Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004468

Physical Location & Seq

Genomic Coordinates Reverse (-)

29096980 .. 29108477

Gene Structure 11498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCGCCGTGGATCGCTGCAACTCGCCAACTCGCGAATATGACGCGGCTTTCCTCTCCCAAGTCCGTTACTAACGCTAAAGCCGTTTCCCTCCTCCAACGGCGAGGCCTCGCCGGCGGTGCTGATCATCATGGACCTCCAAAGGTGAACTTTTGGGAGGACCCCTTGAGTCCATCTAAATGGAAAAAAGAACACATCAGAGTTCGAGAAGTGCCGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

8.18

Weight (kDa)

11.34

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20820 AT2G20820
fragaria_vesca	FvH4_3g20863 FvH4_6g44830 FvH4_6g44830
malus_domestica	MD09G1092800.v1.1 MD11G1238000.v1.1 MD17G1082800.v1.1
prunus_persica	Prupe.3G232400_v2.0.a1 Prupe.4G189100_v2.0.a1
pyrus_communis	pycom09g01810 pycom17g08070
rosa_chinensis	RchiOBHm_Chr2g0162011 RchiOBHm_Chr5g0035221
rosa_laevigata	RLG00000033607
rosa_multiflora	Rmu_sc0008428.1_g000005
rosa_roxburghii	Rroxscaffold_1G00045150 Rroxscaffold_2G00088400
rosa_rugosa	Rorug02G0493900 Rorug02G0494000 Rorug05G0150600 Rorug05G0150700.1
rosa_samantha	Rh2AG559900 Rh2BG573300 Rh2CG543500 Rh2DG583100 Rh5AG243600 Rh5BG243100 Rh5CG274800 Rh5DG252200
rosa_wichuraiana	Rw2G046340 Rw5G022250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	3 cut(s)	35, 46, 217
AciI	CCGC	3 cut(s)	46, 117, 215
AclWI	GGATC	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	7, 219
AspS9I	GGNCC	2 cut(s)	134, 160
AsuHPI	GGTGA	1 cut(s)	157
AvaII	GGWCC	2 cut(s)	134, 160
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	2 cut(s)	68, 116
BclI	TGATCA	1 cut(s)	124
BfaI	CTAG	1 cut(s)	220
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	3 cut(s)	18, 47, 215
BlsI	GCNGC	3 cut(s)	19, 48, 216
Bme18I	GGWCC	2 cut(s)	134, 160
BmgT120I	GGNCC	2 cut(s)	134, 160
BmiI	GGNNCC	2 cut(s)	6, 162
BpuEI	CTTGAG	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	8
Bse118I	RCCGGY	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	8
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	4
Bsh1236I	CGCG	3 cut(s)	35, 46, 217
BshFI	GGCC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	114
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	12, 124
Bsp68I	TCGCGA	1 cut(s)	35
BspACI	CCGC	3 cut(s)	46, 117, 215
BspANI	GGCC	1 cut(s)	108
BspFNI	CGCG	3 cut(s)	35, 46, 217
BspLI	GGNNCC	2 cut(s)	6, 162
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	113
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	12, 124
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	115
BstDSI	CCRYGG	1 cut(s)	8
BstFNI	CGCG	3 cut(s)	35, 46, 217
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 219
BstKTI	GATC	2 cut(s)	15, 127
BstMBI	GATC	2 cut(s)	12, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 119
BstUI	CGCG	3 cut(s)	35, 46, 217
BstV1I	GCAGC	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	8
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	2 cut(s)	7, 219
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	134, 160
CseI	GACGC	1 cut(s)	52
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	3 cut(s)	49, 83, 108
CviKI_1	RGCY	3 cut(s)	49, 83, 108
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	14, 126
DpnII	GATC	2 cut(s)	12, 124
Eco147I	AGGCCT	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	134, 160
EcoO109I	RGGNCCY	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	134
FaiI	YATR	2 cut(s)	41, 132
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FatI	CATG	1 cut(s)	130
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	3 cut(s)	18, 47, 215
Fsp4HI	GCNGC	3 cut(s)	18, 47, 215
FspBI	CTAG	1 cut(s)	220
GlaI	GCGC	2 cut(s)	6, 218
GluI	GCNGC	3 cut(s)	18, 47, 215
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	7, 219
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	134
Hin6I	GCGC	2 cut(s)	5, 217
HinP1I	GCGC	2 cut(s)	5, 217
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	2 cut(s)	34, 206
Hpy8I	GTNNAC	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 119
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	134
HspAI	GCGC	2 cut(s)	5, 217
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	12, 124
LpnPI	CCDG	1 cut(s)	127
Lsp1109I	GCAGC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	14, 126
MboI	GATC	2 cut(s)	12, 124
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	178
MmeI	TCCRAC	1 cut(s)	121
MnlI	CCTC	7 cut(s)	64, 98, 101, 104, 119, 147, 151
MreI	CGCCGGCG	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	113
MslI	CAYNNNNRTG	1 cut(s)	178
MspI	CCGG	1 cut(s)	114
MvnI	CGCG	3 cut(s)	35, 46, 217
MwoI	GCNNNNNNNGC	2 cut(s)	114, 119
NaeI	GCCGGC	1 cut(s)	115
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	12, 124
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	2 cut(s)	6, 162
NruI	TCGCGA	1 cut(s)	35
PceI	AGGCCT	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdiI	GCCGGC	1 cut(s)	115
PkrI	GCNGC	3 cut(s)	19, 48, 216
PleI	GAGTC	1 cut(s)	177
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	177
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	6, 162
PspPI	GGNCC	2 cut(s)	134, 160
PspPPI	RGGWCCY	1 cut(s)	160
RruI	TCGCGA	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	178
SatI	GCNGC	3 cut(s)	18, 47, 215
Sau3AI	GATC	2 cut(s)	12, 124
Sau96I	GGNCC	2 cut(s)	134, 160
SchI	GAGTC	1 cut(s)	178
SetI	ASST	2 cut(s)	139, 147
SfoI	GGCGCC	1 cut(s)	6
SgrAI	CRCCGGYG	1 cut(s)	113
SinI	GGWCC	2 cut(s)	134, 160
SmiMI	CAYNNNNRTG	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	166
SmoI	CTYRAG	1 cut(s)	166
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	3 cut(s)	46, 117, 215
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	205
TauI	GCSGC	2 cut(s)	49, 217
TseI	GCWGC	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	55
VpaK11BI	GGWCC	2 cut(s)	134, 160
XspI	CTAG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.