MD11G1238000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004468
Physical Location & Seq
Forward (+)
34588534 .. 34590654
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1238000.v1.1.491

Sequence Viewer

Length: 309 bp
ATGGCGGCATGGACAGCGACGGCCCGTCAAGCAGCGAATATGGCGTGGCTTTCCTCTCCCAAGTCGGCTTCCACCGCAAAATCTGCTTCCCTCGTCCATCGGCGCGGTCTTGCCGGCGGCGGCGATCATCATGGACCTCCGAAGGTGAACTTTTGGGAGGACCCAATGCACCCATCTAAATGGAAGGAAGAACATTTTGTGCTCGTCTCTTTAGCTGGATGGGGGGCGGTTATATATGGGGGTTACAAGCTCTTCACAAAAGGCAAAGAGGACAAAAAGGAAGGGAGAGTTGAAGAACGGCCACACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.22

Weight (kDa)

9.7

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 105
AciI CCGC 6 cut(s) 5, 75, 105, 117, 120, 227
AcoI YGGCCR 1 cut(s) 299
AgsI TTSAA 1 cut(s) 293
AhdI GACNNNNNGTC 1 cut(s) 24
AluBI AGCT 2 cut(s) 215, 250
AluI AGCT 2 cut(s) 215, 250
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 211
AoxI GGCC 2 cut(s) 21, 299
ApeKI GCWGC 1 cut(s) 32
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 22, 134, 160
AsuHPI GGTGA 1 cut(s) 157
AvaII GGWCC 2 cut(s) 134, 160
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 44
BccI CCATC 3 cut(s) 105, 181, 213
BceAI ACGGC 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 211
BisI GCNGC 4 cut(s) 6, 33, 118, 121
BlsI GCNGC 4 cut(s) 7, 34, 119, 122
Bme18I GGWCC 2 cut(s) 134, 160
BmeRI GACNNNNNGTC 1 cut(s) 24
BmgT120I GGNCC 3 cut(s) 22, 134, 160
BmiI GGNNCC 1 cut(s) 162
Bse118I RCCGGY 1 cut(s) 113
BseGI GGATG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 2 cut(s) 23, 301
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 211
BsmBI CGTCTC 1 cut(s) 211
BsnI GGCC 2 cut(s) 23, 301
Bsp1286I GDGCHC 1 cut(s) 204
Bsp143I GATC 1 cut(s) 124
BspACI CCGC 6 cut(s) 5, 75, 105, 117, 120, 227
BspANI GGCC 2 cut(s) 23, 301
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 113
BssMI GATC 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 115
BstF5I GGATG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 5 cut(s) 14, 29, 41, 74, 83
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 180
BsuRI GGCC 2 cut(s) 23, 301
BtsCI GGATG 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 22, 134, 160
CviAII CATG 2 cut(s) 9, 131
CviJI RGCY 6 cut(s) 23, 49, 68, 215, 250, 301
CviKI_1 RGCY 6 cut(s) 23, 49, 68, 215, 250, 301
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
DriI GACNNNNNGTC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 257
Eam1105I GACNNNNNGTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 134, 160
EcoO109I RGGNCCY 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 211
FaeI CATG 2 cut(s) 12, 134
FaiI YATR 6 cut(s) 10, 41, 132, 233, 235, 237
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 2 cut(s) 8, 130
Fnu4HI GCNGC 4 cut(s) 6, 33, 118, 121
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 4 cut(s) 6, 33, 118, 121
GlaI GCGC 1 cut(s) 104
GluI GCNGC 4 cut(s) 6, 33, 118, 121
HaeIII GGCC 2 cut(s) 23, 301
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 105
Hin1II CATG 2 cut(s) 12, 134
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 148
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 136, 178, 275
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 29, 41, 74, 83
Hsp92II CATG 2 cut(s) 12, 134
HspAI GCGC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 124
LguI GCTCTTC 1 cut(s) 257
LpnPI CCDG 2 cut(s) 127, 201
Lsp1109I GCAGC 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 3 cut(s) 200, 244, 305
MhlI GDGCHC 1 cut(s) 204
MnlI CCTC 5 cut(s) 64, 101, 147, 151, 262
MroNI GCCGGC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 178
MspI CCGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 5 cut(s) 14, 29, 41, 74, 83
NaeI GCCGGC 1 cut(s) 115
NdeII GATC 1 cut(s) 124
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 2 cut(s) 12, 134
NlaIV GGNNCC 1 cut(s) 162
PciSI GCTCTTC 1 cut(s) 257
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 4 cut(s) 7, 34, 119, 122
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 3 cut(s) 22, 134, 160
PspPPI RGGWCCY 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 178
SapI GCTCTTC 1 cut(s) 257
SatI GCNGC 4 cut(s) 6, 33, 118, 121
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 3 cut(s) 22, 134, 160
SduI GDGCHC 1 cut(s) 204
SetI ASST 4 cut(s) 139, 147, 217, 252
SinI GGWCC 2 cut(s) 134, 160
SmiMI CAYNNNNRTG 1 cut(s) 178
SsiI CCGC 6 cut(s) 5, 75, 105, 117, 120, 227
TauI GCSGC 3 cut(s) 8, 120, 123
TseI GCWGC 1 cut(s) 32
VpaK11BI GGWCC 2 cut(s) 134, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.