGATGTTGATGATATTGATCGACTTATACAATGCGGTCAGCCCCAAGACGGTGGAGTTCAACTTAGGCGAAGGCGGCAAATGCTGCTGGAAGGGTTGGCAGCATCACTTCAGCTTGTGGATCCACTTGGGAAAGGCAGCCATGCAGTTGGGTTGTCTCCAAAGGATGACCTCGTGTTCCTAAGGTTGGTGGCTCTTCCTAAAGGCCGAAAGCTCCTTTCTAGGTTTATCCAGCTTCTTTTCCCTGGTAGTGAGCTAGCCCGTATTGTCTGCATGACTGTATTCCGTCATTTAAGATTTTTGTTTGGAGGTCTCCCATCTGATCCTGCAGCTGCTGATACAATTACCAGTCTTGCAAAGACGGTTTCTGCATGTATTAATGGTATGGATCTTCGTGCTCTAAGTGCTTGTTTTGTTGCGGTCGTTTGTTCATCAGAGCAGCCACCTCTTCGTCCCCTTGGAAGCCCTGCTGGTGATGGGGCCGCTATTATATTGAAATCTGTTCTTGAAAGGGCAACTGAACTCTTAACTGACCCTCATGCTGTTGGGAACTGTAGTGTTTCTAATCGTGCCCTCTGGCAGGCTTCCTTCGATGAATTCTTTGGTCTTCTTACCAAGTACTGTCTGACTAAATATGAAACTATTGTGCAATCAATATTTACACAGTCCCAGCAAAGCACAGAAGTTATTGGTTCAGAGGCCACCAAAGCAATACACCGGGAAATGCCTGTGGAGCTTCTACGTGCCAGTCTTCCTCATACAAATGAGCACCAAAGGAAGCTTTTGTCAGATTTTGCTCATCGATCCATGCCCATTTCTGGCCTTAATGCCCATGGTGGCAGTGGTCAAATGAACTCGGAATCGGGGAATGTGAATCTGCTTTACAGTGGAAGGGTTGCTCATCTCTGGGGAGTGCAAGGGTACTGCATCTCCATCGAAGTAATTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

829

Amino Acids

90.72

Weight (kDa)

6.45

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20820 AT2G20820
fragaria_vesca	FvH4_3g20863 FvH4_6g44830 FvH4_6g44830
malus_domestica	MD09G1092800.v1.1 MD11G1238000.v1.1 MD17G1082800.v1.1
prunus_persica	Prupe.3G232400_v2.0.a1 Prupe.4G189100_v2.0.a1
pyrus_communis	pycom09g01810 pycom17g08070
rosa_chinensis	RchiOBHm_Chr2g0162011 RchiOBHm_Chr5g0035221
rosa_laevigata	RLG00000033607
rosa_multiflora	Rmu_sc0008428.1_g000005
rosa_roxburghii	Rroxscaffold_1G00045150 Rroxscaffold_2G00088400
rosa_rugosa	Rorug02G0493900 Rorug02G0494000 Rorug05G0150600 Rorug05G0150700.1
rosa_samantha	Rh2AG559900 Rh2BG573300 Rh2CG543500 Rh2DG583100 Rh5AG243600 Rh5BG243100 Rh5CG274800 Rh5DG252200
rosa_wichuraiana	Rw2G046340 Rw5G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2488
Acc36I	ACCTGC	1 cut(s)	780
AccB1I	GGYRCC	1 cut(s)	23
AccB7I	CCANNNNNTGG	2 cut(s)	109, 1037
AciI	CCGC	9 cut(s)	18, 21, 113, 959, 1272, 1575, 1615, 1958, 2022
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	92, 1453, 2135
AcuI	CTGAAG	1 cut(s)	1634
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	5 cut(s)	188, 558, 825, 2159, 2462
AgsI	TTSAA	7 cut(s)	271, 784, 1427, 1520, 1601, 2035, 2048
AjiI	CACGTC	1 cut(s)	1415
AjnI	CCWGG	6 cut(s)	298, 589, 603, 1248, 1441, 1783
Alw21I	GWGCWC	2 cut(s)	1939, 2310
Alw26I	GTCTC	3 cut(s)	1538, 1701, 1856
AlwNI	CAGNNNCTG	2 cut(s)	625, 1874
ApaI	GGGCCC	1 cut(s)	367
ApoI	RAATTY	3 cut(s)	92, 1453, 2135
AseI	ATTAAT	1 cut(s)	1917
AspA2I	CCTAGG	1 cut(s)	214
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	9 cut(s)	171, 211, 287, 363, 364, 394, 600, 970, 2019
AsuC2I	CCSGG	1 cut(s)	2258
AsuHPI	GGTGA	5 cut(s)	606, 651, 754, 1457, 2024
AsuNHI	GCTAGC	1 cut(s)	1795
AvaII	GGWCC	4 cut(s)	171, 287, 394, 600
AvrII	CCTAGG	1 cut(s)	214
AxyI	CCTNAGG	1 cut(s)	1721
BaeGI	GKGCMC	2 cut(s)	367, 2113
BamHI	GGATCC	1 cut(s)	1660
BanI	GGYRCC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	367
BauI	CACGAG	1 cut(s)	1712
BbsI	GAAGAC	2 cut(s)	2138, 2282
Bbv12I	GWGCWC	2 cut(s)	1939, 2310
BcgI	CGANNNNNNTGC	2 cut(s)	2455, 2489
BciT130I	CCWGG	6 cut(s)	300, 591, 605, 1250, 1443, 1785
BclI	TGATCA	1 cut(s)	1348
BcnI	CCSGG	1 cut(s)	2258
BcoDI	GTCTC	3 cut(s)	1538, 1701, 1856
BfaI	CTAG	5 cut(s)	215, 291, 1506, 1761, 1796
BfmI	CTRYAG	3 cut(s)	527, 1866, 2092
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	780
BglII	AGATCT	2 cut(s)	8, 1151
BlnI	CCTAGG	1 cut(s)	214
BlpI	GCTNAGC	1 cut(s)	918
BmcAI	AGTACT	2 cut(s)	825, 2159
Bme1390I	CCNGG	7 cut(s)	300, 591, 605, 1250, 1443, 1785, 2258
Bme18I	GGWCC	4 cut(s)	171, 287, 394, 600
BmgBI	CACGTC	1 cut(s)	1415
BmgT120I	GGNCC	9 cut(s)	171, 211, 287, 363, 364, 394, 600, 970, 2019
BmiI	GGNNCC	9 cut(s)	25, 172, 365, 602, 957, 1142, 1491, 1662, 2020
BmrFI	CCNGG	7 cut(s)	300, 591, 605, 1250, 1443, 1785, 2258
BmrI	ACTGGG	1 cut(s)	649
BmsI	GCATC	6 cut(s)	67, 89, 631, 1363, 1652, 2475
BmtI	GCTAGC	1 cut(s)	1799
BmuI	ACTGGG	1 cut(s)	649
BoxI	GACNNNNGTC	1 cut(s)	895
BpiI	GAAGAC	2 cut(s)	2138, 2282
BplI	GAGNNNNNCTC	2 cut(s)	1375, 1407
BpmI	CTGGAG	3 cut(s)	523, 840, 1127
Bpu10I	CCTNAGC	1 cut(s)	510
Bpu1102I	GCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	1 cut(s)	1083
BpuMI	CCSGG	1 cut(s)	2258
Bsa29I	ATCGAT	1 cut(s)	2341
BsaAI	YACGTR	1 cut(s)	2282
BsaBI	GATNNNNATC	3 cut(s)	229, 442, 1557
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	1856
BsaJI	CCNNGG	9 cut(s)	174, 214, 298, 589, 603, 604, 1783, 1996, 2371
BsaWI	WCCGGW	1 cut(s)	952
BsaXI	ACNNNNNCTCC	4 cut(s)	1404, 1434, 2453, 2483
Bse1I	ACTGG	8 cut(s)	289, 392, 540, 655, 1117, 1144, 1887, 2286
Bse21I	CCTNAGG	1 cut(s)	1721
Bse3DI	GCAATG	1 cut(s)	990
Bse8I	GATNNNNATC	3 cut(s)	229, 442, 1557
BseBI	CCWGG	6 cut(s)	300, 591, 605, 1250, 1443, 1785
BseCI	ATCGAT	1 cut(s)	2341
BseDI	CCNNGG	9 cut(s)	174, 214, 298, 589, 603, 604, 1783, 1996, 2371
BseGI	GGATG	7 cut(s)	211, 247, 497, 1009, 1401, 1549, 1711
BseJI	GATNNNNATC	3 cut(s)	229, 442, 1557
BseMI	GCAATG	1 cut(s)	990
BseMII	CTCAG	7 cut(s)	69, 501, 617, 770, 932, 1304, 1461
BseNI	ACTGG	8 cut(s)	289, 392, 540, 655, 1117, 1144, 1887, 2286
BseSI	GKGCMC	2 cut(s)	367, 2113
BseYI	CCCAGC	1 cut(s)	2208
Bsh1285I	CGRYCG	1 cut(s)	1962
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	2341
BsiEI	CGRYCG	1 cut(s)	1962
BsiHKAI	GWGCWC	2 cut(s)	1939, 2310
BsiSI	CCGG	2 cut(s)	953, 2257
BslFI	GGGAC	7 cut(s)	50, 586, 883, 976, 1401, 1977, 2191
BsmAI	GTCTC	3 cut(s)	1538, 1701, 1856
BsmFI	GGGAC	7 cut(s)	50, 586, 883, 976, 1401, 1977, 2191
BsmI	GAATGC	1 cut(s)	1354
Bso31I	GGTCTC	1 cut(s)	1856
Bsp120I	GGGCCC	1 cut(s)	363
Bsp1286I	GDGCHC	4 cut(s)	367, 1939, 2113, 2310
Bsp1720I	GCTNAGC	1 cut(s)	918
Bsp19I	CCATGG	1 cut(s)	2371
BspACI	CCGC	9 cut(s)	18, 21, 113, 959, 1272, 1575, 1615, 1958, 2022
BspCNI	CTCAG	7 cut(s)	68, 502, 618, 769, 931, 1305, 1462
BspDI	ATCGAT	1 cut(s)	2341
BspLI	GGNNCC	9 cut(s)	25, 172, 365, 602, 957, 1142, 1491, 1662, 2020
BspMAI	CTGCAG	1 cut(s)	1870
BspMI	ACCTGC	1 cut(s)	780
BspOI	GCTAGC	1 cut(s)	1799
BspQI	GCTCTTC	1 cut(s)	1740
BspT107I	GGYRCC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	1856
BsrDI	GCAATG	1 cut(s)	990
BsrI	ACTGG	8 cut(s)	289, 392, 540, 655, 1117, 1144, 1887, 2286
BssECI	CCNNGG	9 cut(s)	174, 214, 298, 589, 603, 604, 1783, 1996, 2371
BssNI	GRCGYC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	1712
BssT1I	CCWWGG	3 cut(s)	214, 1996, 2371
Bst2BI	CACGAG	1 cut(s)	1712
Bst2UI	CCWGG	6 cut(s)	300, 591, 605, 1250, 1443, 1785
Bst4CI	ACNGT	9 cut(s)	906, 950, 1592, 1819, 1903, 2093, 2162, 2205, 2426
Bst6I	CTCTTC	6 cut(s)	77, 1167, 1330, 1402, 1740, 1992
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	3 cut(s)	943, 1042, 1624
BstBAI	YACGTR	1 cut(s)	2282
BstC8I	GCNNGC	4 cut(s)	1203, 1500, 1797, 2121
BstDSI	CCRYGG	2 cut(s)	174, 2371
BstENI	CCTNNNNNAGG	1 cut(s)	2117
BstF5I	GGATG	7 cut(s)	211, 247, 497, 1009, 1401, 1549, 1711
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstMAI	GTCTC	3 cut(s)	1538, 1701, 1856
BstMCI	CGRYCG	1 cut(s)	1962
BstNI	CCWGG	6 cut(s)	300, 591, 605, 1250, 1443, 1785
BstNSI	RCATGY	4 cut(s)	754, 1205, 1466, 1914
BstPAI	GACNNNNGTC	1 cut(s)	895
BstSCI	CCNGG	7 cut(s)	298, 589, 603, 1248, 1441, 1783, 2256
BstSFI	CTRYAG	3 cut(s)	527, 1866, 2092
BstSLI	GKGCMC	2 cut(s)	367, 2113
BstV2I	GAAGAC	2 cut(s)	2138, 2282
BstX2I	RGATCY	6 cut(s)	8, 224, 326, 1151, 1660, 1927
BstXI	CCANNNNNNTGG	2 cut(s)	1592, 1688
BstYI	RGATCY	6 cut(s)	8, 224, 326, 1151, 1660, 1927
Bsu15I	ATCGAT	1 cut(s)	2341
Bsu36I	CCTNAGG	1 cut(s)	1721
BsuTUI	ATCGAT	1 cut(s)	2341
BtgI	CCRYGG	2 cut(s)	174, 2371
BtrI	CACGTC	1 cut(s)	1415
BtsCI	GGATG	7 cut(s)	211, 247, 497, 1009, 1401, 1549, 1711
BtsI	GCAGTG	1 cut(s)	2386
BtsIMutI	CAGTG	3 cut(s)	547, 2386, 2431
BveI	ACCTGC	1 cut(s)	780
Cac8I	GCNNGC	4 cut(s)	1203, 1500, 1797, 2121
CaiI	CAGNNNCTG	2 cut(s)	625, 1874
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	9 cut(s)	171, 211, 287, 363, 364, 394, 600, 970, 2019
ClaI	ATCGAT	1 cut(s)	2341
Csp6I	GTAC	5 cut(s)	187, 557, 824, 2158, 2461
CspCI	CAANNNNNGTGG	2 cut(s)	891, 926
CviQI	GTAC	5 cut(s)	187, 557, 824, 2158, 2461
DinI	GGCGCC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	100
Eam1104I	CTCTTC	6 cut(s)	77, 1167, 1330, 1402, 1740, 1992
EarI	CTCTTC	6 cut(s)	77, 1167, 1330, 1402, 1740, 1992
EciI	GGCGGA	2 cut(s)	128, 948
Eco130I	CCWWGG	3 cut(s)	214, 1996, 2371
Eco24I	GRGCYC	1 cut(s)	367
Eco31I	GGTCTC	1 cut(s)	1856
Eco32I	GATATC	1 cut(s)	470
Eco47I	GGWCC	4 cut(s)	171, 287, 394, 600
Eco57I	CTGAAG	1 cut(s)	1634
Eco81I	CCTNAGG	1 cut(s)	1721
EcoNI	CCTNNNNNAGG	1 cut(s)	2117
EcoO109I	RGGNCCY	2 cut(s)	211, 600
EcoRI	GAATTC	2 cut(s)	1453, 2135
EcoRII	CCWGG	6 cut(s)	298, 589, 603, 1248, 1441, 1783
EcoRV	GATATC	1 cut(s)	470
EcoT14I	CCWWGG	3 cut(s)	214, 1996, 2371
EcoT22I	ATGCAT	2 cut(s)	82, 1038
EcoT38I	GRGCYC	1 cut(s)	367
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	3 cut(s)	214, 1996, 2371
FalI	AAGNNNNNCTT	2 cut(s)	1512, 1544
FaqI	GGGAC	7 cut(s)	50, 586, 883, 976, 1401, 1977, 2191
FauNDI	CATATG	1 cut(s)	1161
FbaI	TGATCA	1 cut(s)	1348
FokI	GGATG	7 cut(s)	218, 254, 484, 996, 1388, 1556, 1718
FriOI	GRGCYC	1 cut(s)	367
FspBI	CTAG	5 cut(s)	215, 291, 1506, 1761, 1796
GlaI	GCGC	1 cut(s)	25
GsaI	CCCAGC	1 cut(s)	2212
GsuI	CTGGAG	3 cut(s)	523, 840, 1127
HaeII	RGCGCY	1 cut(s)	27
HapII	CCGG	2 cut(s)	953, 2257
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	811
HindII	GTYRAC	1 cut(s)	811
HindIII	AAGCTT	1 cut(s)	2318
HinfI	GANTC	5 cut(s)	476, 628, 1387, 2399, 2413
HpaII	CCGG	2 cut(s)	953, 2257
HphI	GGTGA	5 cut(s)	606, 651, 754, 1457, 2024
Hpy166II	GTNNAC	4 cut(s)	545, 722, 762, 811
Hpy188III	TCNNGA	7 cut(s)	199, 324, 425, 473, 1329, 1541, 2045
Hpy8I	GTNNAC	4 cut(s)	545, 722, 762, 811
HpyAV	CCTTC	7 cut(s)	196, 1023, 1547, 1605, 1625, 2137, 2424
HpyCH4III	ACNGT	9 cut(s)	906, 950, 1592, 1819, 1903, 2093, 2162, 2205, 2426
HpyCH4IV	ACGT	2 cut(s)	1414, 2281
HpySE526I	ACGT	2 cut(s)	1414, 2281
Hsp92I	GRCGYC	1 cut(s)	24
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	1348
LguI	GCTCTTC	1 cut(s)	1740
LmnI	GCTCC	4 cut(s)	743, 1146, 1758, 2272
LweI	GCATC	6 cut(s)	67, 89, 631, 1363, 1652, 2475
MaeI	CTAG	5 cut(s)	215, 291, 1506, 1761, 1796
MaeII	ACGT	2 cut(s)	1414, 2281
MaeIII	GTNAC	4 cut(s)	280, 383, 657, 792
MflI	RGATCY	6 cut(s)	8, 224, 326, 1151, 1660, 1927
MhlI	GDGCHC	4 cut(s)	367, 1939, 2113, 2310
MluCI	AATT	7 cut(s)	92, 418, 549, 1453, 1881, 2135, 2481
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	2 cut(s)	372, 867
Mph1103I	ATGCAT	2 cut(s)	82, 1038
MseI	TTAA	5 cut(s)	851, 1832, 1917, 2066, 2364
MslI	CAYNNNNRTG	2 cut(s)	885, 2301
MspA1I	CMGCKG	2 cut(s)	1274, 1871
MspI	CCGG	2 cut(s)	953, 2257
MspR9I	CCNGG	7 cut(s)	300, 591, 605, 1250, 1443, 1785, 2258
Mva1269I	GAATGC	1 cut(s)	1354
MvaI	CCWGG	6 cut(s)	300, 591, 605, 1250, 1443, 1785
NarI	GGCGCC	1 cut(s)	24
NciI	CCSGG	1 cut(s)	2258
NcoI	CCATGG	1 cut(s)	2371
NdeI	CATATG	1 cut(s)	1161
NheI	GCTAGC	1 cut(s)	1795
NlaIV	GGNNCC	9 cut(s)	25, 172, 365, 602, 957, 1142, 1491, 1662, 2020
NmuCI	GTSAC	2 cut(s)	657, 792
NsiI	ATGCAT	2 cut(s)	82, 1038
NspI	RCATGY	4 cut(s)	754, 1205, 1466, 1914
PaeI	GCATGC	1 cut(s)	1205
PasI	CCCWGGG	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	1740
PctI	GAATGC	1 cut(s)	1354
PfeI	GAWTC	4 cut(s)	476, 1387, 2399, 2413
PflMI	CCANNNNNTGG	2 cut(s)	109, 1037
PleI	GAGTC	1 cut(s)	636
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	636
Ppu21I	YACGTR	1 cut(s)	2282
PpuMI	RGGWCCY	1 cut(s)	600
PshAI	GACNNNNGTC	1 cut(s)	895
PshBI	ATTAAT	1 cut(s)	1917
PsiI	TTATAA	1 cut(s)	2488
Psp5II	RGGWCCY	1 cut(s)	600
Psp6I	CCWGG	6 cut(s)	298, 589, 603, 1248, 1441, 1783
PspFI	CCCAGC	1 cut(s)	2208
PspGI	CCWGG	6 cut(s)	298, 589, 603, 1248, 1441, 1783
PspN4I	GGNNCC	9 cut(s)	25, 172, 365, 602, 957, 1142, 1491, 1662, 2020
PspOMI	GGGCCC	1 cut(s)	363
PspPI	GGNCC	9 cut(s)	171, 211, 287, 363, 364, 394, 600, 970, 2019
PspPPI	RGGWCCY	1 cut(s)	600
PsrI	GAACNNNNNNTAC	2 cut(s)	179, 211
PstI	CTGCAG	1 cut(s)	1870
PstNI	CAGNNNCTG	2 cut(s)	625, 1874
PsuI	RGATCY	6 cut(s)	8, 224, 326, 1151, 1660, 1927
PvuII	CAGCTG	1 cut(s)	1871
RsaI	GTAC	5 cut(s)	188, 558, 825, 2159, 2462
RsaNI	GTAC	5 cut(s)	187, 557, 824, 2158, 2461
RseI	CAYNNNNRTG	2 cut(s)	885, 2301
SapI	GCTCTTC	1 cut(s)	1740
SaqAI	TTAA	5 cut(s)	851, 1832, 1917, 2066, 2364
Sau96I	GGNCC	9 cut(s)	171, 211, 287, 363, 364, 394, 600, 970, 2019
ScaI	AGTACT	2 cut(s)	825, 2159
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	7 cut(s)	300, 591, 605, 1250, 1443, 1785, 2258
SduI	GDGCHC	4 cut(s)	367, 1939, 2113, 2310
SfaNI	GCATC	6 cut(s)	67, 89, 631, 1363, 1652, 2475
SfcI	CTRYAG	3 cut(s)	527, 1866, 2092
SfoI	GGCGCC	1 cut(s)	25
SinI	GGWCC	4 cut(s)	171, 287, 394, 600
SmiMI	CAYNNNNRTG	2 cut(s)	885, 2301
SmlI	CTYRAG	1 cut(s)	1098
SmoI	CTYRAG	1 cut(s)	1098
SphI	GCATGC	1 cut(s)	1205
Sse9I	AATT	7 cut(s)	92, 418, 549, 1453, 1881, 2135, 2481
SsiI	CCGC	9 cut(s)	18, 21, 113, 959, 1272, 1575, 1615, 1958, 2022
SspDI	GGCGCC	1 cut(s)	23
SspI	AATATT	1 cut(s)	2196
SspMI	CTAG	5 cut(s)	215, 291, 1506, 1761, 1796
StyD4I	CCNGG	7 cut(s)	298, 589, 603, 1248, 1441, 1783, 2256
StyI	CCWWGG	3 cut(s)	214, 1996, 2371
TaaI	ACNGT	9 cut(s)	906, 950, 1592, 1819, 1903, 2093, 2162, 2205, 2426
TaiI	ACGT	2 cut(s)	1417, 2284
TaqI	TCGA	9 cut(s)	75, 198, 466, 1280, 1431, 1561, 2130, 2341, 2475
TasI	AATT	7 cut(s)	92, 418, 549, 1453, 1881, 2135, 2481
TatI	WGTACW	2 cut(s)	823, 2157
TauI	GCSGC	5 cut(s)	21, 24, 1274, 1618, 2024
TfiI	GAWTC	4 cut(s)	476, 1387, 2399, 2413
Tru1I	TTAA	5 cut(s)	851, 1832, 1917, 2066, 2364
Tru9I	TTAA	5 cut(s)	851, 1832, 1917, 2066, 2364
TscAI	CASTG	3 cut(s)	547, 2386, 2431
TseFI	GTSAC	2 cut(s)	657, 792
Tsp45I	GTSAC	2 cut(s)	657, 792
TspDTI	ATGAA	9 cut(s)	105, 336, 660, 695, 768, 1959, 2148, 2190, 2405
TspGWI	ACGGA	4 cut(s)	163, 444, 1394, 1814
TspRI	CASTG	3 cut(s)	547, 2386, 2431
Van91I	CCANNNNNTGG	2 cut(s)	109, 1037
VpaK11BI	GGWCC	4 cut(s)	171, 287, 394, 600
VspI	ATTAAT	1 cut(s)	1917
XagI	CCTNNNNNAGG	1 cut(s)	2117
XapI	RAATTY	3 cut(s)	92, 1453, 2135
XceI	RCATGY	4 cut(s)	754, 1205, 1466, 1914
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2378
XmaJI	CCTAGG	1 cut(s)	214
XspI	CTAG	5 cut(s)	215, 291, 1506, 1761, 1796
ZrmI	AGTACT	2 cut(s)	825, 2159
Zsp2I	ATGCAT	2 cut(s)	82, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.